Wall clock time and date at job start Mon Mar 30 2020 06:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47319 * 2 1 4 4 C 1.52998 * 109.47345 * 120.00188 * 2 1 3 5 5 C 1.50703 * 109.47067 * 294.99914 * 4 2 1 6 6 H 1.07998 * 119.99664 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00156 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99880 * 0.02562 * 7 5 4 9 9 Si 1.86789 * 120.00102 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47087 * 90.00304 * 9 7 5 11 11 H 1.48502 * 109.47473 * 210.00274 * 9 7 5 12 12 H 1.48496 * 109.47407 * 330.00233 * 9 7 5 13 13 N 1.46498 * 109.47068 * 240.00181 * 2 1 3 14 14 C 1.36639 * 125.07134 * 300.02613 * 13 2 1 15 15 C 1.34420 * 109.96728 * 179.97438 * 14 13 2 16 16 C 1.46299 * 107.03681 * 359.97438 * 15 14 13 17 17 C 1.39893 * 133.82225 * 179.97438 * 16 15 14 18 18 C 1.36216 * 119.96917 * 180.02562 * 17 16 15 19 19 C 1.40275 * 120.37039 * 359.73165 * 18 17 16 20 20 C 1.43199 * 119.83666 * 180.28930 * 19 18 17 21 21 N 6.43610 * 124.23155 * 314.83169 * 2 1 3 22 22 C 1.39301 * 120.32311 * 0.54429 * 19 18 17 23 23 C 1.37822 * 125.07608 * 119.99710 * 13 2 1 24 24 H 1.08992 * 109.47704 * 59.99585 * 1 2 3 25 25 H 1.08998 * 109.47319 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47267 * 299.99674 * 1 2 3 27 27 H 1.08997 * 109.47086 * 54.99631 * 4 2 1 28 28 H 1.09001 * 109.47046 * 174.99753 * 4 2 1 29 29 H 0.96994 * 120.00305 * 179.97438 * 8 7 5 30 30 H 1.08000 * 125.01142 * 0.02562 * 14 13 2 31 31 H 1.08004 * 126.47904 * 179.97438 * 15 14 13 32 32 H 1.07999 * 120.01602 * 0.03041 * 17 16 15 33 33 H 1.07998 * 119.81292 * 180.02562 * 18 17 16 34 34 H 1.08002 * 120.17089 * 179.74967 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4766 6 1 1.0807 0.9745 2.3756 7 6 1.9924 -0.4023 3.7283 8 7 2.6756 -1.5194 3.8512 9 14 1.4989 0.5628 5.2496 10 1 0.1713 0.0954 5.7231 11 1 2.5080 0.3520 6.3185 12 1 1.4250 2.0080 4.9167 13 7 2.0182 -0.6906 -1.1962 14 6 1.7523 -1.9924 -1.5147 15 6 2.3497 -2.3122 -2.6756 16 6 3.0551 -1.1168 -3.1382 17 6 3.8426 -0.8293 -4.2581 18 6 4.3772 0.4139 -4.4130 19 6 4.1384 1.4127 -3.4574 20 6 4.7010 2.7175 -3.6349 21 7 5.1505 3.7516 -3.7737 22 6 3.3612 1.1399 -2.3341 23 6 2.8139 -0.1239 -2.1685 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6053 -1.7198 1.2951 28 1 3.1263 -0.7995 1.2055 29 1 2.9229 -1.8423 4.7317 30 1 1.1503 -2.6649 -0.9216 31 1 2.3154 -3.2703 -3.1729 32 1 4.0265 -1.5927 -4.9996 33 1 4.9844 0.6332 -5.2788 34 1 3.1823 1.9095 -1.5979 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695819708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:39 Heat of formation + Delta-G solvation = 62.093191 kcal Electronic energy + Delta-G solvation = -17471.771952 eV Core-core repulsion = 14755.181463 eV Total energy + Delta-G solvation = -2716.590489 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.30008 -38.94028 -37.31360 -36.14467 -34.32961 -32.46113 -30.35962 -29.90420 -28.78836 -25.70702 -24.41953 -23.38310 -22.67576 -20.54984 -19.10511 -18.66119 -17.65367 -16.99098 -16.61122 -15.86200 -15.69672 -15.26963 -14.97481 -14.86107 -14.64065 -14.30959 -14.05348 -13.71764 -13.67060 -13.52183 -13.14110 -12.87390 -12.77470 -12.64870 -12.41140 -12.29685 -11.93346 -11.83478 -11.39937 -11.34341 -10.60500 -10.57250 -9.12109 -8.53016 -8.23580 -6.35015 -0.23771 0.58245 1.40481 1.41731 1.51521 1.57663 1.70545 2.00867 2.17800 2.40250 2.91864 3.04643 3.11213 3.75832 3.87947 4.01242 4.11811 4.27927 4.33204 4.44868 4.50546 4.71173 4.77933 4.92706 4.98996 5.05321 5.10982 5.25960 5.37003 5.38617 5.47651 5.55142 5.72404 5.85592 5.92920 6.08835 6.34718 6.44293 6.47539 6.79783 7.34759 8.87725 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.022094 B = 0.005402 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.999420 B = 5181.542409 C = 5936.449086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.140 3.860 3 H 0.082 0.918 4 C 0.031 3.969 5 C -0.534 4.534 6 H 0.069 0.931 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.961 3.039 10 H -0.270 1.270 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.472 5.472 14 C 0.062 3.938 15 C -0.217 4.217 16 C -0.094 4.094 17 C -0.065 4.065 18 C -0.101 4.101 19 C -0.028 4.028 20 C 0.286 3.714 21 N -0.469 5.469 22 C -0.076 4.076 23 C 0.063 3.937 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.007 0.993 28 H -0.015 1.015 29 H 0.264 0.736 30 H 0.174 0.826 31 H 0.176 0.824 32 H 0.164 0.836 33 H 0.157 0.843 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.136 -1.428 -14.704 14.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.039 3.961 3 H 0.100 0.900 4 C -0.006 4.006 5 C -0.572 4.572 6 H 0.088 0.912 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.785 3.215 10 H -0.195 1.195 11 H -0.214 1.214 12 H -0.188 1.188 13 N -0.153 5.153 14 C -0.065 4.065 15 C -0.241 4.241 16 C -0.100 4.100 17 C -0.083 4.083 18 C -0.123 4.123 19 C -0.033 4.033 20 C -0.028 4.028 21 N -0.145 5.145 22 C -0.100 4.100 23 C -0.044 4.044 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.093 0.907 27 H 0.025 0.975 28 H 0.003 0.997 29 H 0.072 0.928 30 H 0.191 0.809 31 H 0.193 0.807 32 H 0.181 0.819 33 H 0.175 0.825 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.506 0.229 -14.487 14.567 hybrid contribution -0.217 -0.038 1.584 1.600 sum -1.723 0.191 -12.902 13.018 Atomic orbital electron populations 1.21951 0.92462 1.02788 1.02420 1.21516 0.96085 0.96052 0.82479 0.89955 1.19232 0.94484 0.95516 0.91415 1.21459 1.35473 1.08982 0.91315 0.91238 1.25867 0.94878 0.95912 1.02547 1.70088 1.39542 1.22767 1.24557 0.85508 0.78074 0.79282 0.78590 1.19546 1.21353 1.18785 1.44610 1.41397 1.10589 1.18689 1.22252 1.01447 0.85134 0.97712 1.21972 1.05227 0.99049 0.97832 1.19782 1.00850 0.93727 0.95678 1.20450 0.94995 0.96939 0.95934 1.20765 1.01157 0.91598 0.98742 1.15568 1.02678 0.87150 0.97882 1.25803 0.92230 0.92520 0.92217 1.81231 1.11164 1.12384 1.09699 1.20030 0.97936 0.94485 0.97521 1.18323 0.98860 0.95282 0.91914 0.91791 0.92135 0.90666 0.97492 0.99689 0.92758 0.80905 0.80675 0.81856 0.82538 0.85973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.42 9.04 71.98 0.65 -3.76 16 2 C 0.14 5.21 2.95 44.99 0.13 5.34 16 3 H 0.08 3.08 7.33 -2.39 -0.02 3.06 16 4 C 0.03 1.50 4.43 29.85 0.13 1.63 16 5 C -0.53 -27.64 8.41 25.60 0.22 -27.43 16 6 H 0.07 3.39 7.06 -2.91 -0.02 3.37 16 7 C 0.01 0.36 5.46 84.65 0.46 0.82 16 8 N -0.93 -53.95 13.29 21.45 0.28 -53.66 16 9 Si 0.96 42.00 29.54 68.60 2.03 44.03 16 10 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 11 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 13 N -0.47 -15.81 2.65 -493.65 -1.31 -17.12 16 14 C 0.06 1.83 10.24 83.07 0.85 2.68 16 15 C -0.22 -5.41 11.08 23.49 0.26 -5.15 16 16 C -0.09 -2.48 6.37 -20.14 -0.13 -2.61 16 17 C -0.07 -1.28 10.03 22.20 0.22 -1.06 16 18 C -0.10 -1.99 9.67 22.29 0.22 -1.77 16 19 C -0.03 -0.70 5.74 -21.28 -0.12 -0.82 16 20 C 0.29 7.80 15.30 88.33 1.35 9.16 16 21 N -0.47 -14.60 18.54 19.00 0.35 -14.25 16 22 C -0.08 -2.21 9.50 22.64 0.22 -1.99 16 23 C 0.06 1.96 6.80 38.96 0.26 2.22 16 24 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.06 1.86 7.89 -2.39 -0.02 1.84 16 26 H 0.07 2.51 6.95 -2.39 -0.02 2.50 16 27 H 0.01 0.34 8.04 -2.39 -0.02 0.33 16 28 H -0.02 -0.84 8.14 -2.39 -0.02 -0.86 16 29 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 30 H 0.17 4.65 8.06 -2.91 -0.02 4.63 16 31 H 0.18 3.17 8.06 -2.91 -0.02 3.15 16 32 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 33 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 34 H 0.12 3.54 7.55 -2.91 -0.02 3.52 16 Total: -1.00 -62.71 301.99 7.18 -55.52 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 1.10 Total: 8.23 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: 4.72 Total: -22.74 kcal Atomic # 7 Polarization: -84.37 SS G_CDS: -0.67 Total: -85.04 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -62.71 7.18 -55.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695819708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.618 kcal (2) G-P(sol) polarization free energy of solvation -62.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds