Wall clock time and date at job start Mon Mar 30 2020 07:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46876 * 2 1 4 4 C 1.52996 * 109.47666 * 239.99808 * 2 1 3 5 5 H 1.09001 * 110.48335 * 63.91535 * 4 2 1 6 6 C 1.54610 * 110.54220 * 301.23425 * 4 2 1 7 7 O 1.44707 * 104.70745 * 217.62301 * 6 4 2 8 8 C 1.44542 * 105.45021 * 40.01226 * 7 6 4 9 9 C 1.53986 * 104.69757 * 320.02414 * 8 7 6 10 10 C 1.52486 * 110.17340 * 265.28941 * 9 8 7 11 11 C 1.53279 * 109.21575 * 293.48129 * 10 9 8 12 12 C 1.53175 * 108.95440 * 303.99479 * 11 10 9 13 13 C 1.53083 * 109.27138 * 57.48212 * 12 11 10 14 14 H 1.09003 * 109.48307 * 61.88389 * 13 12 11 15 15 C 1.50696 * 109.50278 * 181.92659 * 13 12 11 16 16 H 1.08000 * 120.00026 * 359.91301 * 15 13 12 17 17 C 1.37875 * 119.99951 * 179.97438 * 15 13 12 18 18 N 1.31519 * 120.00142 * 180.02562 * 17 15 13 19 19 Si 1.86803 * 120.00103 * 359.97438 * 17 15 13 20 20 H 1.48493 * 109.46955 * 90.00321 * 19 17 15 21 21 H 1.48498 * 109.46958 * 210.00381 * 19 17 15 22 22 H 1.48494 * 109.46857 * 330.00502 * 19 17 15 23 23 O 1.42200 * 110.36802 * 142.38523 * 9 8 7 24 24 H 1.09000 * 109.46837 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47282 * 60.00495 * 1 2 3 26 26 H 1.08997 * 109.47112 * 300.00290 * 1 2 3 27 27 H 1.09004 * 109.47363 * 119.99326 * 2 1 3 28 28 H 1.08999 * 109.47341 * 53.82276 * 3 2 1 29 29 H 1.09006 * 109.47180 * 173.82301 * 3 2 1 30 30 H 1.09001 * 109.46743 * 293.82125 * 3 2 1 31 31 H 1.09004 * 110.36514 * 336.35499 * 6 4 2 32 32 H 1.09002 * 110.37018 * 98.68339 * 6 4 2 33 33 H 1.08999 * 110.39134 * 201.22246 * 8 7 6 34 34 H 1.09000 * 110.39446 * 78.83076 * 8 7 6 35 35 H 1.08996 * 109.51087 * 53.40689 * 10 9 8 36 36 H 1.09003 * 109.51228 * 173.55856 * 10 9 8 37 37 H 1.08999 * 109.55586 * 184.14758 * 11 10 9 38 38 H 1.09000 * 109.64319 * 63.88863 * 11 10 9 39 39 H 1.08998 * 109.50129 * 297.54171 * 12 11 10 40 40 H 1.08999 * 109.50205 * 177.42373 * 12 11 10 41 41 H 0.96998 * 120.00041 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2491 5 1 1.7440 -0.1817 -2.1488 6 6 1.5132 -2.1742 -1.2899 7 8 2.6131 -2.9491 -1.8227 8 6 3.8020 -2.4032 -1.2080 9 6 3.5708 -0.8809 -1.1940 10 6 4.2113 -0.2403 -2.4206 11 6 5.7346 -0.3814 -2.3260 12 6 6.2106 0.2364 -1.0076 13 6 5.5000 -0.4540 0.1594 14 1 5.7612 -1.5122 0.1693 15 6 5.9290 0.1818 1.4566 16 1 6.6386 0.9959 1.4503 17 6 5.4165 -0.2767 2.6516 18 7 5.7905 0.2784 3.7837 19 14 4.1898 -1.6855 2.6627 20 1 4.9183 -2.9753 2.7659 21 1 3.2772 -1.5381 3.8249 22 1 3.3989 -1.6629 1.4062 23 8 4.0853 -0.3132 0.0040 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5137 0.8901 28 1 1.5891 1.9873 0.8295 29 1 3.1244 1.4446 0.1106 30 1 1.7697 1.9234 -0.9401 31 1 1.2615 -2.5147 -0.2854 32 1 0.6443 -2.2445 -1.9441 33 1 4.6829 -2.6481 -1.8014 34 1 3.9112 -2.7802 -0.1911 35 1 3.8544 -0.7407 -3.3208 36 1 3.9452 0.8160 -2.4606 37 1 6.2018 0.1385 -3.1623 38 1 6.0074 -1.4364 -2.3540 39 1 5.9754 1.3006 -0.9987 40 1 7.2876 0.1002 -0.9099 41 1 5.4296 -0.0439 4.6244 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699501269.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:43 Heat of formation + Delta-G solvation = -102.412032 kcal Electronic energy + Delta-G solvation = -21466.550837 eV Core-core repulsion = 18539.058290 eV Total energy + Delta-G solvation = -2927.492547 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.41179 -37.20605 -35.32601 -33.05970 -32.61406 -30.87671 -28.64066 -27.15278 -26.70771 -25.25099 -22.93305 -22.28553 -20.95978 -19.35950 -18.57779 -16.93138 -16.37458 -15.96663 -15.24016 -14.97351 -14.17996 -14.04935 -13.78448 -13.51051 -13.46006 -12.97571 -12.70821 -12.37868 -12.34058 -11.97651 -11.79819 -11.48530 -11.35268 -11.03369 -10.96391 -10.70896 -10.60897 -10.40282 -10.17175 -10.12132 -9.99595 -9.79117 -9.44348 -9.33687 -9.02136 -8.55654 -8.04420 -6.13945 -4.21902 3.33910 3.42462 3.57888 4.15752 4.47710 4.64839 4.89059 4.95086 5.14762 5.34708 5.36903 5.40673 5.46190 5.53213 5.61526 5.68671 5.71473 5.77265 5.99182 6.00202 6.04967 6.05685 6.08673 6.22826 6.23865 6.29858 6.34664 6.42282 6.44753 6.55462 6.61278 6.67201 6.70976 6.91999 7.03824 7.17511 7.23895 7.62617 8.40075 8.51942 8.89366 9.49830 10.96142 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.018026 B = 0.011861 C = 0.009794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.906239 B = 2360.035637 C = 2858.201310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.079 4.079 3 C -0.147 4.147 4 C -0.101 4.101 5 H 0.081 0.919 6 C 0.049 3.951 7 O -0.381 6.381 8 C 0.018 3.982 9 C 0.089 3.911 10 C -0.130 4.130 11 C -0.125 4.125 12 C -0.133 4.133 13 C 0.180 3.820 14 H 0.012 0.988 15 C -0.513 4.513 16 H 0.079 0.921 17 C 0.086 3.914 18 N -0.890 5.890 19 Si 0.861 3.139 20 H -0.289 1.289 21 H -0.294 1.294 22 H -0.212 1.212 23 O -0.347 6.347 24 H 0.048 0.952 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.084 0.916 28 H 0.042 0.958 29 H 0.094 0.906 30 H 0.035 0.965 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.774 -2.276 -10.813 13.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.097 4.097 3 C -0.204 4.204 4 C -0.120 4.120 5 H 0.100 0.900 6 C -0.027 4.027 7 O -0.300 6.300 8 C -0.059 4.059 9 C 0.048 3.952 10 C -0.168 4.168 11 C -0.163 4.163 12 C -0.171 4.171 13 C 0.125 3.875 14 H 0.030 0.970 15 C -0.550 4.550 16 H 0.097 0.903 17 C -0.118 4.118 18 N -0.527 5.527 19 Si 0.688 3.312 20 H -0.216 1.216 21 H -0.221 1.221 22 H -0.135 1.135 23 O -0.267 6.267 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.102 0.898 28 H 0.061 0.939 29 H 0.113 0.887 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.916 -2.347 -10.648 13.474 hybrid contribution -0.379 -0.637 0.198 0.767 sum -8.295 -2.983 -10.451 13.672 Atomic orbital electron populations 1.21950 0.96551 1.00924 1.01315 1.20958 0.93511 0.97495 0.97746 1.21928 1.04891 0.94186 0.99388 1.22529 0.93820 0.96100 0.99529 0.90049 1.23565 0.90412 0.89953 0.98816 1.89088 1.16034 1.57687 1.67143 1.24217 0.88549 0.94369 0.98751 1.22047 0.93024 0.91663 0.88515 1.21986 0.96097 1.01295 0.97397 1.21726 0.95222 1.00623 0.98689 1.22044 1.00271 1.00673 0.94118 1.20211 0.78037 0.94902 0.94372 0.96998 1.20885 1.25975 1.20607 0.87515 0.90336 1.25020 0.95118 0.96470 0.95219 1.69925 1.43368 1.41480 0.97971 0.87301 0.82577 0.81541 0.79771 1.21557 1.22061 1.13525 1.88418 1.25202 1.77900 1.35142 0.93293 0.93204 0.92863 0.89790 0.93877 0.88710 0.94564 0.92289 0.89633 0.89221 0.91452 0.91988 0.91299 0.92611 0.92516 0.91884 0.92013 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 8.95 37.16 0.33 -1.64 16 2 C -0.08 -1.28 1.91 -90.62 -0.17 -1.45 16 3 C -0.15 -2.48 8.84 37.16 0.33 -2.15 16 4 C -0.10 -1.57 2.31 -89.26 -0.21 -1.78 16 5 H 0.08 1.16 7.71 -51.93 -0.40 0.76 16 6 C 0.05 0.74 6.13 38.00 0.23 0.97 16 7 O -0.38 -6.54 11.66 -35.23 -0.41 -6.95 16 8 C 0.02 0.32 5.52 37.67 0.21 0.53 16 9 C 0.09 1.55 0.75 -89.85 -0.07 1.48 16 10 C -0.13 -2.04 4.66 -26.85 -0.13 -2.16 16 11 C -0.13 -1.98 5.81 -26.50 -0.15 -2.13 16 12 C -0.13 -2.55 5.34 -26.60 -0.14 -2.69 16 13 C 0.18 4.02 1.75 -27.84 -0.05 3.97 16 14 H 0.01 0.28 6.60 -51.93 -0.34 -0.06 16 15 C -0.51 -13.95 9.38 -34.44 -0.32 -14.27 16 16 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 17 C 0.09 2.43 5.47 -17.82 -0.10 2.34 16 18 N -0.89 -26.76 13.96 55.43 0.77 -25.98 16 19 Si 0.86 20.95 26.16 -169.99 -4.45 16.50 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 22 H -0.21 -4.74 2.60 56.52 0.15 -4.59 16 23 O -0.35 -7.21 2.88 -35.23 -0.10 -7.31 16 24 H 0.05 0.59 7.03 -51.93 -0.37 0.23 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.08 1.61 5.94 -51.93 -0.31 1.30 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.09 1.89 5.77 -51.93 -0.30 1.59 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.90 7.56 -51.93 -0.39 0.51 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.09 1.49 6.19 -51.93 -0.32 1.17 16 34 H 0.07 1.31 6.10 -51.93 -0.32 1.00 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.87 6.55 -51.93 -0.34 0.53 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 295.47 15.07 4.45 4.45 Total: -1.00 -28.81 295.47 -7.09 -35.90 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -7.12 Total: 2.39 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: -0.24 Total: -18.99 kcal Atomic # 7 Polarization: -26.76 SS G_CDS: 0.77 Total: -25.98 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.51 Total: -14.27 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.45 Total: 16.50 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.81 -7.09 -35.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699501269.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.513 kcal (2) G-P(sol) polarization free energy of solvation -28.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds