Wall clock time and date at job start Mon Mar 30 2020 06:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47342 * 2 1 4 4 C 1.53003 * 109.47324 * 119.99983 * 2 1 3 5 5 C 1.50695 * 109.46765 * 295.00078 * 4 2 1 6 6 H 1.07998 * 120.00533 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99819 * 179.97438 * 5 4 2 8 8 N 1.31518 * 120.00043 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99985 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.46890 * 90.00328 * 9 7 5 11 11 H 1.48501 * 109.46968 * 209.99940 * 9 7 5 12 12 H 1.48500 * 109.47374 * 330.00400 * 9 7 5 13 13 N 1.46499 * 109.47028 * 239.99766 * 2 1 3 14 14 C 1.36855 * 125.02197 * 300.02486 * 13 2 1 15 15 C 1.34194 * 109.96002 * 180.19415 * 14 13 2 16 16 C 1.46570 * 106.93462 * 359.65151 * 15 14 13 17 17 C 1.39305 * 133.95107 * 180.09741 * 16 15 14 18 18 C 1.39183 * 119.38719 * 180.31381 * 17 16 15 19 19 C 1.43199 * 119.97999 * 179.97438 * 18 17 16 20 20 N 7.80346 * 123.41310 * 278.91473 * 2 1 3 21 21 C 1.40228 * 120.03949 * 359.95314 * 18 17 16 22 22 C 1.36341 * 120.66186 * 0.02562 * 21 18 17 23 23 C 1.37492 * 125.01934 * 119.98794 * 13 2 1 24 24 H 1.08997 * 109.46890 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47237 * 300.00288 * 1 2 3 26 26 H 1.08996 * 109.47177 * 60.00251 * 1 2 3 27 27 H 1.09002 * 109.46706 * 54.99906 * 4 2 1 28 28 H 1.09001 * 109.47440 * 174.99855 * 4 2 1 29 29 H 0.97001 * 119.99905 * 180.02562 * 8 7 5 30 30 H 1.08002 * 125.01534 * 359.92465 * 14 13 2 31 31 H 1.08002 * 126.53350 * 179.74253 * 15 14 13 32 32 H 1.07995 * 120.30779 * 0.26739 * 17 16 15 33 33 H 1.07996 * 119.66998 * 180.02562 * 21 18 17 34 34 H 1.08002 * 119.87082 * 180.02562 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0571 2.4765 6 1 1.0799 0.9741 2.3757 7 6 1.9924 -0.4022 3.7283 8 7 1.6440 0.2768 4.7994 9 14 2.9616 -1.9895 3.9029 10 1 4.4152 -1.6871 3.8789 11 1 2.6132 -2.6431 5.1900 12 1 2.6268 -2.9002 2.7787 13 7 2.0183 -0.6907 -1.1961 14 6 1.7513 -1.9947 -1.5141 15 6 2.3513 -2.3163 -2.6706 16 6 3.0538 -1.1168 -3.1351 17 6 3.8381 -0.8262 -4.2491 18 6 4.3773 0.4492 -4.3909 19 6 5.1858 0.7616 -5.5307 20 7 5.8271 1.0094 -6.4350 21 6 4.1288 1.4284 -3.4184 22 6 3.3610 1.1461 -2.3277 23 6 2.8119 -0.1242 -2.1656 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6054 -1.7198 1.2951 28 1 3.1264 -0.7995 1.2056 29 1 1.8913 -0.0461 5.6801 30 1 1.1505 -2.6670 -0.9196 31 1 2.3209 -3.2758 -3.1655 32 1 4.0268 -1.5836 -4.9954 33 1 4.5497 2.4162 -3.5347 34 1 3.1775 1.9102 -1.5867 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695821641.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:45 Heat of formation + Delta-G solvation = 64.617370 kcal Electronic energy + Delta-G solvation = -17449.363719 eV Core-core repulsion = 14732.882687 eV Total energy + Delta-G solvation = -2716.481033 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 254.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.33378 -38.95189 -37.22808 -36.17049 -34.35956 -32.54895 -30.58041 -29.90298 -29.10773 -25.54985 -24.21706 -23.19930 -22.75901 -20.23566 -19.45666 -19.11566 -17.66317 -17.07174 -16.45742 -15.78706 -15.51458 -15.40864 -14.95626 -14.83378 -14.63474 -14.48036 -14.05708 -13.79396 -13.60637 -13.57318 -13.20649 -13.02444 -12.97999 -12.64766 -12.37215 -12.01817 -11.80069 -11.74176 -11.61590 -11.37800 -10.78644 -10.61447 -9.12637 -8.56508 -8.30083 -6.34592 -0.03644 0.35290 1.35388 1.37986 1.46877 1.69815 1.87763 1.97325 2.07652 2.33905 2.97812 3.04987 3.05646 3.70988 3.84279 3.99829 4.10955 4.22887 4.34894 4.41245 4.54446 4.70720 4.75103 4.86775 4.93254 5.06031 5.13404 5.17500 5.24780 5.34234 5.38064 5.45879 5.56281 5.77814 5.88303 6.20327 6.32374 6.44830 6.54762 6.72934 7.30130 8.85176 Molecular weight = 254.11amu Principal moments of inertia in cm(-1) A = 0.029716 B = 0.004883 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.028744 B = 5732.785554 C = 5827.439877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.148 3.852 3 H 0.088 0.912 4 C -0.010 4.010 5 C -0.521 4.521 6 H 0.049 0.951 7 C 0.015 3.985 8 N -0.944 5.944 9 Si 0.938 3.062 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.245 1.245 13 N -0.472 5.472 14 C 0.046 3.954 15 C -0.199 4.199 16 C -0.134 4.134 17 C 0.000 4.000 18 C -0.079 4.079 19 C 0.292 3.708 20 N -0.477 5.477 21 C -0.052 4.052 22 C -0.135 4.135 23 C 0.104 3.896 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.030 0.970 28 H 0.012 0.988 29 H 0.266 0.734 30 H 0.180 0.820 31 H 0.175 0.825 32 H 0.153 0.847 33 H 0.151 0.849 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.521 -4.464 -14.878 15.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.047 3.953 3 H 0.106 0.894 4 C -0.048 4.048 5 C -0.559 4.559 6 H 0.067 0.933 7 C -0.183 4.183 8 N -0.584 5.584 9 Si 0.762 3.238 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.168 1.168 13 N -0.152 5.152 14 C -0.079 4.079 15 C -0.223 4.223 16 C -0.140 4.140 17 C -0.022 4.022 18 C -0.084 4.084 19 C -0.022 4.022 20 N -0.154 5.154 21 C -0.074 4.074 22 C -0.156 4.156 23 C -0.006 4.006 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.048 0.952 28 H 0.030 0.970 29 H 0.075 0.925 30 H 0.197 0.803 31 H 0.192 0.808 32 H 0.170 0.830 33 H 0.169 0.831 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.362 -3.948 -15.780 16.324 hybrid contribution 0.090 -0.395 1.295 1.357 sum 1.452 -4.344 -14.485 15.192 Atomic orbital electron populations 1.21955 0.92784 1.02960 1.02168 1.21308 0.95841 0.96259 0.81910 0.89419 1.19794 0.96026 0.96634 0.92342 1.21188 1.35279 1.09126 0.90339 0.93277 1.25805 0.96601 1.00323 0.95610 1.70027 1.48349 1.41260 0.98808 0.85848 0.79131 0.80550 0.78266 1.20037 1.21159 1.16847 1.44659 1.41207 1.10662 1.18702 1.22236 1.02306 0.85191 0.98160 1.21948 1.04138 0.98590 0.97633 1.19270 1.03752 0.94784 0.96157 1.20676 0.91717 0.94502 0.95271 1.15650 1.04145 0.96033 0.92564 1.25728 0.91996 0.92214 0.92230 1.81247 1.12305 1.09385 1.12459 1.20562 0.96308 0.99127 0.91376 1.19871 1.01289 0.94209 1.00181 1.18891 0.95733 0.95612 0.90331 0.91653 0.91502 0.91781 0.95163 0.97012 0.92465 0.80309 0.80809 0.82978 0.83138 0.84948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.27 9.04 71.98 0.65 -3.62 16 2 C 0.15 4.95 2.95 44.99 0.13 5.08 16 3 H 0.09 2.99 7.29 -2.39 -0.02 2.98 16 4 C -0.01 -0.41 3.49 29.85 0.10 -0.31 16 5 C -0.52 -26.77 8.96 25.60 0.23 -26.54 16 6 H 0.05 2.74 7.30 -2.91 -0.02 2.72 16 7 C 0.01 0.79 5.47 84.66 0.46 1.25 16 8 N -0.94 -55.68 13.96 21.45 0.30 -55.38 16 9 Si 0.94 41.55 27.47 68.60 1.88 43.44 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.25 -9.93 6.54 99.48 0.65 -9.28 16 13 N -0.47 -13.80 2.65 -493.36 -1.31 -15.11 16 14 C 0.05 1.16 10.24 82.99 0.85 2.01 16 15 C -0.20 -4.39 11.09 23.52 0.26 -4.13 16 16 C -0.13 -3.25 6.36 -20.21 -0.13 -3.38 16 17 C 0.00 -0.01 9.81 22.75 0.22 0.21 16 18 C -0.08 -1.66 5.73 -21.32 -0.12 -1.79 16 19 C 0.29 6.81 15.32 88.33 1.35 8.16 16 20 N -0.48 -13.18 18.54 19.00 0.35 -12.83 16 21 C -0.05 -1.08 9.66 22.31 0.22 -0.86 16 22 C -0.14 -3.28 9.73 22.09 0.21 -3.06 16 23 C 0.10 2.87 6.81 39.16 0.27 3.13 16 24 H 0.06 1.83 7.89 -2.39 -0.02 1.81 16 25 H 0.07 2.32 6.95 -2.39 -0.02 2.30 16 26 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.03 1.21 7.09 -2.39 -0.02 1.20 16 28 H 0.01 0.50 7.57 -2.39 -0.02 0.48 16 29 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 30 H 0.18 3.86 8.06 -2.91 -0.02 3.83 16 31 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 32 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 33 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 34 H 0.13 3.06 7.52 -2.91 -0.02 3.03 16 Total: -1.00 -61.80 298.32 6.99 -54.81 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 1.05 Total: 8.92 kcal Atomic # 6 Polarization: -28.55 SS G_CDS: 4.71 Total: -23.84 kcal Atomic # 7 Polarization: -82.67 SS G_CDS: -0.65 Total: -83.32 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 1.88 Total: 43.44 kcal Total: -61.80 6.99 -54.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695821641.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.423 kcal (2) G-P(sol) polarization free energy of solvation -61.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds