Wall clock time and date at job start Mon Mar 30 2020 07:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46930 * 2 1 4 4 C 1.52996 * 109.47034 * 119.99579 * 2 1 3 5 5 H 1.08997 * 110.53406 * 302.81822 * 4 2 1 6 6 C 1.55215 * 110.59300 * 179.97438 * 4 2 1 7 7 C 1.53797 * 101.83949 * 205.11609 * 6 4 2 8 8 C 1.53906 * 110.59980 * 140.27430 * 7 6 4 9 9 C 1.55498 * 100.79515 * 156.49378 * 8 7 6 10 10 C 1.54470 * 102.36422 * 326.95118 * 9 8 7 11 11 C 1.53001 * 109.83707 * 261.84806 * 10 9 8 12 12 C 1.50700 * 109.91821 * 140.89699 * 10 9 8 13 13 H 1.08003 * 119.99638 * 0.40541 * 12 10 9 14 14 C 1.37878 * 120.00257 * 180.40102 * 12 10 9 15 15 N 1.31512 * 119.99508 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 119.99841 * 180.02562 * 14 12 10 17 17 H 1.48491 * 109.47645 * 60.00233 * 16 14 12 18 18 H 1.48504 * 109.46804 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47137 * 299.99574 * 16 14 12 20 20 O 1.42439 * 111.56284 * 258.68186 * 7 6 4 21 21 C 1.53086 * 105.21256 * 20.34295 * 7 6 4 22 22 O 1.44039 * 106.91356 * 2.20140 * 21 7 6 23 23 H 1.09005 * 109.47416 * 300.00049 * 1 2 3 24 24 H 1.09007 * 109.46924 * 60.00085 * 1 2 3 25 25 H 1.09004 * 109.47153 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47397 * 239.99972 * 2 1 3 27 27 H 1.08998 * 109.46691 * 299.99879 * 3 2 1 28 28 H 1.08995 * 109.47103 * 59.99792 * 3 2 1 29 29 H 1.08999 * 109.46582 * 179.97438 * 3 2 1 30 30 H 1.08999 * 110.95560 * 86.98388 * 6 4 2 31 31 H 1.08998 * 110.99321 * 323.26777 * 6 4 2 32 32 H 1.09000 * 111.15624 * 274.37555 * 8 7 6 33 33 H 1.08998 * 111.15027 * 38.61252 * 8 7 6 34 34 H 1.09003 * 110.82428 * 208.73183 * 9 8 7 35 35 H 1.08997 * 111.00178 * 85.25395 * 9 8 7 36 36 H 1.09005 * 109.46704 * 179.55501 * 11 10 9 37 37 H 1.09000 * 109.46891 * 299.54472 * 11 10 9 38 38 H 1.08996 * 109.47189 * 59.55131 * 11 10 9 39 39 H 0.97001 * 119.99121 * 180.02562 * 15 14 12 40 40 H 1.08992 * 109.97395 * 121.56697 * 21 7 6 41 41 H 1.09001 * 109.97039 * 242.84079 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6458 -0.2506 2.1500 6 6 3.5918 -0.7369 1.2753 7 6 3.8803 -1.9746 2.1415 8 6 5.0775 -2.7617 1.5795 9 6 5.5540 -3.5158 2.8532 10 6 5.2269 -2.5073 3.9765 11 6 6.4849 -1.7209 4.3507 12 6 4.7022 -3.2378 5.1857 13 1 4.6130 -4.3140 5.1697 14 6 4.3361 -2.5323 6.3123 15 7 4.4444 -1.2218 6.3315 16 14 3.6864 -3.4381 7.8113 17 1 4.7177 -4.3872 8.3018 18 1 3.3656 -2.4589 8.8806 19 1 2.4587 -4.1879 7.4429 20 8 4.2236 -1.6115 3.4754 21 6 2.5993 -2.8109 2.0864 22 8 1.6861 -2.1215 1.2115 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 3.1300 1.4425 0.0005 30 1 3.9830 0.1663 1.7435 31 1 3.9980 -0.8605 0.2714 32 1 4.7606 -3.4597 0.8046 33 1 5.8509 -2.0893 1.2082 34 1 6.6251 -3.7128 2.8089 35 1 4.9966 -4.4425 2.9899 36 1 6.2457 -1.0058 5.1379 37 1 7.2515 -2.4094 4.7061 38 1 6.8537 -1.1872 3.4748 39 1 4.1872 -0.7256 7.1243 40 1 2.8185 -3.8020 1.6895 41 1 2.1671 -2.8960 3.0834 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691327742.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:12 Heat of formation + Delta-G solvation = -106.474546 kcal Electronic energy + Delta-G solvation = -20528.227248 eV Core-core repulsion = 17600.558537 eV Total energy + Delta-G solvation = -2927.668711 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.89309 -37.52153 -34.79204 -33.05338 -31.18144 -30.84255 -28.61122 -26.97160 -26.43029 -25.30545 -23.26103 -22.23064 -20.03476 -19.49488 -19.20699 -16.49059 -16.31709 -15.47947 -14.81260 -14.63457 -14.13943 -13.96134 -13.46242 -13.23239 -13.06406 -12.58036 -12.28310 -12.15111 -12.05468 -11.89473 -11.59845 -11.52077 -11.07174 -10.92929 -10.88472 -10.72997 -10.61945 -10.57054 -10.36779 -10.33092 -10.02304 -9.74908 -9.48490 -9.11092 -9.04258 -8.47632 -7.90655 -5.95624 -4.12198 3.31270 3.36380 3.38714 4.26540 4.41856 4.76901 4.88482 5.06212 5.28709 5.36222 5.38959 5.44407 5.55628 5.58692 5.70734 5.73729 5.85119 5.94156 6.00618 6.02821 6.13283 6.17464 6.27181 6.33431 6.37183 6.39742 6.47514 6.51709 6.56656 6.63872 6.70565 6.83106 6.91211 7.10231 7.32284 7.49371 7.78431 8.08221 8.35414 8.62900 9.03905 9.59231 11.06132 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.024750 B = 0.006822 C = 0.006285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.027281 B = 4103.480817 C = 4453.628806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 C -0.146 4.146 4 C 0.084 3.916 5 H 0.070 0.930 6 C -0.142 4.142 7 C 0.077 3.923 8 C -0.143 4.143 9 C -0.142 4.142 10 C 0.227 3.773 11 C -0.138 4.138 12 C -0.535 4.535 13 H 0.058 0.942 14 C 0.082 3.918 15 N -0.860 5.860 16 Si 0.887 3.113 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.276 1.276 20 O -0.333 6.333 21 C 0.041 3.959 22 O -0.383 6.383 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.036 0.964 38 H 0.011 0.989 39 H 0.260 0.740 40 H 0.077 0.923 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.299 2.096 -11.028 11.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 C -0.203 4.203 4 C 0.026 3.974 5 H 0.088 0.912 6 C -0.180 4.180 7 C 0.035 3.965 8 C -0.180 4.180 9 C -0.180 4.180 10 C 0.190 3.810 11 C -0.196 4.196 12 C -0.572 4.572 13 H 0.076 0.924 14 C -0.123 4.123 15 N -0.496 5.496 16 Si 0.714 3.286 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.202 1.202 20 O -0.252 6.252 21 C -0.036 4.036 22 O -0.302 6.302 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.091 0.909 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.108 0.892 37 H 0.055 0.945 38 H 0.030 0.970 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.573 2.342 -10.904 11.445 hybrid contribution -0.086 -0.660 0.934 1.147 sum -2.659 1.682 -9.969 10.454 Atomic orbital electron populations 1.21779 0.95022 1.02178 1.01104 1.21115 0.96201 0.95761 0.97603 1.21815 1.01434 0.95326 1.01753 1.23145 0.93704 0.83139 0.97364 0.91243 1.23121 0.95931 0.99477 0.99428 1.22502 0.93842 0.92820 0.87300 1.23123 0.97727 0.98982 0.98197 1.23282 1.00288 0.99773 0.94631 1.19757 0.85844 0.85161 0.90227 1.21964 0.96353 1.00820 1.00434 1.21212 1.45768 0.92790 0.97445 0.92417 1.24987 0.94450 0.94716 0.98192 1.69942 1.45569 1.05604 1.28512 0.86769 0.79581 0.79643 0.82605 1.20211 1.21219 1.20195 1.88681 1.59405 1.54739 1.22403 1.23569 0.89700 0.95440 0.94872 1.88809 1.55736 1.18729 1.66975 0.92830 0.93164 0.92079 0.90853 0.92611 0.92428 0.92226 0.89620 0.90755 0.91578 0.91416 0.92121 0.91706 0.89202 0.94538 0.96994 0.93021 0.90471 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.11 37.16 0.34 -1.44 16 2 C -0.09 -1.17 2.72 -90.62 -0.25 -1.42 16 3 C -0.15 -1.68 8.97 37.16 0.33 -1.35 16 4 C 0.08 1.41 2.85 -25.56 -0.07 1.34 16 5 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 6 C -0.14 -2.44 4.75 -25.14 -0.12 -2.56 16 7 C 0.08 1.55 1.08 -89.69 -0.10 1.45 16 8 C -0.14 -2.58 5.80 -24.93 -0.14 -2.72 16 9 C -0.14 -2.91 6.00 -24.63 -0.15 -3.06 16 10 C 0.23 5.58 0.83 -91.00 -0.08 5.50 16 11 C -0.14 -3.33 8.51 37.16 0.32 -3.01 16 12 C -0.53 -14.49 8.22 -34.44 -0.28 -14.77 16 13 H 0.06 1.54 7.52 -52.48 -0.39 1.15 16 14 C 0.08 2.25 5.26 -17.82 -0.09 2.16 16 15 N -0.86 -24.48 10.93 55.43 0.61 -23.88 16 16 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 O -0.33 -8.33 9.53 -35.23 -0.34 -8.66 16 21 C 0.04 0.81 7.11 37.20 0.26 1.08 16 22 O -0.38 -7.18 10.89 -35.23 -0.38 -7.57 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.81 7.90 -51.93 -0.41 0.40 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.68 7.22 -51.93 -0.37 0.31 16 30 H 0.09 1.52 8.01 -51.93 -0.42 1.11 16 31 H 0.07 1.13 7.79 -51.93 -0.40 0.72 16 32 H 0.07 1.05 7.70 -51.93 -0.40 0.65 16 33 H 0.07 1.15 8.07 -51.93 -0.42 0.74 16 34 H 0.06 1.15 7.82 -51.93 -0.41 0.74 16 35 H 0.06 1.32 7.66 -51.93 -0.40 0.92 16 36 H 0.09 2.41 6.05 -51.93 -0.31 2.10 16 37 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 39 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.08 1.41 7.46 -51.93 -0.39 1.02 16 41 H 0.07 1.65 8.01 -51.93 -0.42 1.24 16 LS Contribution 318.06 15.07 4.79 4.79 Total: -1.00 -28.85 318.06 -7.63 -36.48 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -7.26 Total: 1.51 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: -0.03 Total: -18.80 kcal Atomic # 7 Polarization: -24.48 SS G_CDS: 0.61 Total: -23.88 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.72 Total: -16.23 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.85 -7.63 -36.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691327742.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.995 kcal (2) G-P(sol) polarization free energy of solvation -28.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds