Wall clock time and date at job start Mon Mar 30 2020 06:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52996 * 109.48139 * 2 1 4 4 C 1.53005 * 109.47160 * 179.79479 * 3 2 1 5 5 H 1.08993 * 110.80487 * 50.84027 * 4 3 2 6 6 C 1.54819 * 110.90345 * 174.47024 * 4 3 2 7 7 C 1.54100 * 104.18642 * 139.11428 * 6 4 3 8 8 O 1.43743 * 107.41939 * 1.94937 * 7 6 4 9 9 C 1.44574 * 106.87239 * 333.67464 * 8 7 6 10 10 C 1.53097 * 109.49172 * 239.97573 * 2 1 3 11 11 C 1.53180 * 109.15965 * 297.61824 * 10 2 1 12 12 C 1.53174 * 109.03900 * 303.01782 * 11 10 2 13 13 C 1.53093 * 109.16166 * 56.98218 * 12 11 10 14 14 H 1.08996 * 109.48408 * 62.37792 * 13 12 11 15 15 C 1.50702 * 109.48734 * 182.40583 * 13 12 11 16 16 H 1.07995 * 120.00452 * 359.94487 * 15 13 12 17 17 C 1.37881 * 119.99817 * 179.97438 * 15 13 12 18 18 N 1.31512 * 120.00047 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 119.99907 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46964 * 90.00349 * 19 17 15 21 21 H 1.48500 * 109.46895 * 209.99798 * 19 17 15 22 22 H 1.48494 * 109.47186 * 330.00040 * 19 17 15 23 23 O 1.42904 * 109.41533 * 302.38715 * 13 12 11 24 24 H 1.08998 * 109.47755 * 64.03878 * 1 2 3 25 25 H 1.09005 * 109.47285 * 184.03181 * 1 2 3 26 26 H 1.08997 * 109.47614 * 304.03340 * 1 2 3 27 27 H 1.09002 * 109.46903 * 59.79707 * 3 2 1 28 28 H 1.08998 * 109.47281 * 299.79326 * 3 2 1 29 29 H 1.08998 * 110.48804 * 20.43718 * 6 4 3 30 30 H 1.09001 * 110.59385 * 257.84280 * 6 4 3 31 31 H 1.08994 * 109.88148 * 121.44832 * 7 6 4 32 32 H 1.08997 * 109.87802 * 242.45572 * 7 6 4 33 33 H 1.08999 * 110.50138 * 281.37512 * 9 8 7 34 34 H 1.09008 * 110.77293 * 158.50928 * 9 8 7 35 35 H 1.08999 * 109.52232 * 57.52362 * 10 2 1 36 36 H 1.08999 * 109.52267 * 177.71525 * 10 2 1 37 37 H 1.09003 * 109.54280 * 183.14998 * 11 10 2 38 38 H 1.09003 * 109.61748 * 62.93128 * 11 10 2 39 39 H 1.08996 * 109.52387 * 297.07539 * 12 11 10 40 40 H 1.09001 * 109.57937 * 176.91799 * 12 11 10 41 41 H 0.97001 * 120.00226 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 3.5702 1.4421 0.0052 5 1 3.9599 0.7977 -0.7828 6 6 4.1233 2.8814 -0.1341 7 6 5.3099 2.9267 0.8481 8 8 5.4316 1.6208 1.4364 9 6 4.1193 1.0159 1.3905 10 6 2.0407 -0.7221 -1.2496 11 6 1.5762 -2.1813 -1.2122 12 6 2.0769 -2.8321 0.0808 13 6 1.5647 -2.0285 1.2790 14 1 0.4752 -2.0552 1.2957 15 6 2.1017 -2.6280 2.5531 16 1 2.7433 -3.4958 2.5131 17 6 1.7734 -2.0689 3.7699 18 7 0.9921 -1.0122 3.8187 19 14 2.4385 -2.8124 5.3493 20 1 3.7369 -2.1760 5.6876 21 1 1.4711 -2.5797 6.4516 22 1 2.6362 -4.2725 5.1641 23 8 2.0066 -0.6742 1.1664 24 1 -0.3634 0.4498 -0.9239 25 1 -0.3634 -1.0252 0.0723 26 1 -0.3634 0.5751 0.8516 27 1 1.6739 1.9573 0.8882 28 1 1.6800 1.9552 -0.8918 29 1 3.3648 3.6108 0.1501 30 1 4.4643 3.0642 -1.1531 31 1 6.2251 3.1785 0.3124 32 1 5.1198 3.6669 1.6252 33 1 3.4902 1.4076 2.1898 34 1 4.1914 -0.0697 1.4573 35 1 1.6423 -0.2357 -2.1399 36 1 3.1300 -0.6871 -1.2708 37 1 1.9831 -2.7157 -2.0707 38 1 0.4872 -2.2195 -1.2417 39 1 3.1668 -2.8398 0.0865 40 1 1.7052 -3.8550 0.1427 41 1 0.7608 -0.6190 4.6748 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689856548.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:37 Heat of formation + Delta-G solvation = -128.826256 kcal Electronic energy + Delta-G solvation = -20839.707022 eV Core-core repulsion = 17911.069068 eV Total energy + Delta-G solvation = -2928.637954 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.94243 -39.70386 -35.71017 -34.33712 -33.92363 -32.44465 -30.22962 -29.38605 -27.18098 -26.60444 -23.83505 -23.60285 -22.21322 -21.31841 -19.59325 -18.59488 -17.47115 -16.89022 -16.67052 -16.31775 -15.96230 -15.80582 -15.38896 -14.91697 -14.64787 -14.26393 -14.08733 -13.58355 -13.44691 -13.14232 -12.95755 -12.81163 -12.68712 -12.65138 -12.37054 -12.29836 -12.07063 -11.90620 -11.76989 -11.57472 -11.49968 -11.14430 -10.95168 -10.73896 -10.54852 -10.31494 -9.48716 -8.09683 -6.26697 1.38604 1.41482 1.49342 2.42044 3.05468 3.17005 3.66473 3.67763 3.85186 4.04181 4.10960 4.22037 4.23053 4.29362 4.44948 4.51838 4.54389 4.60792 4.74552 4.82169 4.88145 4.88608 4.90246 4.96483 5.00399 5.07513 5.11350 5.16896 5.21575 5.25393 5.31971 5.38714 5.40953 5.56712 5.57397 5.68997 5.89181 6.04849 6.32821 6.75321 7.37292 7.49797 8.96542 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.016878 B = 0.009451 C = 0.007114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.584310 B = 2961.887105 C = 3935.011938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.093 3.907 3 C -0.083 4.083 4 C -0.104 4.104 5 H 0.088 0.912 6 C -0.143 4.143 7 C 0.036 3.964 8 O -0.416 6.416 9 C 0.072 3.928 10 C -0.133 4.133 11 C -0.116 4.116 12 C -0.139 4.139 13 C 0.220 3.780 14 H -0.011 1.011 15 C -0.550 4.550 16 H 0.055 0.945 17 C 0.035 3.965 18 N -0.886 5.886 19 Si 0.944 3.056 20 H -0.281 1.281 21 H -0.281 1.281 22 H -0.266 1.266 23 O -0.364 6.364 24 H 0.079 0.921 25 H 0.043 0.957 26 H 0.035 0.965 27 H 0.049 0.951 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.033 0.967 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.045 0.955 40 H 0.052 0.948 41 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.316 7.045 -11.489 13.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.053 3.947 3 C -0.121 4.121 4 C -0.123 4.123 5 H 0.106 0.894 6 C -0.181 4.181 7 C -0.040 4.040 8 O -0.336 6.336 9 C -0.004 4.004 10 C -0.171 4.171 11 C -0.153 4.153 12 C -0.177 4.177 13 C 0.164 3.836 14 H 0.006 0.994 15 C -0.587 4.587 16 H 0.073 0.927 17 C -0.168 4.168 18 N -0.523 5.523 19 Si 0.770 3.230 20 H -0.207 1.207 21 H -0.206 1.206 22 H -0.190 1.190 23 O -0.283 6.283 24 H 0.098 0.902 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.120 0.880 29 H 0.102 0.898 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.527 7.166 -11.153 13.495 hybrid contribution -0.231 -0.623 1.253 1.419 sum 2.297 6.542 -9.899 12.086 Atomic orbital electron populations 1.22244 0.96959 1.01269 1.01295 1.21569 0.92631 0.92995 0.87552 1.21477 0.93773 0.94411 1.02393 1.22602 0.95886 0.96960 0.96843 0.89417 1.23006 0.97606 0.96263 1.01203 1.23348 1.00070 0.84818 0.95788 1.88855 1.31076 1.30842 1.82789 1.23420 0.82109 0.98168 0.96749 1.22174 1.01087 0.95682 0.98140 1.21610 1.00502 0.96225 0.96982 1.22127 0.99976 0.99240 0.96389 1.19434 0.92473 0.79936 0.91796 0.99381 1.21407 1.32462 1.13157 0.91681 0.92689 1.25701 0.94476 0.94823 1.01822 1.70142 1.35065 1.21553 1.25576 0.85789 0.78183 0.79210 0.79831 1.20697 1.20597 1.19007 1.88283 1.72331 1.26443 1.41288 0.90218 0.93810 0.94550 0.93245 0.88026 0.89805 0.88127 0.88342 0.92648 0.94829 0.90707 0.89364 0.91774 0.90705 0.92309 0.93573 0.92895 0.93321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.77 7.95 71.98 0.57 -5.20 16 2 C 0.09 3.39 0.79 -10.77 -0.01 3.38 16 3 C -0.08 -2.58 4.00 30.59 0.12 -2.46 16 4 C -0.10 -3.19 2.91 -9.49 -0.03 -3.22 16 5 H 0.09 2.60 6.05 -2.39 -0.01 2.59 16 6 C -0.14 -3.34 6.60 31.59 0.21 -3.14 16 7 C 0.04 0.97 7.69 72.35 0.56 1.53 16 8 O -0.42 -15.80 11.54 -148.98 -1.72 -17.52 16 9 C 0.07 2.89 5.85 72.66 0.43 3.32 16 10 C -0.13 -4.09 4.67 30.69 0.14 -3.95 16 11 C -0.12 -3.78 5.72 30.71 0.18 -3.60 16 12 C -0.14 -5.82 5.36 30.68 0.16 -5.66 16 13 C 0.22 11.16 2.17 29.88 0.06 11.23 16 14 H -0.01 -0.63 6.25 -2.39 -0.01 -0.64 16 15 C -0.55 -31.28 8.79 25.60 0.23 -31.05 16 16 H 0.05 3.09 7.74 -2.91 -0.02 3.07 16 17 C 0.03 1.99 5.40 84.66 0.46 2.44 16 18 N -0.89 -52.47 12.84 21.45 0.28 -52.19 16 19 Si 0.94 45.01 29.54 68.60 2.03 47.03 16 20 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 23 O -0.36 -17.50 6.62 -148.98 -0.99 -18.49 16 24 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 25 H 0.04 1.72 4.98 -2.38 -0.01 1.71 16 26 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.05 1.73 7.97 -2.39 -0.02 1.71 16 28 H 0.10 2.38 8.14 -2.39 -0.02 2.37 16 29 H 0.08 1.78 7.86 -2.39 -0.02 1.76 16 30 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.03 1.52 7.92 -2.39 -0.02 1.50 16 34 H 0.07 3.56 7.06 -2.38 -0.02 3.54 16 35 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.06 2.00 6.15 -2.39 -0.01 1.99 16 37 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.06 1.89 6.72 -2.39 -0.02 1.88 16 39 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -65.29 308.18 3.66 -61.63 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.99 Total: 15.92 kcal Atomic # 6 Polarization: -39.45 SS G_CDS: 3.08 Total: -36.38 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: 0.28 Total: -52.19 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -2.71 Total: -36.01 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -65.29 3.66 -61.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689856548.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.200 kcal (2) G-P(sol) polarization free energy of solvation -65.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds