Wall clock time and date at job start Mon Mar 30 2020 07:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46876 * 2 1 4 4 C 1.52996 * 109.47666 * 239.99808 * 2 1 3 5 5 H 1.09001 * 110.48335 * 63.91535 * 4 2 1 6 6 C 1.54610 * 110.54220 * 301.23425 * 4 2 1 7 7 O 1.44707 * 104.70745 * 217.62301 * 6 4 2 8 8 C 1.44542 * 105.45021 * 40.01226 * 7 6 4 9 9 C 1.53986 * 104.69757 * 320.02414 * 8 7 6 10 10 C 1.52486 * 110.17340 * 265.28941 * 9 8 7 11 11 C 1.53279 * 109.21575 * 293.48129 * 10 9 8 12 12 C 1.53175 * 108.95440 * 303.99479 * 11 10 9 13 13 C 1.53083 * 109.27138 * 57.48212 * 12 11 10 14 14 H 1.09003 * 109.48307 * 61.88389 * 13 12 11 15 15 C 1.50696 * 109.50278 * 181.92659 * 13 12 11 16 16 H 1.08000 * 120.00026 * 359.91301 * 15 13 12 17 17 C 1.37875 * 119.99951 * 179.97438 * 15 13 12 18 18 N 1.31519 * 120.00142 * 180.02562 * 17 15 13 19 19 Si 1.86803 * 120.00103 * 359.97438 * 17 15 13 20 20 H 1.48493 * 109.46955 * 90.00321 * 19 17 15 21 21 H 1.48498 * 109.46958 * 210.00381 * 19 17 15 22 22 H 1.48494 * 109.46857 * 330.00502 * 19 17 15 23 23 O 1.42200 * 110.36802 * 142.38523 * 9 8 7 24 24 H 1.09000 * 109.46837 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47282 * 60.00495 * 1 2 3 26 26 H 1.08997 * 109.47112 * 300.00290 * 1 2 3 27 27 H 1.09004 * 109.47363 * 119.99326 * 2 1 3 28 28 H 1.08999 * 109.47341 * 53.82276 * 3 2 1 29 29 H 1.09006 * 109.47180 * 173.82301 * 3 2 1 30 30 H 1.09001 * 109.46743 * 293.82125 * 3 2 1 31 31 H 1.09004 * 110.36514 * 336.35499 * 6 4 2 32 32 H 1.09002 * 110.37018 * 98.68339 * 6 4 2 33 33 H 1.08999 * 110.39134 * 201.22246 * 8 7 6 34 34 H 1.09000 * 110.39446 * 78.83076 * 8 7 6 35 35 H 1.08996 * 109.51087 * 53.40689 * 10 9 8 36 36 H 1.09003 * 109.51228 * 173.55856 * 10 9 8 37 37 H 1.08999 * 109.55586 * 184.14758 * 11 10 9 38 38 H 1.09000 * 109.64319 * 63.88863 * 11 10 9 39 39 H 1.08998 * 109.50129 * 297.54171 * 12 11 10 40 40 H 1.08999 * 109.50205 * 177.42373 * 12 11 10 41 41 H 0.96998 * 120.00041 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2491 5 1 1.7440 -0.1817 -2.1488 6 6 1.5132 -2.1742 -1.2899 7 8 2.6131 -2.9491 -1.8227 8 6 3.8020 -2.4032 -1.2080 9 6 3.5708 -0.8809 -1.1940 10 6 4.2113 -0.2403 -2.4206 11 6 5.7346 -0.3814 -2.3260 12 6 6.2106 0.2364 -1.0076 13 6 5.5000 -0.4540 0.1594 14 1 5.7612 -1.5122 0.1693 15 6 5.9290 0.1818 1.4566 16 1 6.6386 0.9959 1.4503 17 6 5.4165 -0.2767 2.6516 18 7 5.7905 0.2784 3.7837 19 14 4.1898 -1.6855 2.6627 20 1 4.9183 -2.9753 2.7659 21 1 3.2772 -1.5381 3.8249 22 1 3.3989 -1.6629 1.4062 23 8 4.0853 -0.3132 0.0040 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5137 0.8901 28 1 1.5891 1.9873 0.8295 29 1 3.1244 1.4446 0.1106 30 1 1.7697 1.9234 -0.9401 31 1 1.2615 -2.5147 -0.2854 32 1 0.6443 -2.2445 -1.9441 33 1 4.6829 -2.6481 -1.8014 34 1 3.9112 -2.7802 -0.1911 35 1 3.8544 -0.7407 -3.3208 36 1 3.9452 0.8160 -2.4606 37 1 6.2018 0.1385 -3.1623 38 1 6.0074 -1.4364 -2.3540 39 1 5.9754 1.3006 -0.9987 40 1 7.2876 0.1002 -0.9099 41 1 5.4296 -0.0439 4.6244 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699501269.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:43 Heat of formation + Delta-G solvation = -120.028012 kcal Electronic energy + Delta-G solvation = -21467.314723 eV Core-core repulsion = 18539.058290 eV Total energy + Delta-G solvation = -2928.256433 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.78187 -38.67004 -36.58368 -34.87046 -34.29508 -32.49061 -29.95050 -28.75301 -27.88520 -26.86407 -24.25444 -23.79381 -22.50588 -20.61616 -20.02889 -18.98159 -17.78864 -17.42227 -16.65405 -16.43118 -15.94932 -15.42262 -15.12264 -15.07081 -14.75917 -14.59440 -14.23037 -13.92354 -13.62029 -13.20484 -13.04726 -12.95807 -12.91944 -12.64074 -12.35739 -12.33360 -12.03264 -11.81680 -11.73987 -11.60151 -11.40222 -11.25586 -11.09978 -10.91447 -10.65310 -10.46198 -9.64329 -8.33943 -6.45041 1.34355 1.38971 1.62328 2.40442 2.73336 3.07426 3.44705 3.67127 3.75457 3.86110 4.08043 4.11373 4.21188 4.23963 4.32359 4.46268 4.46759 4.53950 4.61137 4.70993 4.74719 4.85163 4.88717 4.91317 4.98457 5.02736 5.07419 5.12932 5.14258 5.20961 5.26334 5.28587 5.40361 5.56771 5.59270 5.63635 5.75427 5.87098 6.27140 6.59464 6.95250 7.31540 8.79782 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.018026 B = 0.011861 C = 0.009794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.906239 B = 2360.035637 C = 2858.201310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 C -0.142 4.142 4 C -0.097 4.097 5 H 0.106 0.894 6 C 0.047 3.953 7 O -0.385 6.385 8 C 0.018 3.982 9 C 0.075 3.925 10 C -0.125 4.125 11 C -0.118 4.118 12 C -0.130 4.130 13 C 0.186 3.814 14 H 0.010 0.990 15 C -0.518 4.518 16 H 0.039 0.961 17 C 0.033 3.967 18 N -0.941 5.941 19 Si 0.917 3.083 20 H -0.290 1.290 21 H -0.302 1.302 22 H -0.183 1.183 23 O -0.357 6.357 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.038 0.962 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.119 0.881 33 H 0.101 0.899 34 H 0.045 0.955 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.058 0.942 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.973 -3.286 -13.886 17.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.098 4.098 3 C -0.200 4.200 4 C -0.115 4.115 5 H 0.124 0.876 6 C -0.029 4.029 7 O -0.304 6.304 8 C -0.059 4.059 9 C 0.035 3.965 10 C -0.162 4.162 11 C -0.155 4.155 12 C -0.168 4.168 13 C 0.131 3.869 14 H 0.028 0.972 15 C -0.555 4.555 16 H 0.057 0.943 17 C -0.166 4.166 18 N -0.580 5.580 19 Si 0.742 3.258 20 H -0.217 1.217 21 H -0.229 1.229 22 H -0.105 1.105 23 O -0.277 6.277 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.137 0.863 33 H 0.119 0.881 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.119 -3.355 -13.751 17.399 hybrid contribution 0.335 -0.253 1.128 1.203 sum -9.785 -3.609 -12.623 16.374 Atomic orbital electron populations 1.21886 0.93826 1.02120 1.02282 1.20904 0.95811 0.96380 0.96711 1.21840 1.02406 0.95253 1.00458 1.22578 0.92059 0.96872 1.00033 0.87634 1.23754 0.90781 0.88939 0.99465 1.89091 1.16202 1.58120 1.66977 1.24152 0.89557 0.94286 0.97910 1.22401 0.94653 0.91618 0.87845 1.21966 0.95555 1.01520 0.97192 1.21684 0.95676 1.01075 0.97073 1.21948 0.99826 0.99917 0.95145 1.19894 0.79486 0.94332 0.93235 0.97219 1.21173 1.24990 1.19174 0.90139 0.94251 1.25818 0.96999 0.98973 0.94837 1.70063 1.45568 1.43728 0.98686 0.86464 0.80549 0.78165 0.80575 1.21656 1.22912 1.10507 1.88323 1.23548 1.78422 1.37450 0.91993 0.91164 0.93048 0.93248 0.94290 0.92268 0.92267 0.92891 0.86261 0.88074 0.93688 0.89490 0.91086 0.89955 0.91688 0.93064 0.92354 0.92657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.95 71.98 0.64 -2.63 16 2 C -0.08 -2.38 1.91 -10.79 -0.02 -2.41 16 3 C -0.14 -4.60 8.84 71.98 0.64 -3.96 16 4 C -0.10 -2.65 2.31 -9.91 -0.02 -2.68 16 5 H 0.11 2.44 7.71 -2.39 -0.02 2.42 16 6 C 0.05 1.21 6.13 72.53 0.44 1.65 16 7 O -0.38 -11.76 11.66 -148.98 -1.74 -13.49 16 8 C 0.02 0.59 5.52 72.32 0.40 0.99 16 9 C 0.08 2.43 0.75 -10.29 -0.01 2.42 16 10 C -0.12 -3.43 4.66 30.52 0.14 -3.29 16 11 C -0.12 -3.36 5.81 30.75 0.18 -3.18 16 12 C -0.13 -4.92 5.34 30.68 0.16 -4.76 16 13 C 0.19 8.37 1.75 29.87 0.05 8.42 16 14 H 0.01 0.46 6.60 -2.39 -0.02 0.45 16 15 C -0.52 -29.33 9.38 25.60 0.24 -29.09 16 16 H 0.04 2.47 7.99 -2.91 -0.02 2.44 16 17 C 0.03 1.94 5.47 84.65 0.46 2.40 16 18 N -0.94 -59.28 13.96 21.45 0.30 -58.98 16 19 Si 0.92 44.59 26.16 68.60 1.79 46.38 16 20 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 21 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 22 H -0.18 -8.00 2.60 99.48 0.26 -7.74 16 23 O -0.36 -14.59 2.88 -148.98 -0.43 -15.02 16 24 H 0.06 1.25 7.03 -2.39 -0.02 1.23 16 25 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.05 1.82 5.94 -2.38 -0.01 1.81 16 28 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.06 2.35 5.77 -2.38 -0.01 2.34 16 30 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.05 1.44 7.56 -2.39 -0.02 1.42 16 32 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.10 3.03 6.19 -2.39 -0.01 3.02 16 34 H 0.04 1.67 6.10 -2.39 -0.01 1.65 16 35 H 0.09 2.02 8.14 -2.39 -0.02 2.01 16 36 H 0.07 1.94 8.14 -2.39 -0.02 1.93 16 37 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.06 1.77 6.55 -2.39 -0.02 1.75 16 39 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -65.15 295.47 3.78 -61.37 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.54 Total: 15.85 kcal Atomic # 6 Polarization: -39.42 SS G_CDS: 3.31 Total: -36.10 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: 0.30 Total: -58.98 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -2.17 Total: -28.51 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.79 Total: 46.38 kcal Total: -65.15 3.78 -61.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699501269.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.661 kcal (2) G-P(sol) polarization free energy of solvation -65.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds