Wall clock time and date at job start Mon Mar 30 2020 06:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47319 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47000 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.70411 * 60.58631 * 13 12 11 15 15 O 1.20833 * 120.00107 * 24.99519 * 14 13 12 16 16 O 1.34236 * 120.00031 * 204.99598 * 14 13 12 17 17 C 1.53503 * 109.70518 * 181.20689 * 13 12 11 18 18 C 1.53266 * 108.14704 * 57.28073 * 17 13 12 19 19 C 1.50437 * 109.43853 * 46.83638 * 18 17 13 20 20 C 1.30687 * 122.49779 * 342.51651 * 19 18 17 21 21 O 1.35136 * 123.33890 * 0.41694 * 20 19 18 22 22 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 24 24 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 25 25 H 1.09000 * 109.46887 * 300.00372 * 10 9 7 26 26 H 1.08998 * 109.46846 * 59.99549 * 10 9 7 27 27 H 1.09009 * 109.47216 * 299.99697 * 11 10 9 28 28 H 1.08998 * 109.47141 * 59.99668 * 11 10 9 29 29 H 1.08995 * 109.46638 * 299.99903 * 12 11 10 30 30 H 1.08998 * 109.46846 * 59.99450 * 12 11 10 31 31 H 0.96697 * 116.99932 * 179.97438 * 16 14 13 32 32 H 1.08997 * 109.72862 * 176.95948 * 17 13 12 33 33 H 1.09000 * 109.72960 * 297.62535 * 17 13 12 34 34 H 1.09003 * 109.47101 * 286.84403 * 18 17 13 35 35 H 1.09001 * 109.48658 * 166.83550 * 18 17 13 36 36 H 1.08004 * 118.75308 * 162.50219 * 19 18 17 37 37 H 1.07996 * 118.32931 * 180.43654 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4805 -4.9870 0.0012 12 6 2.4748 -6.1500 0.0031 13 6 1.7098 -7.4750 0.0031 14 6 0.8538 -7.5674 -1.2337 15 8 1.1552 -6.9456 -2.2249 16 8 -0.2436 -8.3406 -1.2342 17 6 2.7022 -8.6456 0.0355 18 6 3.5875 -8.4867 1.2765 19 6 2.7253 -8.1799 2.4705 20 6 1.4955 -7.7525 2.3573 21 8 0.8842 -7.5554 1.1683 22 1 -0.4850 -0.8401 -0.0004 23 1 0.6241 -2.5566 0.8903 24 1 0.6248 -2.5571 -0.8896 25 1 2.8727 -3.6046 -0.8877 26 1 2.8714 -3.6038 0.8922 27 1 0.8528 -5.0447 0.8906 28 1 0.8548 -5.0449 -0.8894 29 1 3.1027 -6.0925 -0.8859 30 1 3.1001 -6.0918 0.8940 31 1 -0.7611 -8.3677 -2.0505 32 1 2.1577 -9.5882 0.0899 33 1 3.3206 -8.6287 -0.8620 34 1 4.2925 -7.6707 1.1179 35 1 4.1362 -9.4120 1.4526 36 1 3.1383 -8.3181 3.4589 37 1 0.9395 -7.5462 3.2599 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691701717.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:50 Heat of formation + Delta-G solvation = -163.163780 kcal Electronic energy + Delta-G solvation = -19216.015743 eV Core-core repulsion = 16150.055708 eV Total energy + Delta-G solvation = -3065.960035 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.135 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.38424 -40.56034 -37.56388 -36.89612 -35.31127 -34.82238 -33.17626 -30.52111 -27.72277 -26.28217 -24.97328 -24.11294 -22.51717 -22.03342 -19.86963 -18.97417 -18.64388 -18.53117 -17.64423 -16.88191 -16.18023 -16.13992 -15.65069 -15.60949 -15.33090 -15.00158 -14.41218 -14.26287 -13.95503 -13.92445 -13.69275 -12.92619 -12.85985 -12.69259 -12.61166 -12.48024 -12.18918 -11.97127 -11.86234 -11.78259 -11.55401 -11.45832 -11.32207 -10.63727 -10.56892 -9.39068 -8.72368 -6.42767 0.80620 1.38545 1.50907 1.60586 1.78405 1.80036 2.37886 2.56106 3.13278 3.24206 3.46358 3.86364 3.95485 4.02238 4.08649 4.20895 4.34546 4.43775 4.52993 4.59581 4.67625 4.73191 4.77528 4.90664 4.98945 5.02985 5.07363 5.13555 5.30822 5.37487 5.44663 5.50781 5.61071 5.97387 6.15067 6.49550 6.53494 6.81494 7.40854 8.68004 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.028195 B = 0.004644 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.845775 B = 6027.863398 C = 6449.927155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.043 4.043 3 Si 1.122 2.878 4 H -0.282 1.282 5 H -0.265 1.265 6 H -0.268 1.268 7 C -0.621 4.621 8 H 0.053 0.947 9 C 0.007 3.993 10 C -0.088 4.088 11 C -0.109 4.109 12 C -0.120 4.120 13 C 0.127 3.873 14 C 0.501 3.499 15 O -0.525 6.525 16 O -0.499 6.499 17 C -0.140 4.140 18 C -0.082 4.082 19 C -0.271 4.271 20 C 0.030 3.970 21 O -0.318 6.318 22 H 0.252 0.748 23 H -0.013 1.013 24 H -0.021 1.021 25 H 0.048 0.952 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.039 0.961 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.428 0.572 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.106 0.894 36 H 0.144 0.856 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.280 -21.934 2.924 23.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.239 4.239 3 Si 0.942 3.058 4 H -0.207 1.207 5 H -0.190 1.190 6 H -0.194 1.194 7 C -0.659 4.659 8 H 0.071 0.929 9 C -0.030 4.030 10 C -0.125 4.125 11 C -0.146 4.146 12 C -0.157 4.157 13 C 0.087 3.913 14 C 0.343 3.657 15 O -0.414 6.414 16 O -0.312 6.312 17 C -0.178 4.178 18 C -0.119 4.119 19 C -0.290 4.290 20 C -0.032 4.032 21 O -0.233 6.233 22 H 0.062 0.938 23 H 0.005 0.995 24 H -0.003 1.003 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.106 0.894 30 H 0.118 0.882 31 H 0.290 0.710 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.100 0.900 35 H 0.124 0.876 36 H 0.161 0.839 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 6.181 -20.129 2.967 21.265 hybrid contribution -0.571 -1.552 -0.673 1.786 sum 5.610 -21.682 2.294 22.513 Atomic orbital electron populations 1.70921 1.08048 1.29654 1.48903 1.27605 0.96613 1.07170 0.92538 0.82903 0.74099 0.70665 0.78181 1.20746 1.19001 1.19354 1.22535 0.94806 0.93425 1.55124 0.92851 1.19193 0.95203 0.95024 0.93581 1.21285 0.97657 0.92956 1.00628 1.21491 0.98080 0.94354 1.00710 1.22055 0.98022 0.90715 1.04928 1.21661 0.89515 0.98652 0.81426 1.22934 0.79379 0.74618 0.88782 1.90782 1.71010 1.43638 1.36004 1.84558 1.36949 1.63142 1.46597 1.22284 0.97589 0.95982 1.01898 1.20478 0.96916 1.03925 0.90557 1.22796 0.96346 1.08292 1.01548 1.22449 0.95818 0.97888 0.87013 1.86026 1.35961 1.87495 1.13830 0.93837 0.99500 1.00274 0.93333 0.92385 0.92611 0.94169 0.89358 0.88174 0.70996 0.89028 0.88440 0.90021 0.87602 0.83862 0.80650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.08 13.65 21.45 0.29 -60.79 16 2 C -0.04 -2.59 5.46 84.65 0.46 -2.13 16 3 Si 1.12 51.85 29.90 68.60 2.05 53.90 16 4 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 5 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.62 -37.59 9.11 25.60 0.23 -37.36 16 8 H 0.05 3.10 7.74 -2.91 -0.02 3.08 16 9 C 0.01 0.39 4.28 29.85 0.13 0.52 16 10 C -0.09 -3.91 5.15 30.59 0.16 -3.75 16 11 C -0.11 -4.11 4.80 30.59 0.15 -3.97 16 12 C -0.12 -3.43 3.52 30.59 0.11 -3.32 16 13 C 0.13 3.20 0.75 -11.37 -0.01 3.19 16 14 C 0.50 13.82 6.45 71.23 0.46 14.28 16 15 O -0.52 -17.56 15.84 21.94 0.35 -17.21 16 16 O -0.50 -10.92 13.18 -46.57 -0.61 -11.54 16 17 C -0.14 -2.50 5.11 30.85 0.16 -2.35 16 18 C -0.08 -1.23 5.57 29.85 0.17 -1.06 16 19 C -0.27 -4.54 9.46 25.88 0.24 -4.29 16 20 C 0.03 0.61 10.48 68.10 0.71 1.33 16 21 O -0.32 -8.39 8.92 -70.99 -0.63 -9.02 16 22 H 0.25 16.79 7.22 -92.70 -0.67 16.12 16 23 H -0.01 -0.79 8.01 -2.39 -0.02 -0.81 16 24 H -0.02 -1.28 8.01 -2.39 -0.02 -1.30 16 25 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.06 2.14 7.69 -2.38 -0.02 2.12 16 28 H 0.04 1.66 6.53 -2.39 -0.02 1.64 16 29 H 0.09 2.51 7.86 -2.39 -0.02 2.49 16 30 H 0.10 2.56 5.97 -2.39 -0.01 2.55 16 31 H 0.43 5.38 9.10 -74.06 -0.67 4.71 16 32 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.08 1.22 7.06 -2.39 -0.02 1.21 16 35 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 37 H 0.18 2.89 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -76.87 304.99 4.90 -71.97 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 0.49 Total: 11.60 kcal Atomic # 6 Polarization: -41.88 SS G_CDS: 2.97 Total: -38.91 kcal Atomic # 7 Polarization: -61.08 SS G_CDS: 0.29 Total: -60.79 kcal Atomic # 8 Polarization: -36.87 SS G_CDS: -0.90 Total: -37.77 kcal Atomic # 14 Polarization: 51.85 SS G_CDS: 2.05 Total: 53.90 kcal Total: -76.87 4.90 -71.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691701717.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.198 kcal (2) G-P(sol) polarization free energy of solvation -76.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds