Wall clock time and date at job start Mon Mar 30 2020 06:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.82313 * 2 1 4 4 C 1.52997 * 109.46611 * 59.11796 * 3 2 1 5 5 H 1.08996 * 110.33508 * 305.69502 * 4 3 2 6 6 C 1.54483 * 110.36995 * 183.44587 * 4 3 2 7 7 C 1.54505 * 104.06538 * 217.07888 * 6 4 3 8 8 C 1.54476 * 104.06373 * 0.02562 * 7 6 4 9 9 O 1.44428 * 110.37338 * 67.95220 * 4 3 2 10 10 C 1.54390 * 109.83021 * 239.11878 * 2 1 3 11 11 C 1.55301 * 102.25282 * 261.75265 * 10 2 1 12 12 C 1.54954 * 100.93837 * 325.86343 * 11 10 2 13 13 C 1.53000 * 110.30994 * 277.52960 * 12 11 10 14 14 C 1.50703 * 110.30504 * 155.46152 * 12 11 10 15 15 H 1.08002 * 120.00082 * 5.29393 * 14 12 11 16 16 C 1.37877 * 119.99964 * 185.29744 * 14 12 11 17 17 N 1.31517 * 119.99957 * 5.15108 * 16 14 12 18 18 Si 1.86796 * 120.00198 * 185.15319 * 16 14 12 19 19 H 1.48503 * 109.47219 * 84.99813 * 18 16 14 20 20 H 1.48498 * 109.47291 * 204.99596 * 18 16 14 21 21 H 1.48498 * 109.47105 * 325.00004 * 18 16 14 22 22 O 1.43231 * 109.91145 * 120.93918 * 2 1 3 23 23 H 1.09003 * 109.47381 * 59.99398 * 1 2 3 24 24 H 1.09004 * 109.47373 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46943 * 299.99829 * 1 2 3 26 26 H 1.09003 * 109.47160 * 299.11786 * 3 2 1 27 27 H 1.09003 * 109.46697 * 179.11650 * 3 2 1 28 28 H 1.08999 * 110.51389 * 335.72999 * 6 4 3 29 29 H 1.09002 * 110.50810 * 98.29425 * 6 4 3 30 30 H 1.08996 * 110.51039 * 118.64636 * 7 6 4 31 31 H 1.09006 * 110.51376 * 241.22182 * 7 6 4 32 32 H 1.08997 * 110.37638 * 142.80958 * 8 7 6 33 33 H 1.09004 * 110.37437 * 265.04171 * 8 7 6 34 34 H 1.09002 * 110.84600 * 19.94122 * 10 2 1 35 35 H 1.08995 * 110.84654 * 143.35525 * 10 2 1 36 36 H 1.09000 * 111.12480 * 83.78353 * 11 10 2 37 37 H 1.08997 * 111.12744 * 207.90710 * 11 10 2 38 38 H 1.08990 * 109.46979 * 54.95332 * 13 12 11 39 39 H 1.09003 * 109.46921 * 174.95698 * 13 12 11 40 40 H 1.09004 * 109.46715 * 294.95328 * 13 12 11 41 41 H 0.96996 * 120.00426 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0488 1.4394 0.0000 4 6 1.5252 2.1701 1.2380 5 1 0.4388 2.0983 1.2890 6 6 1.9657 3.6506 1.2150 7 6 2.2640 3.9767 2.6955 8 6 1.9691 2.6545 3.4379 9 8 2.1220 1.6237 2.4343 10 6 2.0537 -0.7454 -1.2465 11 6 2.3703 -2.1557 -0.6783 12 6 2.8437 -1.7966 0.7528 13 6 4.3159 -1.3804 0.7364 14 6 2.6424 -2.9679 1.6795 15 1 2.3000 -3.9142 1.2873 16 6 2.8952 -2.8314 3.0280 17 7 3.2139 -1.6548 3.5215 18 14 2.7852 -4.3178 4.1540 19 1 4.0756 -5.0525 4.1315 20 1 2.4955 -3.8688 5.5396 21 1 1.6973 -5.2137 3.6863 22 8 2.0177 -0.6924 1.1551 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.7016 1.9508 -0.8978 27 1 3.1387 1.4327 0.0158 28 1 2.8632 3.7727 0.6086 29 1 1.1619 4.2824 0.8370 30 1 3.3090 4.2599 2.8211 31 1 1.6084 4.7717 3.0511 32 1 2.6843 2.5057 4.2468 33 1 0.9512 2.6572 3.8280 34 1 1.2845 -0.8013 -2.0167 35 1 2.9541 -0.2686 -1.6337 36 1 1.4760 -2.7783 -0.6517 37 1 3.1655 -2.6386 -1.2461 38 1 4.4557 -0.5678 0.0236 39 1 4.6099 -1.0458 1.7313 40 1 4.9307 -2.2312 0.4428 41 1 3.3922 -1.5588 4.4701 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689851767.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:37 Heat of formation + Delta-G solvation = -97.365160 kcal Electronic energy + Delta-G solvation = -20940.044194 eV Core-core repulsion = 18012.770496 eV Total energy + Delta-G solvation = -2927.273698 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.24682 -38.09381 -33.68103 -31.77083 -31.39087 -30.81172 -29.37761 -27.10454 -25.78627 -24.95099 -22.97133 -21.39422 -20.36817 -19.42148 -18.57960 -16.25242 -15.97993 -15.05694 -14.99502 -14.63796 -14.47801 -13.96460 -13.31353 -13.12295 -12.56444 -12.23057 -12.16179 -11.80485 -11.67962 -11.50960 -11.31030 -11.09533 -11.01096 -10.89195 -10.77757 -10.55132 -10.48883 -10.33502 -10.25213 -10.07591 -9.91563 -9.42925 -9.26635 -8.87827 -8.71485 -8.31259 -7.63648 -5.74389 -3.89875 3.40219 3.46704 3.49277 4.54168 4.56803 4.94872 5.04172 5.14353 5.31912 5.46904 5.58368 5.60363 5.68727 5.72672 5.89092 5.90054 5.99393 6.04343 6.09966 6.17524 6.23669 6.26587 6.32494 6.37079 6.46530 6.54780 6.63121 6.72796 6.77572 6.88828 6.91943 7.03600 7.15540 7.25763 7.49690 7.68658 7.95749 8.21817 8.56294 8.87658 9.32257 9.78293 11.26985 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.020194 B = 0.009021 C = 0.007085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.235540 B = 3103.067205 C = 3950.900104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.097 3.903 3 C -0.112 4.112 4 C 0.079 3.921 5 H 0.060 0.940 6 C -0.153 4.153 7 C -0.154 4.154 8 C 0.040 3.960 9 O -0.306 6.306 10 C -0.147 4.147 11 C -0.143 4.143 12 C 0.233 3.767 13 C -0.138 4.138 14 C -0.532 4.532 15 H 0.057 0.943 16 C 0.083 3.917 17 N -0.837 5.837 18 Si 0.879 3.121 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.276 1.276 22 O -0.308 6.308 23 H 0.044 0.956 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.047 0.953 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.010 0.990 39 H 0.077 0.923 40 H 0.031 0.969 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.794 9.641 -5.429 11.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.055 3.945 3 C -0.150 4.150 4 C 0.020 3.980 5 H 0.078 0.922 6 C -0.191 4.191 7 C -0.192 4.192 8 C -0.038 4.038 9 O -0.224 6.224 10 C -0.185 4.185 11 C -0.180 4.180 12 C 0.195 3.805 13 C -0.196 4.196 14 C -0.570 4.570 15 H 0.075 0.925 16 C -0.123 4.123 17 N -0.471 5.471 18 Si 0.707 3.293 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.202 1.202 22 O -0.227 6.227 23 H 0.063 0.937 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.029 0.971 39 H 0.096 0.904 40 H 0.050 0.950 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.681 9.593 -5.015 11.152 hybrid contribution -0.127 -0.514 0.396 0.661 sum -2.808 9.079 -4.620 10.566 Atomic orbital electron populations 1.22077 0.96392 1.01761 1.00251 1.21779 0.92765 0.91413 0.88501 1.21989 1.01574 0.96387 0.95055 1.22892 0.96811 0.90199 0.88073 0.92223 1.23052 1.01523 0.97771 0.96785 1.22936 1.01836 0.98780 0.95663 1.23328 1.00251 0.86830 0.93387 1.89774 1.79012 1.35396 1.18189 1.23147 1.00030 0.97741 0.97551 1.23308 1.00433 0.94914 0.99382 1.19805 0.87329 0.85120 0.88237 1.22023 0.98777 0.97232 1.01579 1.20901 1.48167 0.95326 0.92557 0.92479 1.24996 0.94433 0.94949 0.97971 1.70118 1.43561 1.21020 1.12437 0.86855 0.78232 0.83831 0.80400 1.20790 1.21413 1.20153 1.89036 1.66218 1.43405 1.24031 0.93671 0.92545 0.92507 0.91738 0.91197 0.91174 0.91554 0.91289 0.91572 0.89742 0.93508 0.92362 0.92041 0.92013 0.92502 0.97141 0.90416 0.94984 0.93495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 8.37 37.15 0.31 -2.36 16 2 C 0.10 1.95 0.93 -89.89 -0.08 1.86 16 3 C -0.11 -1.99 4.06 -26.73 -0.11 -2.10 16 4 C 0.08 1.37 2.99 -25.95 -0.08 1.30 16 5 H 0.06 1.03 6.21 -51.93 -0.32 0.70 16 6 C -0.15 -2.13 6.63 -25.16 -0.17 -2.30 16 7 C -0.15 -2.09 7.09 -25.17 -0.18 -2.26 16 8 C 0.04 0.67 7.63 37.93 0.29 0.96 16 9 O -0.31 -6.62 9.94 -54.05 -0.54 -7.15 16 10 C -0.15 -2.73 5.70 -24.78 -0.14 -2.88 16 11 C -0.14 -3.08 6.01 -24.48 -0.15 -3.22 16 12 C 0.23 5.94 0.72 -90.74 -0.07 5.88 16 13 C -0.14 -3.44 8.65 37.16 0.32 -3.12 16 14 C -0.53 -15.04 8.26 -34.44 -0.28 -15.33 16 15 H 0.06 1.60 7.78 -52.49 -0.41 1.19 16 16 C 0.08 2.37 5.25 -17.82 -0.09 2.27 16 17 N -0.84 -24.54 11.29 55.43 0.63 -23.91 16 18 Si 0.88 21.73 29.54 -169.99 -5.02 16.71 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 O -0.31 -7.87 7.81 -54.05 -0.42 -8.29 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.06 1.05 6.33 -51.93 -0.33 0.72 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.07 1.34 8.12 -51.93 -0.42 0.92 16 28 H 0.07 0.95 7.87 -51.93 -0.41 0.54 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.94 7.82 -51.93 -0.41 0.54 16 35 H 0.06 1.09 7.45 -51.93 -0.39 0.70 16 36 H 0.06 1.34 8.05 -51.93 -0.42 0.92 16 37 H 0.06 1.15 8.03 -51.93 -0.42 0.73 16 38 H 0.01 0.22 7.38 -51.93 -0.38 -0.16 16 39 H 0.08 2.15 6.68 -51.93 -0.35 1.81 16 40 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 315.52 15.07 4.75 4.75 Total: -1.00 -30.86 315.52 -8.21 -39.08 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -7.19 Total: 0.11 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: -0.42 Total: -21.30 kcal Atomic # 7 Polarization: -24.54 SS G_CDS: 0.63 Total: -23.91 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.96 Total: -15.45 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.86 -8.21 -39.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689851767.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.288 kcal (2) G-P(sol) polarization free energy of solvation -30.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds