Wall clock time and date at job start Mon Mar 30 2020 06:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50706 * 109.81931 * 2 1 4 4 H 1.07998 * 119.99501 * 239.43019 * 3 2 1 5 5 C 1.37871 * 120.00436 * 59.42921 * 3 2 1 6 6 N 1.31514 * 120.00481 * 179.97438 * 5 3 2 7 7 Si 1.86803 * 119.99886 * 359.72901 * 5 3 2 8 8 H 1.48502 * 109.46964 * 270.27509 * 7 5 3 9 9 H 1.48505 * 109.47036 * 30.26897 * 7 5 3 10 10 H 1.48490 * 109.47395 * 150.27411 * 7 5 3 11 11 C 1.54376 * 109.90902 * 239.06612 * 2 1 3 12 12 C 1.55302 * 102.25267 * 219.08534 * 11 2 1 13 13 C 1.54952 * 100.94399 * 34.13182 * 12 11 2 14 14 C 1.52997 * 110.30914 * 82.46712 * 13 12 11 15 15 C 1.52992 * 110.30993 * 204.64065 * 13 12 11 16 16 C 1.52997 * 109.47346 * 182.16317 * 15 13 12 17 17 H 1.09005 * 109.87040 * 53.99296 * 16 15 13 18 18 C 1.54101 * 109.88404 * 175.00036 * 16 15 13 19 19 C 1.54813 * 104.18809 * 121.45542 * 18 16 15 20 20 C 1.55001 * 102.09186 * 20.88030 * 19 18 16 21 21 O 1.43747 * 109.87889 * 292.83712 * 16 15 13 22 22 O 1.43240 * 109.83177 * 120.87911 * 2 1 3 23 23 H 1.09007 * 109.47255 * 60.70661 * 1 2 3 24 24 H 1.09007 * 109.46855 * 180.70256 * 1 2 3 25 25 H 1.09002 * 109.47609 * 300.70275 * 1 2 3 26 26 H 0.96999 * 120.00235 * 179.72806 * 6 5 3 27 27 H 1.09007 * 110.84960 * 337.27435 * 11 2 1 28 28 H 1.09001 * 110.85032 * 100.89235 * 11 2 1 29 29 H 1.08998 * 111.12582 * 276.20979 * 12 11 2 30 30 H 1.09004 * 111.16234 * 152.06453 * 12 11 2 31 31 H 1.08994 * 109.47568 * 303.59485 * 14 13 12 32 32 H 1.09005 * 109.46671 * 63.59346 * 14 13 12 33 33 H 1.08998 * 109.47239 * 183.58492 * 14 13 12 34 34 H 1.08996 * 109.47799 * 302.16543 * 15 13 12 35 35 H 1.09004 * 109.47253 * 62.16697 * 15 13 12 36 36 H 1.08995 * 110.48720 * 240.13233 * 18 16 15 37 37 H 1.08996 * 110.48543 * 2.64633 * 18 16 15 38 38 H 1.08991 * 110.90862 * 139.07831 * 19 18 16 39 39 H 1.08997 * 110.90671 * 262.65258 * 19 18 16 40 40 H 1.09001 * 110.61651 * 81.47626 * 20 19 18 41 41 H 1.08997 * 110.61546 * 204.31711 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0409 1.4178 0.0000 4 1 2.6715 1.7644 -0.8053 5 6 1.7034 2.2723 1.0280 6 7 2.1497 3.5094 1.0283 7 14 0.6065 1.6749 2.4170 8 1 -0.8151 1.9241 2.0672 9 1 0.8176 0.2195 2.6235 10 1 0.9448 2.4061 3.6644 11 6 2.0556 -0.7461 -1.2450 12 6 3.2755 -1.5200 -0.6749 13 6 2.7765 -1.8425 0.7562 14 6 1.8873 -3.0875 0.7405 15 6 3.9639 -2.0484 1.6988 16 6 3.4510 -2.4184 3.0919 17 1 2.7825 -3.2767 3.0248 18 6 4.6383 -2.7501 4.0165 19 6 4.5025 -1.7431 5.1845 20 6 3.0093 -1.3378 5.0919 21 8 2.7581 -1.2997 3.6707 22 8 2.0159 -0.6915 1.1564 23 1 -0.3634 0.5028 -0.8963 24 1 -0.3633 -1.0277 0.0126 25 1 -0.3634 0.5247 0.8836 26 1 1.9090 4.1117 1.7495 27 1 1.3043 -1.4357 -1.6301 28 1 2.3687 -0.0420 -2.0159 29 1 4.1637 -0.8887 -0.6483 30 1 3.4620 -2.4327 -1.2409 31 1 1.0612 -2.9353 0.0460 32 1 2.4745 -3.9493 0.4234 33 1 1.4929 -3.2649 1.7410 34 1 4.5946 -2.8520 1.3186 35 1 4.5446 -1.1279 1.7581 36 1 4.5613 -3.7733 4.3841 37 1 5.5826 -2.6041 3.4921 38 1 4.7167 -2.2234 6.1392 39 1 5.1505 -0.8801 5.0314 40 1 2.3783 -2.0849 5.5733 41 1 2.8495 -0.3566 5.5389 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689851758.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:31 Heat of formation + Delta-G solvation = -89.815160 kcal Electronic energy + Delta-G solvation = -21050.589876 eV Core-core repulsion = 18123.643570 eV Total energy + Delta-G solvation = -2926.946306 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.53372 -38.44763 -33.90711 -32.01915 -31.64358 -31.08174 -29.78842 -27.90378 -25.81112 -24.88140 -23.08729 -21.74321 -20.55462 -19.59362 -18.90762 -16.71176 -16.23654 -15.43381 -15.14107 -14.82841 -14.56015 -13.82083 -13.44973 -13.36150 -12.97735 -12.59030 -12.44980 -12.10392 -12.02436 -11.80554 -11.49532 -11.44263 -11.26122 -11.17403 -10.92721 -10.82901 -10.64147 -10.48725 -10.12369 -9.84496 -9.77727 -9.71504 -9.37477 -9.08104 -8.69358 -8.34021 -7.94713 -5.92716 -3.99621 3.53393 3.64672 3.98608 4.26605 4.73922 4.75846 4.84127 4.93511 5.13593 5.27102 5.40652 5.48629 5.51101 5.60977 5.69245 5.75147 5.81992 5.88859 5.90199 5.99883 6.03259 6.06673 6.09341 6.16224 6.25937 6.35129 6.38363 6.49332 6.58771 6.62832 6.71899 6.73944 6.88499 6.96454 7.03766 7.41613 7.47002 7.89060 8.54245 8.68804 9.07538 9.74887 11.17898 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.018922 B = 0.010912 C = 0.008272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.386562 B = 2565.300774 C = 3383.933610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.190 3.810 3 C -0.518 4.518 4 H 0.072 0.928 5 C 0.086 3.914 6 N -0.901 5.901 7 Si 0.873 3.127 8 H -0.297 1.297 9 H -0.201 1.201 10 H -0.309 1.309 11 C -0.130 4.130 12 C -0.138 4.138 13 C 0.102 3.898 14 C -0.160 4.160 15 C -0.107 4.107 16 C 0.078 3.922 17 H 0.063 0.937 18 C -0.153 4.153 19 C -0.154 4.154 20 C 0.038 3.962 21 O -0.332 6.332 22 O -0.339 6.339 23 H 0.055 0.945 24 H 0.031 0.969 25 H 0.046 0.954 26 H 0.261 0.739 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.051 0.949 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.201 -14.674 4.315 15.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.152 3.848 3 C -0.555 4.555 4 H 0.090 0.910 5 C -0.117 4.117 6 N -0.539 5.539 7 Si 0.704 3.296 8 H -0.226 1.226 9 H -0.123 1.123 10 H -0.237 1.237 11 C -0.167 4.167 12 C -0.176 4.176 13 C 0.061 3.939 14 C -0.217 4.217 15 C -0.145 4.145 16 C 0.020 3.980 17 H 0.081 0.919 18 C -0.191 4.191 19 C -0.192 4.192 20 C -0.039 4.039 21 O -0.250 6.250 22 O -0.259 6.259 23 H 0.074 0.926 24 H 0.050 0.950 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.069 0.931 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.045 -14.312 4.479 15.303 hybrid contribution -0.404 -0.233 0.671 0.818 sum 2.641 -14.546 5.150 15.655 Atomic orbital electron populations 1.22337 0.98361 0.98692 1.01089 1.20028 0.89969 0.92453 0.82347 1.21084 1.32713 0.92320 1.09349 0.91015 1.24972 0.95102 0.94151 0.97508 1.69943 1.45186 1.05667 1.33075 0.87116 0.78382 0.83611 0.80493 1.22591 1.12315 1.23731 1.22991 0.96138 0.98141 0.99456 1.23150 0.99339 0.99239 0.95877 1.21986 0.90827 0.88637 0.92413 1.22271 1.00167 0.97413 1.01891 1.21843 0.97343 1.02077 0.93219 1.22744 0.91876 0.89818 0.93519 0.91899 1.23042 0.99959 0.99223 0.96856 1.23113 0.98131 0.99595 0.98332 1.23507 0.93981 1.01391 0.85031 1.89317 1.71501 1.46991 1.17219 1.88988 1.69006 1.36937 1.30929 0.92575 0.95045 0.93567 0.92951 0.93053 0.91045 0.90825 0.92297 0.92655 0.93201 0.92346 0.91008 0.90300 0.91382 0.90633 0.91007 0.90553 0.93099 0.89536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 8.24 37.15 0.31 -3.08 16 2 C 0.19 4.58 0.78 -91.05 -0.07 4.51 16 3 C -0.52 -14.99 8.83 -34.44 -0.30 -15.30 16 4 H 0.07 2.23 7.72 -52.49 -0.41 1.82 16 5 C 0.09 2.60 5.45 -17.82 -0.10 2.50 16 6 N -0.90 -28.74 13.96 55.43 0.77 -27.96 16 7 Si 0.87 23.62 23.92 -169.99 -4.07 19.56 16 8 H -0.30 -7.93 6.87 56.52 0.39 -7.54 16 9 H -0.20 -5.30 5.20 56.52 0.29 -5.01 16 10 H -0.31 -8.51 7.11 56.52 0.40 -8.11 16 11 C -0.13 -2.62 5.69 -24.79 -0.14 -2.76 16 12 C -0.14 -2.50 6.05 -24.48 -0.15 -2.64 16 13 C 0.10 1.90 0.86 -89.59 -0.08 1.82 16 14 C -0.16 -2.56 8.36 37.16 0.31 -2.25 16 15 C -0.11 -1.77 4.11 -26.74 -0.11 -1.88 16 16 C 0.08 1.24 3.12 -26.16 -0.08 1.15 16 17 H 0.06 0.94 6.16 -51.93 -0.32 0.62 16 18 C -0.15 -1.89 6.64 -25.20 -0.17 -2.06 16 19 C -0.15 -1.93 7.15 -24.72 -0.18 -2.10 16 20 C 0.04 0.58 7.72 38.21 0.29 0.87 16 21 O -0.33 -6.51 9.71 -52.61 -0.51 -7.03 16 22 O -0.34 -7.98 5.77 -52.61 -0.30 -8.28 16 23 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 24 H 0.03 0.63 8.07 -51.92 -0.42 0.21 16 25 H 0.05 1.13 3.20 -51.93 -0.17 0.97 16 26 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 27 H 0.05 0.93 7.47 -51.93 -0.39 0.54 16 28 H 0.07 1.48 7.60 -51.93 -0.39 1.08 16 29 H 0.07 1.40 8.06 -51.93 -0.42 0.98 16 30 H 0.06 0.88 8.03 -51.93 -0.42 0.47 16 31 H 0.05 0.90 7.36 -51.93 -0.38 0.52 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.94 6.40 -51.93 -0.33 0.61 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.88 7.70 -51.93 -0.40 0.48 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 304.89 15.07 4.59 4.59 Total: -1.00 -33.14 304.89 -7.08 -40.22 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -7.10 Total: 0.12 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: -0.46 Total: -21.22 kcal Atomic # 7 Polarization: -28.74 SS G_CDS: 0.77 Total: -27.96 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.81 Total: -15.31 kcal Atomic # 14 Polarization: 23.62 SS G_CDS: -4.07 Total: 19.56 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.14 -7.08 -40.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689851758.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.595 kcal (2) G-P(sol) polarization free energy of solvation -33.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds