Wall clock time and date at job start Mon Mar 30 2020 06:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.48026 * 2 1 4 4 C 1.53003 * 109.47476 * 301.16101 * 3 2 1 5 5 H 1.08993 * 109.81972 * 304.53279 * 4 3 2 6 6 C 1.54382 * 109.83206 * 183.54627 * 4 3 2 7 7 C 1.55301 * 102.25110 * 219.13092 * 6 4 3 8 8 C 1.54943 * 100.94486 * 34.13165 * 7 6 4 9 9 O 1.43236 * 109.82782 * 65.41040 * 4 3 2 10 10 C 1.53090 * 109.47943 * 239.97950 * 2 1 3 11 11 C 1.53181 * 109.16024 * 182.41710 * 10 2 1 12 12 C 1.53180 * 109.04481 * 56.96647 * 11 10 2 13 13 C 1.53091 * 109.16220 * 303.02396 * 12 11 10 14 14 H 1.09007 * 109.47960 * 297.62799 * 13 12 11 15 15 C 1.50691 * 109.49169 * 177.59608 * 13 12 11 16 16 H 1.08007 * 120.00045 * 354.84128 * 15 13 12 17 17 C 1.37884 * 120.00317 * 174.83283 * 15 13 12 18 18 N 1.31515 * 120.00161 * 183.61731 * 17 15 13 19 19 Si 1.86796 * 119.99493 * 3.62119 * 17 15 13 20 20 H 1.48503 * 109.47090 * 93.67079 * 19 17 15 21 21 H 1.48500 * 109.46907 * 213.67086 * 19 17 15 22 22 H 1.48499 * 109.47486 * 333.67082 * 19 17 15 23 23 O 1.42894 * 109.48222 * 120.02611 * 2 1 3 24 24 H 1.09001 * 109.46855 * 69.11370 * 1 2 3 25 25 H 1.08996 * 109.47091 * 309.11411 * 1 2 3 26 26 H 1.09003 * 109.46980 * 189.10985 * 1 2 3 27 27 H 1.09005 * 109.46996 * 61.15845 * 3 2 1 28 28 H 1.08994 * 109.47488 * 181.15871 * 3 2 1 29 29 H 1.09004 * 110.84593 * 337.31673 * 6 4 3 30 30 H 1.08996 * 110.84623 * 100.93611 * 6 4 3 31 31 H 1.08997 * 111.12548 * 276.21448 * 7 6 4 32 32 H 1.09004 * 111.16571 * 152.06723 * 7 6 4 33 33 H 1.09001 * 110.31240 * 204.63800 * 8 7 6 34 34 H 1.09004 * 110.31092 * 82.47126 * 8 7 6 35 35 H 1.09000 * 109.52456 * 302.31294 * 10 2 1 36 36 H 1.08999 * 109.52605 * 62.50668 * 10 2 1 37 37 H 1.08994 * 109.53965 * 297.09557 * 11 10 2 38 38 H 1.09003 * 109.61689 * 176.87988 * 11 10 2 39 39 H 1.08993 * 109.52500 * 183.11702 * 12 11 10 40 40 H 1.08999 * 109.57218 * 62.96050 * 12 11 10 41 41 H 0.96991 * 119.99561 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 1.5067 2.1722 -1.2344 5 1 1.7819 1.6243 -2.1354 6 6 2.0879 3.6014 -1.2899 7 6 0.8728 4.4324 -1.7845 8 6 -0.2972 3.6726 -1.1104 9 8 0.0813 2.2875 -1.1523 10 6 2.0405 -0.7221 -1.2497 11 6 3.5711 -0.7709 -1.2121 12 6 4.0176 -1.4600 0.0810 13 6 3.4307 -0.7092 1.2791 14 1 3.8192 0.3091 1.2957 15 6 3.8167 -1.4153 2.5531 16 1 4.3487 -2.3544 2.5103 17 6 3.4910 -0.8627 3.7736 18 7 3.8895 -1.4418 4.8852 19 14 2.4837 0.7086 3.8483 20 1 1.0448 0.3681 3.9857 21 1 2.9147 1.5179 5.0164 22 1 2.6907 1.4891 2.6020 23 8 2.0066 -0.6741 1.1663 24 1 -0.3633 0.3664 -0.9602 25 1 -0.3633 0.6483 0.7973 26 1 -0.3633 -1.0147 0.1627 27 1 1.6940 1.9503 0.9002 28 1 3.1300 1.4424 -0.0208 29 1 2.4053 3.9297 -0.3001 30 1 2.9119 3.6576 -2.0012 31 1 0.7894 4.3980 -2.8708 32 1 0.9291 5.4615 -1.4297 33 1 -1.2210 3.8294 -1.6673 34 1 -0.4167 4.0011 -0.0779 35 1 1.6443 -1.7373 -1.2712 36 1 1.7149 -0.1840 -2.1399 37 1 3.9690 0.2435 -1.2408 38 1 3.9405 -1.3319 -2.0706 39 1 5.1058 -1.4498 0.1422 40 1 3.6622 -2.4904 0.0871 41 1 3.6600 -1.0531 5.7437 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689855997.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:26 Heat of formation + Delta-G solvation = -104.987381 kcal Electronic energy + Delta-G solvation = -20823.558041 eV Core-core repulsion = 17895.953818 eV Total energy + Delta-G solvation = -2927.604223 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.03990 -38.46933 -33.73363 -32.72038 -32.19561 -32.03945 -29.89989 -27.64983 -25.96299 -25.19557 -22.13266 -21.80435 -21.39870 -20.49604 -18.10339 -16.90343 -16.76697 -16.17942 -15.18111 -15.06835 -14.52391 -14.16678 -13.85511 -13.61765 -13.28500 -13.04332 -12.57702 -12.35305 -12.11595 -12.04359 -11.58402 -11.44394 -11.39704 -11.24115 -11.03998 -10.88476 -10.84382 -10.58460 -10.52457 -10.29530 -9.81049 -9.68465 -9.49569 -9.32251 -8.81728 -8.56440 -8.12715 -6.07925 -4.15488 3.43267 3.49209 3.57621 3.87413 4.45898 4.51279 4.65172 4.79199 4.89809 5.14700 5.17422 5.34840 5.36956 5.46289 5.53132 5.58550 5.62430 5.67537 5.74885 5.79731 5.83765 5.88061 5.99810 6.05405 6.20682 6.31120 6.36995 6.42981 6.51685 6.55774 6.65409 6.71406 6.83036 6.87934 6.94999 7.17491 7.28294 7.71238 8.47237 8.68126 8.96331 9.55701 11.02247 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.023429 B = 0.008279 C = 0.007126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.826846 B = 3381.044447 C = 3928.299435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.112 3.888 3 C -0.156 4.156 4 C 0.082 3.918 5 H 0.082 0.918 6 C -0.153 4.153 7 C -0.156 4.156 8 C 0.044 3.956 9 O -0.367 6.367 10 C -0.138 4.138 11 C -0.124 4.124 12 C -0.133 4.133 13 C 0.180 3.820 14 H 0.020 0.980 15 C -0.510 4.510 16 H 0.078 0.922 17 C 0.081 3.919 18 N -0.893 5.893 19 Si 0.901 3.099 20 H -0.277 1.277 21 H -0.304 1.304 22 H -0.259 1.259 23 O -0.372 6.372 24 H 0.077 0.923 25 H 0.051 0.949 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.398 10.660 -14.642 18.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.071 3.929 3 C -0.194 4.194 4 C 0.025 3.975 5 H 0.100 0.900 6 C -0.191 4.191 7 C -0.193 4.193 8 C -0.032 4.032 9 O -0.287 6.287 10 C -0.175 4.175 11 C -0.161 4.161 12 C -0.171 4.171 13 C 0.124 3.876 14 H 0.037 0.963 15 C -0.547 4.547 16 H 0.096 0.904 17 C -0.123 4.123 18 N -0.531 5.531 19 Si 0.730 3.270 20 H -0.203 1.203 21 H -0.232 1.232 22 H -0.183 1.183 23 O -0.293 6.293 24 H 0.095 0.905 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.648 10.399 -14.311 18.570 hybrid contribution -0.151 1.057 0.050 1.069 sum -5.799 11.456 -14.261 19.190 Atomic orbital electron populations 1.21795 0.93305 1.00932 1.02333 1.21218 0.94379 0.89781 0.87474 1.22699 1.01395 0.97531 0.97775 1.22805 0.80842 0.95291 0.98536 0.90048 1.23199 0.98386 0.94945 1.02528 1.23238 0.95160 0.99812 1.01108 1.23361 0.97492 0.82612 0.99761 1.88593 1.21494 1.23370 1.95205 1.22160 0.96191 1.01125 0.98049 1.21692 0.95578 1.00344 0.98515 1.22049 1.00303 1.00257 0.94526 1.20287 0.78145 0.95088 0.94030 0.96269 1.20963 1.36102 1.09675 0.87941 0.90366 1.25083 0.94054 0.97742 0.95433 1.69934 1.44944 1.40463 0.97749 0.86479 0.80908 0.82859 0.76710 1.20296 1.23227 1.18327 1.88297 1.25233 1.75677 1.40080 0.90489 0.92978 0.93147 0.91001 0.90298 0.90388 0.90225 0.90641 0.90339 0.90189 0.92533 0.91635 0.92189 0.92634 0.92967 0.92135 0.92092 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 7.56 37.16 0.28 -1.98 16 2 C 0.11 2.13 0.88 -90.57 -0.08 2.05 16 3 C -0.16 -2.73 2.96 -26.73 -0.08 -2.81 16 4 C 0.08 1.14 3.21 -26.01 -0.08 1.05 16 5 H 0.08 1.07 6.21 -51.93 -0.32 0.75 16 6 C -0.15 -1.73 6.54 -24.79 -0.16 -1.89 16 7 C -0.16 -1.47 7.15 -24.49 -0.18 -1.64 16 8 C 0.04 0.49 7.78 38.18 0.30 0.79 16 9 O -0.37 -5.21 7.57 -35.23 -0.27 -5.47 16 10 C -0.14 -2.29 4.66 -26.59 -0.12 -2.42 16 11 C -0.12 -2.07 5.72 -26.54 -0.15 -2.22 16 12 C -0.13 -2.75 5.36 -26.59 -0.14 -2.90 16 13 C 0.18 4.38 1.61 -27.84 -0.04 4.33 16 14 H 0.02 0.48 5.20 -51.92 -0.27 0.21 16 15 C -0.51 -14.82 9.35 -34.44 -0.32 -15.14 16 16 H 0.08 2.43 7.99 -52.48 -0.42 2.01 16 17 C 0.08 2.41 5.47 -17.82 -0.10 2.32 16 18 N -0.89 -27.85 13.96 55.43 0.77 -27.08 16 19 Si 0.90 23.32 26.41 -169.99 -4.49 18.83 16 20 H -0.28 -7.33 7.11 56.52 0.40 -6.93 16 21 H -0.30 -7.79 7.11 56.52 0.40 -7.38 16 22 H -0.26 -6.25 4.64 56.52 0.26 -5.98 16 23 O -0.37 -8.97 7.88 -35.23 -0.28 -9.25 16 24 H 0.08 1.23 5.95 -51.93 -0.31 0.92 16 25 H 0.05 0.97 8.12 -51.93 -0.42 0.55 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.07 1.39 6.94 -51.93 -0.36 1.03 16 28 H 0.08 1.40 4.98 -51.93 -0.26 1.15 16 29 H 0.08 0.93 7.85 -51.93 -0.41 0.52 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 0.86 6.25 -51.93 -0.32 0.54 16 37 H 0.05 0.88 6.59 -51.93 -0.34 0.53 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 298.72 15.07 4.50 4.50 Total: -1.00 -31.53 298.72 -7.58 -39.11 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -6.94 Total: -0.20 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: -0.88 Total: -20.45 kcal Atomic # 7 Polarization: -27.85 SS G_CDS: 0.77 Total: -27.08 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.54 Total: -14.72 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -4.49 Total: 18.83 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.53 -7.58 -39.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689855997.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.877 kcal (2) G-P(sol) polarization free energy of solvation -31.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds