Wall clock time and date at job start Mon Mar 30 2020 06:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99864 * 2 1 4 4 O 1.20826 * 119.99918 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00039 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.70526 * 155.00189 * 5 3 2 7 7 C 1.52994 * 109.46838 * 305.57463 * 6 5 3 8 8 C 1.52996 * 109.47119 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.47159 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72211 * 9 8 7 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 8 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 8 14 14 H 1.48504 * 109.47196 * 60.00645 * 13 11 9 15 15 H 1.48504 * 109.46887 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47679 * 300.00280 * 13 11 9 17 17 C 1.53504 * 109.70504 * 275.57926 * 5 3 2 18 18 C 1.53257 * 108.16040 * 182.13050 * 17 5 3 19 19 C 1.50451 * 109.43627 * 313.17814 * 18 17 5 20 20 C 1.30680 * 122.49614 * 17.45718 * 19 18 17 21 21 O 1.35128 * 123.34550 * 359.61402 * 20 19 18 22 22 H 1.08993 * 109.47603 * 299.99865 * 1 2 3 23 23 H 1.09003 * 109.46887 * 60.00362 * 1 2 3 24 24 H 1.09006 * 109.46740 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46943 * 185.58337 * 6 5 3 26 26 H 1.08994 * 109.47116 * 65.57948 * 6 5 3 27 27 H 1.09004 * 109.46806 * 60.00265 * 7 6 5 28 28 H 1.09000 * 109.47828 * 300.00570 * 7 6 5 29 29 H 1.09004 * 109.47066 * 60.00422 * 8 7 6 30 30 H 1.08994 * 109.47405 * 300.00252 * 8 7 6 31 31 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 32 32 H 1.09000 * 109.72635 * 301.79787 * 17 5 3 33 33 H 1.09003 * 109.72532 * 62.42473 * 17 5 3 34 34 H 1.09000 * 109.47558 * 73.16463 * 18 17 5 35 35 H 1.08993 * 109.47804 * 193.17984 * 18 17 5 36 36 H 1.08010 * 118.74623 * 197.48052 * 19 18 17 37 37 H 1.08003 * 118.32593 * 179.56843 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2750 -0.0006 6 6 4.0128 2.6058 -0.6092 7 6 3.3848 2.7692 -1.9947 8 6 3.8318 4.0997 -2.6036 9 6 3.2127 4.2609 -3.9681 10 1 2.5647 3.4915 -4.3615 11 6 3.4684 5.3935 -4.7117 12 7 4.2570 6.3305 -4.2325 13 14 2.6948 5.5968 -6.3997 14 1 1.2154 5.5782 -6.2718 15 1 3.1249 6.8904 -6.9888 16 1 3.1295 4.4834 -7.2810 17 6 4.0911 1.1615 1.4375 18 6 5.6170 1.2994 1.4014 19 6 6.1731 0.4243 0.3113 20 6 5.4320 -0.0503 -0.6547 21 8 4.1067 0.1910 -0.7614 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 5.0990 2.6179 -0.6990 26 1 3.6923 3.4252 0.0340 27 1 2.2985 2.7570 -1.9049 28 1 3.7053 1.9497 -2.6380 29 1 4.9181 4.1114 -2.6935 30 1 3.5116 4.9194 -1.9606 31 1 4.4372 7.1272 -4.7559 32 1 3.6641 1.9566 2.0488 33 1 3.8185 0.1913 1.8531 34 1 5.8834 2.3380 1.2052 35 1 6.0324 0.9928 2.3612 36 1 7.2248 0.1788 0.3280 37 1 5.9029 -0.6664 -1.4066 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691808587.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:11 Heat of formation + Delta-G solvation = -120.974034 kcal Electronic energy + Delta-G solvation = -19542.406680 eV Core-core repulsion = 16478.276130 eV Total energy + Delta-G solvation = -3064.130551 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.135 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.19589 -39.54525 -36.58381 -34.47402 -33.94295 -32.61891 -31.04777 -27.97902 -27.56135 -25.36960 -23.78607 -23.09911 -21.14657 -20.18079 -18.58536 -17.50164 -16.94103 -16.62556 -16.17447 -15.92703 -15.04589 -14.63512 -14.45488 -14.17616 -14.00659 -13.25298 -13.04675 -12.88970 -12.78510 -12.23372 -12.10874 -11.78949 -11.42211 -11.25134 -11.00007 -10.79901 -10.76346 -10.66959 -10.60495 -10.38831 -10.05341 -9.53394 -9.22438 -8.98964 -8.34936 -8.27130 -5.93140 -3.94549 2.07640 2.39627 2.69097 3.37930 3.41337 3.44639 3.47386 4.44017 4.53139 4.60649 4.84950 5.03792 5.11197 5.11408 5.20976 5.30069 5.42468 5.49685 5.52824 5.60283 5.73482 5.87327 5.96810 6.01879 6.26623 6.35528 6.42555 6.54946 6.80206 6.94493 7.22511 7.55220 7.74850 7.83245 7.91781 8.07724 8.51526 9.11848 9.68603 11.18400 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.021037 B = 0.006039 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.683383 B = 4635.281955 C = 5394.692122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.349 6.349 3 C 0.484 3.516 4 O -0.477 6.477 5 C 0.131 3.869 6 C -0.126 4.126 7 C -0.115 4.115 8 C 0.026 3.974 9 C -0.517 4.517 10 H 0.053 0.947 11 C 0.056 3.944 12 N -0.897 5.897 13 Si 0.891 3.109 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C -0.145 4.145 18 C -0.077 4.077 19 C -0.285 4.285 20 C 0.064 3.936 21 O -0.300 6.300 22 H 0.061 0.939 23 H 0.066 0.934 24 H 0.100 0.900 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.014 0.986 30 H 0.016 0.984 31 H 0.260 0.740 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.122 0.878 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.206 -14.106 12.466 18.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.265 6.265 3 C 0.325 3.675 4 O -0.363 6.363 5 C 0.092 3.908 6 C -0.163 4.163 7 C -0.152 4.152 8 C -0.011 4.011 9 C -0.556 4.556 10 H 0.071 0.929 11 C -0.145 4.145 12 N -0.537 5.537 13 Si 0.719 3.281 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.183 4.183 18 C -0.114 4.114 19 C -0.305 4.305 20 C 0.001 3.999 21 O -0.213 6.213 22 H 0.080 0.920 23 H 0.084 0.916 24 H 0.118 0.882 25 H 0.101 0.899 26 H 0.101 0.899 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.032 0.968 30 H 0.034 0.966 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.140 0.860 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.525 -13.729 12.306 18.445 hybrid contribution -0.391 0.373 -0.859 1.015 sum -0.916 -13.356 11.447 17.614 Atomic orbital electron populations 1.23296 0.76638 1.03550 1.02713 1.86578 1.23082 1.33148 1.83701 1.22991 0.90269 0.81728 0.72546 1.90741 1.65535 1.36159 1.43848 1.21834 0.86105 0.89595 0.93273 1.22189 1.01890 0.92388 0.99872 1.21729 0.99888 1.01176 0.92416 1.19035 0.96306 0.90605 0.95163 1.21228 1.28754 1.03861 1.01711 0.92880 1.25015 0.95353 0.95959 0.98142 1.69960 1.37041 1.08816 1.37869 0.86672 0.79741 0.77217 0.84458 1.20273 1.21285 1.20264 1.22253 0.97800 1.03931 0.94313 1.20327 0.92888 1.00121 0.98055 1.22449 1.00966 1.08033 0.99031 1.22007 0.82373 0.98425 0.97098 1.86019 1.21845 1.48350 1.65120 0.92011 0.91558 0.88195 0.89921 0.89941 0.92557 0.93101 0.96770 0.96590 0.93041 0.89561 0.90056 0.90246 0.90330 0.85970 0.82261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 101.05 1.07 1.43 16 2 O -0.35 -5.23 10.32 -44.40 -0.46 -5.69 16 3 C 0.48 8.20 6.06 36.00 0.22 8.42 16 4 O -0.48 -9.24 14.47 -18.75 -0.27 -9.51 16 5 C 0.13 2.08 0.76 -91.51 -0.07 2.01 16 6 C -0.13 -2.30 3.39 -26.73 -0.09 -2.39 16 7 C -0.11 -2.60 4.69 -26.74 -0.13 -2.72 16 8 C 0.03 0.71 4.97 -27.88 -0.14 0.57 16 9 C -0.52 -15.46 9.11 -34.44 -0.31 -15.77 16 10 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 12 N -0.90 -27.83 13.29 55.43 0.74 -27.09 16 13 Si 0.89 22.46 29.54 -169.99 -5.02 17.44 16 14 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 C -0.15 -1.80 5.11 -26.34 -0.13 -1.93 16 18 C -0.08 -0.86 5.58 -27.87 -0.16 -1.02 16 19 C -0.29 -3.32 9.45 -36.06 -0.34 -3.66 16 20 C 0.06 0.82 10.41 29.10 0.30 1.13 16 21 O -0.30 -4.74 9.19 -30.79 -0.28 -5.02 16 22 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 23 H 0.07 0.80 8.13 -51.93 -0.42 0.37 16 24 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.08 1.45 6.18 -51.93 -0.32 1.13 16 26 H 0.08 1.51 8.06 -51.93 -0.42 1.09 16 27 H 0.06 1.34 6.03 -51.93 -0.31 1.03 16 28 H 0.05 1.15 7.87 -51.93 -0.41 0.74 16 29 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.08 0.92 7.20 -51.93 -0.37 0.55 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 37 H 0.16 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 306.30 15.07 4.62 4.62 Total: -1.00 -33.79 306.30 -6.16 -39.96 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -5.60 Total: -2.33 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: 0.12 Total: -12.37 kcal Atomic # 7 Polarization: -27.83 SS G_CDS: 0.74 Total: -27.09 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -1.01 Total: -20.22 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.79 -6.16 -39.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691808587.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.017 kcal (2) G-P(sol) polarization free energy of solvation -33.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds