Wall clock time and date at job start Mon Mar 30 2020 06:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52996 * 109.48139 * 2 1 4 4 C 1.53005 * 109.47160 * 179.79479 * 3 2 1 5 5 H 1.08993 * 110.80487 * 50.84027 * 4 3 2 6 6 C 1.54819 * 110.90345 * 174.47024 * 4 3 2 7 7 C 1.54100 * 104.18642 * 139.11428 * 6 4 3 8 8 O 1.43743 * 107.41939 * 1.94937 * 7 6 4 9 9 C 1.44574 * 106.87239 * 333.67464 * 8 7 6 10 10 C 1.53097 * 109.49172 * 239.97573 * 2 1 3 11 11 C 1.53180 * 109.15965 * 297.61824 * 10 2 1 12 12 C 1.53174 * 109.03900 * 303.01782 * 11 10 2 13 13 C 1.53093 * 109.16166 * 56.98218 * 12 11 10 14 14 H 1.08996 * 109.48408 * 62.37792 * 13 12 11 15 15 C 1.50702 * 109.48734 * 182.40583 * 13 12 11 16 16 H 1.07995 * 120.00452 * 359.94487 * 15 13 12 17 17 C 1.37881 * 119.99817 * 179.97438 * 15 13 12 18 18 N 1.31512 * 120.00047 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 119.99907 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46964 * 90.00349 * 19 17 15 21 21 H 1.48500 * 109.46895 * 209.99798 * 19 17 15 22 22 H 1.48494 * 109.47186 * 330.00040 * 19 17 15 23 23 O 1.42904 * 109.41533 * 302.38715 * 13 12 11 24 24 H 1.08998 * 109.47755 * 64.03878 * 1 2 3 25 25 H 1.09005 * 109.47285 * 184.03181 * 1 2 3 26 26 H 1.08997 * 109.47614 * 304.03340 * 1 2 3 27 27 H 1.09002 * 109.46903 * 59.79707 * 3 2 1 28 28 H 1.08998 * 109.47281 * 299.79326 * 3 2 1 29 29 H 1.08998 * 110.48804 * 20.43718 * 6 4 3 30 30 H 1.09001 * 110.59385 * 257.84280 * 6 4 3 31 31 H 1.08994 * 109.88148 * 121.44832 * 7 6 4 32 32 H 1.08997 * 109.87802 * 242.45572 * 7 6 4 33 33 H 1.08999 * 110.50138 * 281.37512 * 9 8 7 34 34 H 1.09008 * 110.77293 * 158.50928 * 9 8 7 35 35 H 1.08999 * 109.52232 * 57.52362 * 10 2 1 36 36 H 1.08999 * 109.52267 * 177.71525 * 10 2 1 37 37 H 1.09003 * 109.54280 * 183.14998 * 11 10 2 38 38 H 1.09003 * 109.61748 * 62.93128 * 11 10 2 39 39 H 1.08996 * 109.52387 * 297.07539 * 12 11 10 40 40 H 1.09001 * 109.57937 * 176.91799 * 12 11 10 41 41 H 0.97001 * 120.00226 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 3.5702 1.4421 0.0052 5 1 3.9599 0.7977 -0.7828 6 6 4.1233 2.8814 -0.1341 7 6 5.3099 2.9267 0.8481 8 8 5.4316 1.6208 1.4364 9 6 4.1193 1.0159 1.3905 10 6 2.0407 -0.7221 -1.2496 11 6 1.5762 -2.1813 -1.2122 12 6 2.0769 -2.8321 0.0808 13 6 1.5647 -2.0285 1.2790 14 1 0.4752 -2.0552 1.2957 15 6 2.1017 -2.6280 2.5531 16 1 2.7433 -3.4958 2.5131 17 6 1.7734 -2.0689 3.7699 18 7 0.9921 -1.0122 3.8187 19 14 2.4385 -2.8124 5.3493 20 1 3.7369 -2.1760 5.6876 21 1 1.4711 -2.5797 6.4516 22 1 2.6362 -4.2725 5.1641 23 8 2.0066 -0.6742 1.1664 24 1 -0.3634 0.4498 -0.9239 25 1 -0.3634 -1.0252 0.0723 26 1 -0.3634 0.5751 0.8516 27 1 1.6739 1.9573 0.8882 28 1 1.6800 1.9552 -0.8918 29 1 3.3648 3.6108 0.1501 30 1 4.4643 3.0642 -1.1531 31 1 6.2251 3.1785 0.3124 32 1 5.1198 3.6669 1.6252 33 1 3.4902 1.4076 2.1898 34 1 4.1914 -0.0697 1.4573 35 1 1.6423 -0.2357 -2.1399 36 1 3.1300 -0.6871 -1.2708 37 1 1.9831 -2.7157 -2.0707 38 1 0.4872 -2.2195 -1.2417 39 1 3.1668 -2.8398 0.0865 40 1 1.7052 -3.8550 0.1427 41 1 0.7608 -0.6190 4.6748 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689856548.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:37 Heat of formation + Delta-G solvation = -112.104408 kcal Electronic energy + Delta-G solvation = -20838.981908 eV Core-core repulsion = 17911.069068 eV Total energy + Delta-G solvation = -2927.912840 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.48165 -38.22986 -34.06130 -32.64791 -32.18594 -30.91211 -28.92112 -27.68202 -25.58784 -24.94505 -22.28792 -22.11788 -20.73549 -19.94067 -18.03337 -16.57800 -16.10634 -15.45174 -14.91204 -14.65697 -14.53619 -14.22651 -13.86139 -13.37557 -13.27875 -12.67089 -12.36648 -12.15957 -11.90128 -11.70531 -11.44868 -11.22187 -11.15250 -10.89678 -10.88739 -10.64829 -10.52655 -10.32883 -10.23467 -10.15155 -9.89250 -9.67216 -9.36436 -9.13023 -8.76394 -8.42886 -7.76315 -5.98503 -4.09543 3.33720 3.40591 3.42805 4.44626 4.46635 4.90416 4.93717 5.06993 5.28409 5.37453 5.44445 5.55310 5.62211 5.69813 5.79824 5.90158 5.94792 5.97664 6.04469 6.08905 6.14093 6.23054 6.29934 6.34756 6.39074 6.46891 6.52003 6.61412 6.71048 6.77364 6.87528 6.93254 6.95881 7.06852 7.09491 7.41516 7.58817 7.93117 8.33781 8.82515 9.18292 9.60385 11.08352 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.016878 B = 0.009451 C = 0.007114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.584310 B = 2961.887105 C = 3935.011938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.109 3.891 3 C -0.090 4.090 4 C -0.112 4.112 5 H 0.081 0.919 6 C -0.155 4.155 7 C 0.048 3.952 8 O -0.390 6.390 9 C 0.065 3.935 10 C -0.140 4.140 11 C -0.121 4.121 12 C -0.144 4.144 13 C 0.218 3.782 14 H 0.018 0.982 15 C -0.526 4.526 16 H 0.061 0.939 17 C 0.081 3.919 18 N -0.858 5.858 19 Si 0.886 3.114 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.274 1.274 23 O -0.341 6.341 24 H 0.041 0.959 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.113 0.887 35 H 0.052 0.948 36 H 0.065 0.935 37 H 0.046 0.954 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.813 5.906 -9.108 11.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.068 3.932 3 C -0.127 4.127 4 C -0.130 4.130 5 H 0.099 0.901 6 C -0.192 4.192 7 C -0.030 4.030 8 O -0.310 6.310 9 C -0.010 4.010 10 C -0.178 4.178 11 C -0.158 4.158 12 C -0.182 4.182 13 C 0.163 3.837 14 H 0.036 0.964 15 C -0.563 4.563 16 H 0.080 0.920 17 C -0.125 4.125 18 N -0.494 5.494 19 Si 0.713 3.287 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.199 1.199 23 O -0.260 6.260 24 H 0.060 0.940 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.131 0.869 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.024 6.028 -8.763 10.827 hybrid contribution -0.092 -0.301 0.519 0.607 sum 1.932 5.727 -8.244 10.223 Atomic orbital electron populations 1.22313 0.97101 1.02558 1.00474 1.21159 0.92319 0.91719 0.88028 1.21485 0.93661 0.96009 1.01546 1.22676 0.96155 0.94831 0.99380 0.90057 1.23029 0.98088 0.98338 0.99791 1.23020 0.98017 0.86870 0.95055 1.88893 1.31616 1.28525 1.81953 1.23744 0.81719 1.00465 0.95071 1.22224 1.01085 0.96305 0.98162 1.21638 1.00274 0.95652 0.98266 1.22261 1.00709 0.99521 0.95738 1.19690 0.94360 0.78512 0.91188 0.96414 1.20999 1.32692 1.12900 0.89745 0.92040 1.25004 0.94166 0.94382 0.98922 1.70029 1.33835 1.20396 1.25123 0.86710 0.79032 0.79666 0.83271 1.20418 1.21270 1.19878 1.88363 1.72076 1.27056 1.38533 0.94021 0.91936 0.92061 0.91205 0.91940 0.91031 0.91289 0.90958 0.93229 0.91829 0.86917 0.92974 0.91683 0.93557 0.92596 0.92677 0.92777 0.93150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 7.95 37.15 0.30 -2.77 16 2 C 0.11 2.04 0.79 -90.58 -0.07 1.97 16 3 C -0.09 -1.47 4.00 -26.73 -0.11 -1.58 16 4 C -0.11 -1.81 2.91 -88.61 -0.26 -2.07 16 5 H 0.08 1.32 6.05 -51.93 -0.31 1.00 16 6 C -0.15 -2.08 6.60 -25.20 -0.17 -2.24 16 7 C 0.05 0.69 7.69 37.73 0.29 0.98 16 8 O -0.39 -7.42 11.54 -35.23 -0.41 -7.83 16 9 C 0.07 1.29 5.85 38.21 0.22 1.51 16 10 C -0.14 -2.35 4.67 -26.59 -0.12 -2.48 16 11 C -0.12 -2.10 5.72 -26.55 -0.15 -2.25 16 12 C -0.14 -3.00 5.36 -26.59 -0.14 -3.14 16 13 C 0.22 5.34 2.17 -27.83 -0.06 5.28 16 14 H 0.02 0.48 6.25 -51.93 -0.32 0.16 16 15 C -0.53 -14.37 8.79 -34.44 -0.30 -14.68 16 16 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 17 C 0.08 2.24 5.40 -17.82 -0.10 2.14 16 18 N -0.86 -24.36 12.84 55.43 0.71 -23.65 16 19 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 O -0.34 -7.95 6.62 -35.23 -0.23 -8.18 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.06 1.22 4.98 -51.93 -0.26 0.96 16 26 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.07 1.24 7.97 -51.93 -0.41 0.82 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.07 0.89 7.86 -51.93 -0.41 0.48 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 1.36 7.92 -51.93 -0.41 0.94 16 34 H 0.11 2.53 7.06 -51.92 -0.37 2.16 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 1.11 6.15 -51.93 -0.32 0.79 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.96 6.72 -51.93 -0.35 0.61 16 39 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 308.18 15.07 4.64 4.64 Total: -1.00 -28.51 308.18 -7.91 -36.42 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -6.93 Total: 1.68 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -0.67 Total: -19.33 kcal Atomic # 7 Polarization: -24.36 SS G_CDS: 0.71 Total: -23.65 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.64 Total: -16.01 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.51 -7.91 -36.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689856548.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.682 kcal (2) G-P(sol) polarization free energy of solvation -28.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds