Wall clock time and date at job start Mon Mar 30 2020 06:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47342 * 2 1 4 4 C 1.53003 * 109.47324 * 119.99983 * 2 1 3 5 5 C 1.50695 * 109.46765 * 295.00078 * 4 2 1 6 6 H 1.07998 * 120.00533 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99819 * 179.97438 * 5 4 2 8 8 N 1.31518 * 120.00043 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99985 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.46890 * 90.00328 * 9 7 5 11 11 H 1.48501 * 109.46968 * 209.99940 * 9 7 5 12 12 H 1.48500 * 109.47374 * 330.00400 * 9 7 5 13 13 N 1.46499 * 109.47028 * 239.99766 * 2 1 3 14 14 C 1.36855 * 125.02197 * 300.02486 * 13 2 1 15 15 C 1.34194 * 109.96002 * 180.19415 * 14 13 2 16 16 C 1.46570 * 106.93462 * 359.65151 * 15 14 13 17 17 C 1.39305 * 133.95107 * 180.09741 * 16 15 14 18 18 C 1.39183 * 119.38719 * 180.31381 * 17 16 15 19 19 C 1.43199 * 119.97999 * 179.97438 * 18 17 16 20 20 N 7.80346 * 123.41310 * 278.91473 * 2 1 3 21 21 C 1.40228 * 120.03949 * 359.95314 * 18 17 16 22 22 C 1.36341 * 120.66186 * 0.02562 * 21 18 17 23 23 C 1.37492 * 125.01934 * 119.98794 * 13 2 1 24 24 H 1.08997 * 109.46890 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47237 * 300.00288 * 1 2 3 26 26 H 1.08996 * 109.47177 * 60.00251 * 1 2 3 27 27 H 1.09002 * 109.46706 * 54.99906 * 4 2 1 28 28 H 1.09001 * 109.47440 * 174.99855 * 4 2 1 29 29 H 0.97001 * 119.99905 * 180.02562 * 8 7 5 30 30 H 1.08002 * 125.01534 * 359.92465 * 14 13 2 31 31 H 1.08002 * 126.53350 * 179.74253 * 15 14 13 32 32 H 1.07995 * 120.30779 * 0.26739 * 17 16 15 33 33 H 1.07996 * 119.66998 * 180.02562 * 21 18 17 34 34 H 1.08002 * 119.87082 * 180.02562 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0571 2.4765 6 1 1.0799 0.9741 2.3757 7 6 1.9924 -0.4022 3.7283 8 7 1.6440 0.2768 4.7994 9 14 2.9616 -1.9895 3.9029 10 1 4.4152 -1.6871 3.8789 11 1 2.6132 -2.6431 5.1900 12 1 2.6268 -2.9002 2.7787 13 7 2.0183 -0.6907 -1.1961 14 6 1.7513 -1.9947 -1.5141 15 6 2.3513 -2.3163 -2.6706 16 6 3.0538 -1.1168 -3.1351 17 6 3.8381 -0.8262 -4.2491 18 6 4.3773 0.4492 -4.3909 19 6 5.1858 0.7616 -5.5307 20 7 5.8271 1.0094 -6.4350 21 6 4.1288 1.4284 -3.4184 22 6 3.3610 1.1461 -2.3277 23 6 2.8119 -0.1242 -2.1656 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6054 -1.7198 1.2951 28 1 3.1264 -0.7995 1.2056 29 1 1.8913 -0.0461 5.6801 30 1 1.1505 -2.6670 -0.9196 31 1 2.3209 -3.2758 -3.1655 32 1 4.0268 -1.5836 -4.9954 33 1 4.5497 2.4162 -3.5347 34 1 3.1775 1.9102 -1.5867 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695821641.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:45 Heat of formation + Delta-G solvation = 78.231261 kcal Electronic energy + Delta-G solvation = -17448.773377 eV Core-core repulsion = 14732.882687 eV Total energy + Delta-G solvation = -2715.890690 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.29610 -37.90317 -36.07036 -34.83174 -32.57656 -31.41901 -29.38635 -28.77166 -27.67292 -24.10191 -23.01439 -22.22330 -21.39505 -19.08484 -18.35625 -17.44106 -16.26916 -16.09638 -14.86275 -14.56867 -14.32155 -14.08721 -13.84977 -13.67705 -13.49268 -12.99371 -12.76226 -12.59975 -12.56182 -12.29783 -12.09454 -11.76662 -11.31027 -11.24508 -11.03269 -10.83700 -10.37276 -10.21346 -10.00717 -9.59778 -9.45034 -8.74083 -8.10522 -7.54286 -6.24580 -4.26072 0.93159 1.32990 2.71539 2.88608 3.08249 3.09434 3.17995 3.26578 3.27916 3.98555 4.02852 4.27288 4.69797 4.90470 4.98324 5.08559 5.19524 5.35919 5.49967 5.59168 5.67762 5.72092 5.78503 5.91646 6.03981 6.19642 6.31442 6.34762 6.40362 6.60834 6.69730 6.83653 6.85984 6.96470 7.37761 7.40956 7.55207 7.61932 8.26053 8.75898 9.35689 10.87612 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.029716 B = 0.004883 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.028744 B = 5732.785554 C = 5827.439877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.138 3.862 3 H 0.094 0.906 4 C -0.017 4.017 5 C -0.526 4.526 6 H 0.078 0.922 7 C 0.074 3.926 8 N -0.895 5.895 9 Si 0.877 3.123 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.266 1.266 13 N -0.461 5.461 14 C 0.069 3.931 15 C -0.213 4.213 16 C -0.121 4.121 17 C -0.011 4.011 18 C -0.077 4.077 19 C 0.270 3.730 20 N -0.445 5.445 21 C -0.063 4.063 22 C -0.120 4.120 23 C 0.125 3.875 24 H 0.055 0.945 25 H 0.089 0.911 26 H 0.044 0.956 27 H 0.024 0.976 28 H 0.019 0.981 29 H 0.266 0.734 30 H 0.167 0.833 31 H 0.146 0.854 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.031 -2.910 -12.973 13.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.038 3.962 3 H 0.112 0.888 4 C -0.054 4.054 5 C -0.564 4.564 6 H 0.096 0.904 7 C -0.129 4.129 8 N -0.532 5.532 9 Si 0.704 3.296 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.190 1.190 13 N -0.140 5.140 14 C -0.057 4.057 15 C -0.237 4.237 16 C -0.126 4.126 17 C -0.032 4.032 18 C -0.082 4.082 19 C -0.044 4.044 20 N -0.121 5.121 21 C -0.085 4.085 22 C -0.141 4.141 23 C 0.014 3.986 24 H 0.074 0.926 25 H 0.108 0.892 26 H 0.063 0.937 27 H 0.042 0.958 28 H 0.037 0.963 29 H 0.076 0.924 30 H 0.184 0.816 31 H 0.164 0.836 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.810 -2.379 -13.837 14.063 hybrid contribution 0.263 -0.954 0.786 1.263 sum 1.074 -3.333 -13.051 13.513 Atomic orbital electron populations 1.22063 0.93782 1.02412 1.02406 1.21702 0.95147 0.96972 0.82424 0.88798 1.19937 0.96582 0.96661 0.92268 1.20871 1.36953 1.09972 0.88620 0.90428 1.24950 0.95244 0.96911 0.95774 1.69884 1.46079 1.39068 0.98208 0.86822 0.80812 0.84150 0.77789 1.20126 1.21136 1.19041 1.44842 1.40192 1.09948 1.19042 1.21867 1.01152 0.85582 0.97128 1.21580 1.05834 0.97917 0.98400 1.19032 1.03098 0.94614 0.95856 1.20447 0.93095 0.94145 0.95521 1.15615 1.04083 0.95670 0.92815 1.25747 0.92742 0.93182 0.92706 1.81213 1.11152 1.08314 1.11404 1.20346 0.97511 0.98277 0.92349 1.19730 1.00561 0.94356 0.99406 1.18528 0.95415 0.94616 0.89995 0.92600 0.89247 0.93657 0.95808 0.96255 0.92391 0.81567 0.83623 0.85392 0.85221 0.85221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.04 37.16 0.34 -1.97 16 2 C 0.14 2.34 2.95 -67.93 -0.20 2.14 16 3 H 0.09 1.59 7.29 -51.93 -0.38 1.21 16 4 C -0.02 -0.35 3.49 -27.88 -0.10 -0.45 16 5 C -0.53 -13.30 8.96 -34.44 -0.31 -13.61 16 6 H 0.08 2.08 7.30 -52.49 -0.38 1.70 16 7 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 8 N -0.89 -25.69 13.96 55.43 0.77 -24.92 16 9 Si 0.88 20.29 27.47 -169.99 -4.67 15.62 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 12 H -0.27 -5.87 6.54 56.52 0.37 -5.50 16 13 N -0.46 -7.12 2.65 -107.29 -0.28 -7.40 16 14 C 0.07 0.96 10.24 -16.73 -0.17 0.79 16 15 C -0.21 -2.69 11.09 -37.65 -0.42 -3.11 16 16 C -0.12 -1.63 6.36 -105.16 -0.67 -2.30 16 17 C -0.01 -0.13 9.81 -38.83 -0.38 -0.51 16 18 C -0.08 -0.91 5.73 -106.87 -0.61 -1.53 16 19 C 0.27 3.47 15.32 -22.47 -0.34 3.13 16 20 N -0.44 -6.54 18.54 41.84 0.78 -5.76 16 21 C -0.06 -0.72 9.66 -39.52 -0.38 -1.11 16 22 C -0.12 -1.55 9.73 -39.85 -0.39 -1.94 16 23 C 0.13 1.83 6.81 -83.93 -0.57 1.26 16 24 H 0.05 0.82 7.89 -51.93 -0.41 0.41 16 25 H 0.09 1.52 6.95 -51.93 -0.36 1.16 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.02 0.50 7.09 -51.93 -0.37 0.13 16 28 H 0.02 0.42 7.57 -51.93 -0.39 0.03 16 29 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 30 H 0.17 2.01 8.06 -52.49 -0.42 1.58 16 31 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 32 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.13 1.54 7.52 -52.49 -0.39 1.15 16 LS Contribution 298.32 15.07 4.50 4.50 Total: -1.00 -28.70 298.32 -7.18 -35.89 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -3.97 Total: -0.61 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -4.30 Total: -17.30 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 1.27 Total: -38.08 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.67 Total: 15.62 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.70 -7.18 -35.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695821641.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.117 kcal (2) G-P(sol) polarization free energy of solvation -28.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds