Wall clock time and date at job start Mon Mar 30 2020 06:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47319 * 2 1 4 4 C 1.52998 * 109.47345 * 120.00188 * 2 1 3 5 5 C 1.50703 * 109.47067 * 294.99914 * 4 2 1 6 6 H 1.07998 * 119.99664 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00156 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99880 * 0.02562 * 7 5 4 9 9 Si 1.86789 * 120.00102 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47087 * 90.00304 * 9 7 5 11 11 H 1.48502 * 109.47473 * 210.00274 * 9 7 5 12 12 H 1.48496 * 109.47407 * 330.00233 * 9 7 5 13 13 N 1.46498 * 109.47068 * 240.00181 * 2 1 3 14 14 C 1.36639 * 125.07134 * 300.02613 * 13 2 1 15 15 C 1.34420 * 109.96728 * 179.97438 * 14 13 2 16 16 C 1.46299 * 107.03681 * 359.97438 * 15 14 13 17 17 C 1.39893 * 133.82225 * 179.97438 * 16 15 14 18 18 C 1.36216 * 119.96917 * 180.02562 * 17 16 15 19 19 C 1.40275 * 120.37039 * 359.73165 * 18 17 16 20 20 C 1.43199 * 119.83666 * 180.28930 * 19 18 17 21 21 N 6.43610 * 124.23155 * 314.83169 * 2 1 3 22 22 C 1.39301 * 120.32311 * 0.54429 * 19 18 17 23 23 C 1.37822 * 125.07608 * 119.99710 * 13 2 1 24 24 H 1.08992 * 109.47704 * 59.99585 * 1 2 3 25 25 H 1.08998 * 109.47319 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47267 * 299.99674 * 1 2 3 27 27 H 1.08997 * 109.47086 * 54.99631 * 4 2 1 28 28 H 1.09001 * 109.47046 * 174.99753 * 4 2 1 29 29 H 0.96994 * 120.00305 * 179.97438 * 8 7 5 30 30 H 1.08000 * 125.01142 * 0.02562 * 14 13 2 31 31 H 1.08004 * 126.47904 * 179.97438 * 15 14 13 32 32 H 1.07999 * 120.01602 * 0.03041 * 17 16 15 33 33 H 1.07998 * 119.81292 * 180.02562 * 18 17 16 34 34 H 1.08002 * 120.17089 * 179.74967 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4766 6 1 1.0807 0.9745 2.3756 7 6 1.9924 -0.4023 3.7283 8 7 2.6756 -1.5194 3.8512 9 14 1.4989 0.5628 5.2496 10 1 0.1713 0.0954 5.7231 11 1 2.5080 0.3520 6.3185 12 1 1.4250 2.0080 4.9167 13 7 2.0182 -0.6906 -1.1962 14 6 1.7523 -1.9924 -1.5147 15 6 2.3497 -2.3122 -2.6756 16 6 3.0551 -1.1168 -3.1382 17 6 3.8426 -0.8293 -4.2581 18 6 4.3772 0.4139 -4.4130 19 6 4.1384 1.4127 -3.4574 20 6 4.7010 2.7175 -3.6349 21 7 5.1505 3.7516 -3.7737 22 6 3.3612 1.1399 -2.3341 23 6 2.8139 -0.1239 -2.1685 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6053 -1.7198 1.2951 28 1 3.1263 -0.7995 1.2055 29 1 2.9229 -1.8423 4.7317 30 1 1.1503 -2.6649 -0.9216 31 1 2.3154 -3.2703 -3.1729 32 1 4.0265 -1.5927 -4.9996 33 1 4.9844 0.6332 -5.2788 34 1 3.1823 1.9095 -1.5979 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695819708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:40 Heat of formation + Delta-G solvation = 75.232331 kcal Electronic energy + Delta-G solvation = -17471.202196 eV Core-core repulsion = 14755.181463 eV Total energy + Delta-G solvation = -2716.020733 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.17141 -37.80060 -36.05508 -34.68161 -32.56699 -31.27292 -29.25161 -28.59447 -27.17797 -23.99515 -23.31356 -22.13416 -21.40289 -19.35252 -17.90589 -16.93950 -16.27620 -15.81459 -14.86236 -14.65418 -14.42064 -14.00686 -13.84862 -13.62638 -13.33907 -12.93844 -12.60382 -12.48189 -12.40094 -12.09464 -11.74307 -11.62158 -11.22636 -11.09362 -11.00984 -10.82145 -10.59955 -10.26243 -9.82885 -9.43172 -9.40350 -8.56150 -8.00317 -7.41698 -6.20322 -4.25393 0.85965 1.58511 2.72842 2.85179 3.19380 3.20743 3.27475 3.28443 3.31224 4.04685 4.10235 4.30689 4.81288 5.02750 5.09162 5.16391 5.30990 5.40788 5.59210 5.68234 5.70342 5.82234 5.89306 6.06199 6.07979 6.30223 6.37566 6.49034 6.54816 6.62645 6.82600 6.96916 7.29450 7.35928 7.54824 7.57550 7.60659 7.78867 8.11350 8.79150 9.40195 10.90683 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.022094 B = 0.005402 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.999420 B = 5181.542409 C = 5936.449086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.127 3.873 3 H 0.087 0.913 4 C 0.020 3.980 5 C -0.526 4.526 6 H 0.060 0.940 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.895 3.105 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.458 5.458 14 C 0.089 3.911 15 C -0.232 4.232 16 C -0.083 4.083 17 C -0.075 4.075 18 C -0.110 4.110 19 C -0.031 4.031 20 C 0.268 3.732 21 N -0.437 5.437 22 C -0.058 4.058 23 C 0.088 3.912 24 H 0.042 0.958 25 H 0.056 0.944 26 H 0.084 0.916 27 H 0.025 0.975 28 H 0.024 0.976 29 H 0.264 0.736 30 H 0.168 0.832 31 H 0.145 0.855 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.809 -1.387 -12.990 13.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.027 3.973 3 H 0.105 0.895 4 C -0.018 4.018 5 C -0.565 4.565 6 H 0.078 0.922 7 C -0.140 4.140 8 N -0.527 5.527 9 Si 0.722 3.278 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.136 5.136 14 C -0.040 4.040 15 C -0.256 4.256 16 C -0.089 4.089 17 C -0.094 4.094 18 C -0.132 4.132 19 C -0.036 4.036 20 C -0.047 4.047 21 N -0.113 5.113 22 C -0.081 4.081 23 C -0.020 4.020 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.103 0.897 27 H 0.043 0.957 28 H 0.042 0.958 29 H 0.073 0.927 30 H 0.185 0.815 31 H 0.163 0.837 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.170 0.269 -12.746 12.803 hybrid contribution -0.381 -0.019 1.156 1.218 sum -1.551 0.250 -11.590 11.696 Atomic orbital electron populations 1.22056 0.94236 1.02354 1.01902 1.21943 0.94829 0.97002 0.83496 0.89530 1.19456 0.97118 0.95988 0.89190 1.21008 1.36278 1.08755 0.90424 0.92189 1.24985 0.94783 0.95013 0.99246 1.69954 1.37864 1.20933 1.23953 0.86543 0.78357 0.80349 0.82505 1.20487 1.21081 1.19751 1.44773 1.40142 1.09859 1.18869 1.21933 1.00072 0.85447 0.96538 1.21584 1.07048 0.98216 0.98775 1.19410 1.00327 0.93989 0.95146 1.20059 0.96756 0.96148 0.96432 1.20402 1.01759 0.92352 0.98638 1.15474 1.03141 0.87194 0.97812 1.25723 0.93052 0.92690 0.93203 1.81212 1.09991 1.11525 1.08550 1.19993 0.96809 0.94592 0.96751 1.18014 0.98299 0.94354 0.91350 0.93919 0.92505 0.89748 0.95681 0.95790 0.92668 0.81491 0.83707 0.85493 0.85655 0.85381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.04 37.15 0.34 -2.04 16 2 C 0.13 2.32 2.95 -67.94 -0.20 2.12 16 3 H 0.09 1.57 7.33 -51.93 -0.38 1.19 16 4 C 0.02 0.46 4.43 -27.88 -0.12 0.34 16 5 C -0.53 -13.36 8.41 -34.44 -0.29 -13.65 16 6 H 0.06 1.46 7.06 -52.49 -0.37 1.09 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 8 N -0.89 -25.09 13.29 55.43 0.74 -24.35 16 9 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 N -0.46 -7.61 2.65 -107.38 -0.28 -7.89 16 14 C 0.09 1.34 10.24 -16.76 -0.17 1.16 16 15 C -0.23 -3.14 11.08 -37.69 -0.42 -3.55 16 16 C -0.08 -1.18 6.37 -105.04 -0.67 -1.85 16 17 C -0.08 -0.88 10.03 -39.69 -0.40 -1.28 16 18 C -0.11 -1.27 9.67 -39.54 -0.38 -1.65 16 19 C -0.03 -0.42 5.74 -106.81 -0.61 -1.03 16 20 C 0.27 3.81 15.30 -22.47 -0.34 3.47 16 21 N -0.44 -6.99 18.54 41.84 0.78 -6.21 16 22 C -0.06 -0.85 9.50 -39.01 -0.37 -1.22 16 23 C 0.09 1.38 6.80 -84.00 -0.57 0.81 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.88 7.89 -51.93 -0.41 0.47 16 26 H 0.08 1.42 6.95 -51.93 -0.36 1.06 16 27 H 0.02 0.61 8.04 -51.93 -0.42 0.19 16 28 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.17 2.23 8.06 -52.49 -0.42 1.80 16 31 H 0.15 1.56 8.06 -52.48 -0.42 1.14 16 32 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.13 1.80 7.55 -52.49 -0.40 1.40 16 LS Contribution 301.99 15.07 4.55 4.55 Total: -1.00 -28.59 301.99 -7.56 -36.16 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -4.01 Total: -0.77 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -4.31 Total: -16.81 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 1.23 Total: -38.46 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.59 -7.56 -36.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695819708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.388 kcal (2) G-P(sol) polarization free energy of solvation -28.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds