Wall clock time and date at job start Mon Mar 30 2020 06:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.48026 * 2 1 4 4 C 1.53003 * 109.47476 * 301.16101 * 3 2 1 5 5 H 1.08993 * 109.81972 * 304.53279 * 4 3 2 6 6 C 1.54382 * 109.83206 * 183.54627 * 4 3 2 7 7 C 1.55301 * 102.25110 * 219.13092 * 6 4 3 8 8 C 1.54943 * 100.94486 * 34.13165 * 7 6 4 9 9 O 1.43236 * 109.82782 * 65.41040 * 4 3 2 10 10 C 1.53090 * 109.47943 * 239.97950 * 2 1 3 11 11 C 1.53181 * 109.16024 * 182.41710 * 10 2 1 12 12 C 1.53180 * 109.04481 * 56.96647 * 11 10 2 13 13 C 1.53091 * 109.16220 * 303.02396 * 12 11 10 14 14 H 1.09007 * 109.47960 * 297.62799 * 13 12 11 15 15 C 1.50691 * 109.49169 * 177.59608 * 13 12 11 16 16 H 1.08007 * 120.00045 * 354.84128 * 15 13 12 17 17 C 1.37884 * 120.00317 * 174.83283 * 15 13 12 18 18 N 1.31515 * 120.00161 * 183.61731 * 17 15 13 19 19 Si 1.86796 * 119.99493 * 3.62119 * 17 15 13 20 20 H 1.48503 * 109.47090 * 93.67079 * 19 17 15 21 21 H 1.48500 * 109.46907 * 213.67086 * 19 17 15 22 22 H 1.48499 * 109.47486 * 333.67082 * 19 17 15 23 23 O 1.42894 * 109.48222 * 120.02611 * 2 1 3 24 24 H 1.09001 * 109.46855 * 69.11370 * 1 2 3 25 25 H 1.08996 * 109.47091 * 309.11411 * 1 2 3 26 26 H 1.09003 * 109.46980 * 189.10985 * 1 2 3 27 27 H 1.09005 * 109.46996 * 61.15845 * 3 2 1 28 28 H 1.08994 * 109.47488 * 181.15871 * 3 2 1 29 29 H 1.09004 * 110.84593 * 337.31673 * 6 4 3 30 30 H 1.08996 * 110.84623 * 100.93611 * 6 4 3 31 31 H 1.08997 * 111.12548 * 276.21448 * 7 6 4 32 32 H 1.09004 * 111.16571 * 152.06723 * 7 6 4 33 33 H 1.09001 * 110.31240 * 204.63800 * 8 7 6 34 34 H 1.09004 * 110.31092 * 82.47126 * 8 7 6 35 35 H 1.09000 * 109.52456 * 302.31294 * 10 2 1 36 36 H 1.08999 * 109.52605 * 62.50668 * 10 2 1 37 37 H 1.08994 * 109.53965 * 297.09557 * 11 10 2 38 38 H 1.09003 * 109.61689 * 176.87988 * 11 10 2 39 39 H 1.08993 * 109.52500 * 183.11702 * 12 11 10 40 40 H 1.08999 * 109.57218 * 62.96050 * 12 11 10 41 41 H 0.96991 * 119.99561 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 1.5067 2.1722 -1.2344 5 1 1.7819 1.6243 -2.1354 6 6 2.0879 3.6014 -1.2899 7 6 0.8728 4.4324 -1.7845 8 6 -0.2972 3.6726 -1.1104 9 8 0.0813 2.2875 -1.1523 10 6 2.0405 -0.7221 -1.2497 11 6 3.5711 -0.7709 -1.2121 12 6 4.0176 -1.4600 0.0810 13 6 3.4307 -0.7092 1.2791 14 1 3.8192 0.3091 1.2957 15 6 3.8167 -1.4153 2.5531 16 1 4.3487 -2.3544 2.5103 17 6 3.4910 -0.8627 3.7736 18 7 3.8895 -1.4418 4.8852 19 14 2.4837 0.7086 3.8483 20 1 1.0448 0.3681 3.9857 21 1 2.9147 1.5179 5.0164 22 1 2.6907 1.4891 2.6020 23 8 2.0066 -0.6741 1.1663 24 1 -0.3633 0.3664 -0.9602 25 1 -0.3633 0.6483 0.7973 26 1 -0.3633 -1.0147 0.1627 27 1 1.6940 1.9503 0.9002 28 1 3.1300 1.4424 -0.0208 29 1 2.4053 3.9297 -0.3001 30 1 2.9119 3.6576 -2.0012 31 1 0.7894 4.3980 -2.8708 32 1 0.9291 5.4615 -1.4297 33 1 -1.2210 3.8294 -1.6673 34 1 -0.4167 4.0011 -0.0779 35 1 1.6443 -1.7373 -1.2712 36 1 1.7149 -0.1840 -2.1399 37 1 3.9690 0.2435 -1.2408 38 1 3.9405 -1.3319 -2.0706 39 1 5.1058 -1.4498 0.1422 40 1 3.6622 -2.4904 0.0871 41 1 3.6600 -1.0531 5.7437 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689855997.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:25 Heat of formation + Delta-G solvation = -125.049922 kcal Electronic energy + Delta-G solvation = -20824.428018 eV Core-core repulsion = 17895.953818 eV Total energy + Delta-G solvation = -2928.474200 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.31898 -39.76054 -35.51232 -34.34578 -33.97292 -33.09360 -31.18271 -29.34282 -27.14561 -26.93232 -23.74190 -22.82437 -22.43689 -22.09128 -19.55399 -19.01209 -17.87210 -17.31141 -16.91914 -16.50807 -15.94836 -15.76530 -15.13404 -14.95276 -14.85638 -14.36504 -14.17581 -13.84107 -13.45078 -13.24086 -13.15974 -12.97123 -12.82590 -12.61481 -12.38555 -12.33015 -12.16168 -11.92332 -11.79014 -11.67576 -11.56399 -11.39559 -11.21488 -10.92474 -10.58276 -10.31413 -9.82309 -8.38308 -6.49763 1.30955 1.38403 1.48986 2.34012 2.78766 2.96627 3.50010 3.64920 3.75870 3.99020 4.00490 4.04367 4.12050 4.21537 4.29950 4.36063 4.41939 4.50489 4.65186 4.71525 4.79112 4.80074 4.85994 4.92024 4.94833 4.99617 5.05146 5.07949 5.14829 5.17480 5.22861 5.28205 5.30638 5.44153 5.48760 5.61857 5.66557 6.19515 6.22910 6.56385 6.98060 7.26293 8.75735 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.023429 B = 0.008279 C = 0.007126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.826846 B = 3381.044447 C = 3928.299435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.097 3.903 3 C -0.152 4.152 4 C 0.086 3.914 5 H 0.097 0.903 6 C -0.154 4.154 7 C -0.145 4.145 8 C 0.035 3.965 9 O -0.387 6.387 10 C -0.132 4.132 11 C -0.115 4.115 12 C -0.133 4.133 13 C 0.186 3.814 14 H 0.021 0.979 15 C -0.522 4.522 16 H 0.040 0.960 17 C 0.027 3.973 18 N -0.939 5.939 19 Si 0.960 3.040 20 H -0.287 1.287 21 H -0.298 1.298 22 H -0.235 1.235 23 O -0.404 6.404 24 H 0.101 0.899 25 H 0.036 0.964 26 H 0.041 0.959 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.048 0.952 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.044 0.956 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.135 12.997 -17.843 22.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.058 3.942 3 C -0.190 4.190 4 C 0.029 3.971 5 H 0.115 0.885 6 C -0.191 4.191 7 C -0.182 4.182 8 C -0.041 4.041 9 O -0.307 6.307 10 C -0.170 4.170 11 C -0.152 4.152 12 C -0.171 4.171 13 C 0.131 3.869 14 H 0.038 0.962 15 C -0.560 4.560 16 H 0.059 0.941 17 C -0.172 4.172 18 N -0.579 5.579 19 Si 0.787 3.213 20 H -0.213 1.213 21 H -0.225 1.225 22 H -0.159 1.159 23 O -0.325 6.325 24 H 0.119 0.881 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.118 0.882 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.117 0.883 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.112 0.888 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.080 0.920 40 H 0.063 0.937 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.382 12.744 -17.535 22.597 hybrid contribution 0.044 0.261 1.041 1.074 sum -6.338 13.005 -16.494 21.940 Atomic orbital electron populations 1.21765 0.92541 1.00193 1.03091 1.21624 0.95033 0.90811 0.86762 1.22633 1.01110 0.96456 0.98827 1.22774 0.80978 0.96576 0.96774 0.88523 1.23214 0.99700 0.93546 1.02678 1.23224 0.93031 1.00046 1.01897 1.23569 0.99120 0.81471 0.99972 1.88532 1.21587 1.25389 1.95174 1.22127 0.96069 1.00875 0.97888 1.21654 0.95578 1.01107 0.96899 1.21977 1.00212 0.99369 0.95506 1.20016 0.78823 0.94812 0.93272 0.96151 1.21309 1.35649 1.08488 0.90522 0.94129 1.25903 0.95185 1.01021 0.95113 1.70053 1.46929 1.42436 0.98448 0.85558 0.78401 0.79571 0.77814 1.21350 1.22536 1.15863 1.88153 1.24383 1.76924 1.43023 0.88068 0.94503 0.93953 0.93582 0.90728 0.91559 0.88220 0.89013 0.88773 0.88319 0.93403 0.92322 0.88790 0.91106 0.89940 0.91974 0.93694 0.92335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.06 7.56 71.98 0.54 -3.52 16 2 C 0.10 3.52 0.88 -10.76 -0.01 3.51 16 3 C -0.15 -4.98 2.96 30.60 0.09 -4.89 16 4 C 0.09 2.07 3.21 31.06 0.10 2.17 16 5 H 0.10 2.04 6.21 -2.39 -0.01 2.03 16 6 C -0.15 -2.88 6.54 31.85 0.21 -2.67 16 7 C -0.14 -2.12 7.15 32.05 0.23 -1.89 16 8 C 0.03 0.66 7.78 72.65 0.56 1.22 16 9 O -0.39 -9.73 7.57 -148.98 -1.13 -10.86 16 10 C -0.13 -3.98 4.66 30.69 0.14 -3.83 16 11 C -0.12 -3.46 5.72 30.72 0.18 -3.28 16 12 C -0.13 -5.38 5.36 30.68 0.16 -5.22 16 13 C 0.19 9.11 1.61 29.88 0.05 9.15 16 14 H 0.02 1.01 5.20 -2.38 -0.01 0.99 16 15 C -0.52 -31.48 9.35 25.60 0.24 -31.24 16 16 H 0.04 2.66 7.99 -2.91 -0.02 2.64 16 17 C 0.03 1.68 5.47 84.66 0.46 2.14 16 18 N -0.94 -60.76 13.96 21.45 0.30 -60.46 16 19 Si 0.96 49.21 26.41 68.60 1.81 51.02 16 20 H -0.29 -15.08 7.11 99.48 0.71 -14.37 16 21 H -0.30 -14.79 7.11 99.48 0.71 -14.09 16 22 H -0.24 -11.01 4.64 99.48 0.46 -10.55 16 23 O -0.40 -19.37 7.88 -148.98 -1.17 -20.54 16 24 H 0.10 2.95 5.95 -2.39 -0.01 2.93 16 25 H 0.04 1.33 8.12 -2.39 -0.02 1.31 16 26 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.05 1.72 6.94 -2.38 -0.02 1.70 16 28 H 0.07 2.47 4.98 -2.39 -0.01 2.46 16 29 H 0.07 1.40 7.85 -2.38 -0.02 1.38 16 30 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.09 2.23 6.25 -2.39 -0.01 2.22 16 37 H 0.07 1.94 6.59 -2.39 -0.02 1.93 16 38 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.27 16.19 8.31 -92.71 -0.77 15.41 16 Total: -1.00 -71.01 298.72 3.52 -67.49 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 0.75 Total: 11.69 kcal Atomic # 6 Polarization: -41.31 SS G_CDS: 2.96 Total: -38.34 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: 0.30 Total: -60.46 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -2.30 Total: -31.40 kcal Atomic # 14 Polarization: 49.21 SS G_CDS: 1.81 Total: 51.02 kcal Total: -71.01 3.52 -67.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689855997.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.561 kcal (2) G-P(sol) polarization free energy of solvation -71.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds