Wall clock time and date at job start Mon Mar 30 2020 06:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.52451 * 2 1 4 4 C 1.53117 * 109.51710 * 239.87606 * 2 1 3 5 5 C 1.53039 * 109.27804 * 182.44255 * 4 2 1 6 6 N 1.46845 * 109.52472 * 59.17430 * 5 4 2 7 7 C 1.46900 * 110.99982 * 174.16112 * 6 5 4 8 8 C 1.53001 * 109.47143 * 176.20813 * 7 6 5 9 9 H 1.09004 * 109.47005 * 301.80699 * 8 7 6 10 10 C 1.47204 * 109.46970 * 61.80475 * 8 7 6 11 11 N 5.88842 * 123.50404 * 161.83729 * 2 1 3 12 12 C 1.52990 * 109.47305 * 181.80573 * 8 7 6 13 13 C 1.50697 * 109.47527 * 174.99992 * 12 8 7 14 14 H 1.08007 * 119.99824 * 0.02562 * 13 12 8 15 15 C 1.37880 * 120.00516 * 180.02562 * 13 12 8 16 16 N 1.31509 * 119.99611 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99964 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47565 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47068 * 120.00225 * 17 15 13 20 20 H 1.48498 * 109.47486 * 239.99802 * 17 15 13 21 21 C 1.46847 * 111.20202 * 298.26276 * 6 5 4 22 22 C 1.53042 * 109.51847 * 61.73924 * 21 6 5 23 23 H 1.09001 * 109.50522 * 60.76610 * 22 21 6 24 24 F 1.39901 * 109.49758 * 180.88008 * 22 21 6 25 25 H 1.08997 * 109.47025 * 180.12746 * 1 2 3 26 26 H 1.08998 * 109.46441 * 300.12302 * 1 2 3 27 27 H 1.09000 * 109.46947 * 60.11925 * 1 2 3 28 28 H 1.08998 * 109.50732 * 62.50057 * 4 2 1 29 29 H 1.08997 * 109.50579 * 302.37935 * 4 2 1 30 30 H 1.09007 * 109.45873 * 299.16242 * 5 4 2 31 31 H 1.08994 * 109.45573 * 179.19496 * 5 4 2 32 32 H 1.08995 * 109.46820 * 56.20792 * 7 6 5 33 33 H 1.09001 * 109.47304 * 296.20768 * 7 6 5 34 34 H 1.08998 * 109.47230 * 295.00139 * 12 8 7 35 35 H 1.09000 * 109.47459 * 54.99874 * 12 8 7 36 36 H 0.96998 * 119.99986 * 179.97438 * 16 15 13 37 37 H 1.08996 * 109.46215 * 181.75482 * 21 6 5 38 38 H 1.08992 * 109.46136 * 301.72880 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0416 -0.7243 -1.2483 5 6 3.5708 -0.7746 -1.2122 6 7 4.0102 -1.4790 -0.0010 7 6 5.4670 -1.6679 -0.0013 8 6 5.8972 -2.3184 1.3151 9 1 5.5860 -1.6900 2.1496 10 6 5.2669 -3.6431 1.4367 11 7 4.7805 -4.6654 1.5305 12 6 7.4190 -2.4741 1.3337 13 6 7.8538 -3.0006 2.6771 14 1 7.1181 -3.2043 3.4412 15 6 9.1908 -3.2224 2.9309 16 7 10.0865 -2.9748 2.0004 17 14 9.7296 -3.8743 4.5964 18 1 8.5380 -4.0698 5.4607 19 1 10.4289 -5.1721 4.4173 20 1 10.6505 -2.9000 5.2351 21 6 3.5709 -0.7760 1.2111 22 6 2.0418 -0.7259 1.2473 23 1 1.6447 -1.7408 1.2663 24 9 1.6240 -0.0386 2.3920 25 1 -0.3633 -1.0276 0.0023 26 1 -0.3632 0.5158 0.8889 27 1 -0.3633 0.5120 -0.8911 28 1 1.7161 -0.1878 -2.1395 29 1 1.6446 -1.7392 -1.2685 30 1 3.9674 0.2408 -1.2060 31 1 3.9375 -1.3022 -2.0926 32 1 5.9588 -0.7009 -0.1064 33 1 5.7498 -2.3118 -0.8341 34 1 7.7223 -3.1729 0.5541 35 1 7.8856 -1.5054 1.1548 36 1 11.0271 -3.1305 2.1791 37 1 3.9379 -1.3047 2.0907 38 1 3.9675 0.2392 1.2060 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611501383.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:30 Heat of formation + Delta-G solvation = -60.640116 kcal Electronic energy + Delta-G solvation = -19013.860357 eV Core-core repulsion = 15997.011622 eV Total energy + Delta-G solvation = -3016.848735 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.149 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.65621 -40.24448 -38.01100 -35.95493 -35.15345 -33.21620 -31.32293 -29.69718 -27.69255 -24.88111 -24.30754 -23.25157 -22.54907 -20.96567 -18.59464 -18.27718 -17.38148 -16.88168 -16.47443 -16.32209 -15.98023 -15.92897 -15.09786 -14.71903 -14.63433 -14.32172 -13.97693 -13.79871 -13.68423 -13.57792 -13.28277 -13.10496 -13.02739 -12.86477 -12.54395 -12.49636 -12.33543 -12.05623 -11.85828 -11.60269 -11.49770 -11.34151 -11.24047 -10.92795 -10.56285 -9.30067 -8.20914 -6.28969 1.38152 1.41538 1.51735 2.03213 2.10191 2.40438 2.75892 3.14779 3.30932 3.51026 3.60574 3.69907 3.86975 4.05801 4.20089 4.25695 4.38223 4.46394 4.58638 4.65292 4.69577 4.77794 4.78187 4.84884 4.93806 4.97823 5.02218 5.08513 5.19585 5.31465 5.43768 5.44890 5.59617 5.77398 5.98975 6.11124 6.20580 6.81141 6.90278 7.39827 8.90200 Molecular weight = 254.15amu Principal moments of inertia in cm(-1) A = 0.032858 B = 0.004754 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.935109 B = 5888.558119 C = 6161.759634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 H 0.083 0.917 4 C -0.103 4.103 5 C 0.049 3.951 6 N -0.548 5.548 7 C 0.075 3.925 8 C 0.013 3.987 9 H 0.114 0.886 10 C 0.264 3.736 11 N -0.508 5.508 12 C 0.038 3.962 13 C -0.540 4.540 14 H 0.052 0.948 15 C 0.014 3.986 16 N -0.922 5.922 17 Si 0.947 3.053 18 H -0.271 1.271 19 H -0.284 1.284 20 H -0.272 1.272 21 C 0.023 3.977 22 C 0.096 3.904 23 H 0.080 0.920 24 F -0.223 7.223 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.005 0.995 35 H 0.036 0.964 36 H 0.264 0.736 37 H 0.075 0.925 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.486 10.067 -7.441 19.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.131 4.131 3 H 0.102 0.898 4 C -0.141 4.141 5 C -0.078 4.078 6 N -0.274 5.274 7 C -0.054 4.054 8 C -0.009 4.009 9 H 0.131 0.869 10 C -0.052 4.052 11 N -0.186 5.186 12 C -0.001 4.001 13 C -0.578 4.578 14 H 0.070 0.930 15 C -0.185 4.185 16 N -0.562 5.562 17 Si 0.773 3.227 18 H -0.195 1.195 19 H -0.210 1.210 20 H -0.198 1.198 21 C -0.106 4.106 22 C 0.059 3.941 23 H 0.099 0.901 24 F -0.204 7.204 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.117 0.883 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.023 0.977 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.279 8.080 -7.311 19.590 hybrid contribution 1.303 0.504 1.149 1.809 sum -14.976 8.584 -6.163 18.329 Atomic orbital electron populations 1.21789 0.93429 1.02328 1.02686 1.21757 0.97486 1.00183 0.93718 0.89824 1.21594 0.93965 1.01238 0.97269 1.22265 0.96248 0.97271 0.92040 1.61859 1.12710 1.50323 1.02466 1.22093 0.86652 1.00699 0.95938 1.19322 0.96170 0.85106 1.00251 0.86878 1.29270 0.90484 0.94675 0.90815 1.80979 1.13169 1.13321 1.11120 1.18989 0.87492 0.97645 0.95926 1.21566 0.92474 1.43780 0.99987 0.93016 1.25674 0.97076 0.95719 1.00056 1.70026 1.01801 1.49590 1.34767 0.85665 0.78381 0.78134 0.80532 1.19536 1.21017 1.19751 1.22689 0.94716 0.98544 0.94620 1.21656 0.94301 0.95919 0.82199 0.90149 1.92770 1.91467 1.82314 1.53818 0.92561 0.92903 0.90450 0.88311 0.91464 0.93311 0.89358 0.90939 0.89545 0.97702 0.94557 0.92661 0.90636 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.10 71.98 0.65 -1.50 16 2 C -0.11 -1.91 2.57 -10.71 -0.03 -1.94 16 3 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 4 C -0.10 -1.56 5.38 30.65 0.16 -1.39 16 5 C 0.05 0.87 5.46 86.33 0.47 1.34 16 6 N -0.55 -13.33 4.38 -896.37 -3.92 -17.26 16 7 C 0.07 2.04 4.52 86.30 0.39 2.43 16 8 C 0.01 0.47 1.75 -12.60 -0.02 0.45 16 9 H 0.11 3.82 6.08 -2.39 -0.01 3.81 16 10 C 0.26 10.87 13.44 89.44 1.20 12.07 16 11 N -0.51 -22.90 18.54 20.01 0.37 -22.53 16 12 C 0.04 1.75 4.42 29.84 0.13 1.88 16 13 C -0.54 -28.65 8.60 25.60 0.22 -28.43 16 14 H 0.05 2.74 7.59 -2.91 -0.02 2.72 16 15 C 0.01 0.76 5.46 84.66 0.46 1.22 16 16 N -0.92 -52.63 13.29 21.45 0.28 -52.35 16 17 Si 0.95 43.52 29.54 68.60 2.03 45.54 16 18 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 19 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 21 C 0.02 0.56 4.77 86.33 0.41 0.97 16 22 C 0.10 2.18 3.42 30.65 0.10 2.29 16 23 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 24 F -0.22 -5.85 16.68 44.97 0.75 -5.10 16 25 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.05 0.86 7.88 -2.39 -0.02 0.84 16 27 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.09 1.47 8.12 -2.39 -0.02 1.45 16 32 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 37 H 0.08 2.11 5.70 -2.39 -0.01 2.10 16 38 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -62.62 314.01 4.70 -57.92 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: 1.03 Total: 4.38 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: 4.16 Total: -10.61 kcal Atomic # 7 Polarization: -88.87 SS G_CDS: -3.27 Total: -92.14 kcal Atomic # 9 Polarization: -5.85 SS G_CDS: 0.75 Total: -5.10 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -62.62 4.70 -57.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611501383.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.719 kcal (2) G-P(sol) polarization free energy of solvation -62.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds