Wall clock time and date at job start Mon Mar 30 2020 07:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46915 * 2 1 4 4 C 1.53007 * 109.46862 * 119.99589 * 2 1 3 5 5 H 1.09002 * 110.48122 * 312.14245 * 4 2 1 6 6 C 1.54594 * 110.54231 * 189.45541 * 4 2 1 7 7 O 1.44471 * 104.82241 * 217.37467 * 6 4 2 8 8 C 1.44541 * 105.35902 * 40.17926 * 7 6 4 9 9 C 1.53981 * 104.70457 * 319.96378 * 8 7 6 10 10 C 1.52475 * 110.21844 * 142.02591 * 9 8 7 11 11 C 1.53276 * 109.25536 * 66.70923 * 10 9 8 12 12 C 1.53193 * 108.96116 * 55.97543 * 11 10 9 13 13 C 1.53099 * 109.22781 * 302.46908 * 12 11 10 14 14 H 1.08997 * 109.50283 * 298.17421 * 13 12 11 15 15 C 1.50699 * 109.48483 * 178.12418 * 13 12 11 16 16 H 1.07996 * 120.00403 * 0.09749 * 15 13 12 17 17 C 1.37877 * 119.99714 * 180.10186 * 15 13 12 18 18 N 1.31508 * 120.00035 * 180.02562 * 17 15 13 19 19 Si 1.86799 * 120.00036 * 359.97438 * 17 15 13 20 20 H 1.48502 * 109.47161 * 90.00300 * 19 17 15 21 21 H 1.48496 * 109.47254 * 210.00192 * 19 17 15 22 22 H 1.48498 * 109.47420 * 330.00376 * 19 17 15 23 23 O 1.42204 * 110.37891 * 264.99059 * 9 8 7 24 24 H 1.08993 * 109.46910 * 203.28537 * 1 2 3 25 25 H 1.08996 * 109.47315 * 323.28953 * 1 2 3 26 26 H 1.08995 * 109.46938 * 83.28787 * 1 2 3 27 27 H 1.08992 * 109.47370 * 239.99462 * 2 1 3 28 28 H 1.08997 * 109.46677 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.46739 * 299.99250 * 3 2 1 30 30 H 1.08994 * 109.47165 * 59.99950 * 3 2 1 31 31 H 1.09001 * 110.36899 * 98.53210 * 6 4 2 32 32 H 1.09002 * 110.36986 * 336.20989 * 6 4 2 33 33 H 1.09003 * 110.39431 * 78.76768 * 8 7 6 34 34 H 1.08992 * 110.39462 * 201.15643 * 8 7 6 35 35 H 1.09005 * 109.50607 * 186.64506 * 10 9 8 36 36 H 1.08994 * 109.50857 * 306.77207 * 10 9 8 37 37 H 1.08996 * 109.55472 * 296.12373 * 11 10 9 38 38 H 1.09004 * 109.63808 * 175.86305 * 11 10 9 39 39 H 1.09004 * 109.50712 * 182.54739 * 12 11 10 40 40 H 1.09000 * 109.51586 * 62.39850 * 12 11 10 41 41 H 0.97002 * 120.00781 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 1.5211 -0.3594 2.1371 6 6 3.5671 -0.5330 1.3990 7 8 4.0477 -1.7984 1.9041 8 6 3.2991 -2.8059 1.1873 9 6 1.8675 -2.2449 1.1058 10 6 1.2468 -2.5788 -0.2463 11 6 1.0482 -4.0951 -0.3506 12 6 0.1998 -4.5687 0.8337 13 6 0.8926 -4.1730 2.1404 14 1 1.8631 -4.6654 2.2012 15 6 0.0403 -4.5955 3.3092 16 1 -0.9005 -5.0974 3.1380 17 6 0.4616 -4.3411 4.5971 18 7 -0.2819 -4.7102 5.6171 19 14 2.0891 -3.4735 4.8932 20 1 1.8663 -2.0061 4.9414 21 1 2.6654 -3.9292 6.1838 22 1 3.0296 -3.7954 3.7901 23 8 1.0744 -2.7549 2.1704 24 1 -0.3633 -0.9439 0.4062 25 1 -0.3634 0.8238 0.6143 26 1 -0.3633 0.1201 -1.0206 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9562 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.7832 0.2656 2.1087 32 1 4.0191 -0.3144 0.4315 33 1 3.7101 -2.9447 0.1873 34 1 3.3074 -3.7474 1.7362 35 1 0.2828 -2.0783 -0.3379 36 1 1.9093 -2.2427 -1.0438 37 1 2.0177 -4.5925 -0.3271 38 1 0.5379 -4.3343 -1.2837 39 1 0.0908 -5.6525 0.7931 40 1 -0.7838 -4.1011 0.7871 41 1 0.0146 -4.5316 6.5233 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699501271.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:46 Heat of formation + Delta-G solvation = -94.706104 kcal Electronic energy + Delta-G solvation = -21230.819392 eV Core-core repulsion = 18303.660999 eV Total energy + Delta-G solvation = -2927.158393 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.58849 -37.20760 -35.81322 -32.96346 -32.65796 -30.81807 -28.86731 -27.27443 -27.11947 -25.07210 -23.00904 -22.11261 -21.53644 -19.44958 -18.43916 -16.94499 -16.49068 -15.79875 -15.41265 -15.04073 -14.34055 -14.22319 -14.08952 -13.78952 -13.21447 -12.97682 -12.67706 -12.40923 -12.17953 -12.14424 -11.94833 -11.76704 -11.39056 -11.35116 -11.01948 -10.75225 -10.63731 -10.45463 -10.28322 -10.17751 -9.95668 -9.75880 -9.63326 -9.27465 -9.02373 -8.56525 -8.24287 -6.09868 -4.19548 3.50696 3.54546 3.68590 4.24748 4.39209 4.55746 4.78812 4.97891 5.03931 5.11044 5.18677 5.30288 5.38620 5.42958 5.46090 5.60201 5.68398 5.69783 5.71854 5.77487 5.88279 5.91973 5.94528 6.00497 6.12506 6.14388 6.19563 6.20548 6.31382 6.43439 6.50313 6.59791 6.64431 6.67013 6.75095 7.08154 7.18809 7.63797 8.42224 8.53493 8.91123 9.52973 10.99347 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.021827 B = 0.009692 C = 0.008519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.534877 B = 2888.205544 C = 3285.884191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.088 4.088 3 C -0.149 4.149 4 C -0.109 4.109 5 H 0.095 0.905 6 C 0.049 3.951 7 O -0.372 6.372 8 C 0.016 3.984 9 C 0.090 3.910 10 C -0.149 4.149 11 C -0.126 4.126 12 C -0.134 4.134 13 C 0.179 3.821 14 H 0.019 0.981 15 C -0.514 4.514 16 H 0.080 0.920 17 C 0.083 3.917 18 N -0.891 5.891 19 Si 0.908 3.092 20 H -0.276 1.276 21 H -0.306 1.306 22 H -0.261 1.261 23 O -0.360 6.360 24 H 0.077 0.923 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.398 8.798 -13.378 16.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.106 4.106 3 C -0.207 4.207 4 C -0.128 4.128 5 H 0.113 0.887 6 C -0.028 4.028 7 O -0.290 6.290 8 C -0.060 4.060 9 C 0.049 3.951 10 C -0.186 4.186 11 C -0.164 4.164 12 C -0.172 4.172 13 C 0.124 3.876 14 H 0.037 0.963 15 C -0.551 4.551 16 H 0.098 0.902 17 C -0.122 4.122 18 N -0.528 5.528 19 Si 0.738 3.262 20 H -0.202 1.202 21 H -0.234 1.234 22 H -0.186 1.186 23 O -0.280 6.280 24 H 0.096 0.904 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.094 0.906 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.105 0.895 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.119 0.881 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.457 8.864 -12.889 16.567 hybrid contribution 0.715 0.334 -0.053 0.791 sum 6.172 9.197 -12.942 17.035 Atomic orbital electron populations 1.22125 0.94768 1.03175 1.01244 1.21211 0.96407 0.95539 0.97454 1.21936 1.00875 0.96120 1.01735 1.22575 0.96235 0.94232 0.99748 0.88686 1.23522 0.92762 0.87758 0.98713 1.89148 1.61809 1.15143 1.62939 1.24171 0.91577 0.93871 0.96415 1.22110 0.90744 0.92673 0.89607 1.22486 1.02570 0.97082 0.96442 1.21727 1.00214 0.95480 0.98950 1.22059 0.99380 1.00694 0.95032 1.20383 0.95250 0.78000 0.93955 0.96312 1.20907 1.07995 1.37712 0.88463 0.90166 1.25088 0.97744 0.93481 0.95913 1.69932 1.38179 1.45795 0.98917 0.86355 0.83215 0.80350 0.76268 1.20219 1.23405 1.18627 1.88195 1.69036 1.26029 1.44788 0.90397 0.92800 0.93055 0.90555 0.92678 0.92763 0.92560 0.89541 0.92513 0.92579 0.88086 0.89228 0.91917 0.92711 0.92553 0.91868 0.91897 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 8.32 37.16 0.31 -1.65 16 2 C -0.09 -1.08 1.97 -90.61 -0.18 -1.26 16 3 C -0.15 -1.54 8.69 37.16 0.32 -1.21 16 4 C -0.11 -1.74 2.47 -89.25 -0.22 -1.96 16 5 H 0.09 1.72 7.96 -51.93 -0.41 1.31 16 6 C 0.05 0.75 6.03 38.00 0.23 0.98 16 7 O -0.37 -7.19 11.65 -35.23 -0.41 -7.60 16 8 C 0.02 0.30 5.79 37.67 0.22 0.52 16 9 C 0.09 1.64 0.80 -89.85 -0.07 1.57 16 10 C -0.15 -2.26 3.47 -26.86 -0.09 -2.36 16 11 C -0.13 -2.00 5.83 -26.49 -0.15 -2.15 16 12 C -0.13 -2.64 5.34 -26.58 -0.14 -2.78 16 13 C 0.18 4.26 1.73 -27.83 -0.05 4.22 16 14 H 0.02 0.47 5.34 -51.93 -0.28 0.19 16 15 C -0.51 -14.70 9.38 -34.44 -0.32 -15.02 16 16 H 0.08 2.43 7.99 -52.49 -0.42 2.02 16 17 C 0.08 2.45 5.47 -17.82 -0.10 2.35 16 18 N -0.89 -27.65 13.96 55.43 0.77 -26.87 16 19 Si 0.91 24.10 26.18 -169.99 -4.45 19.65 16 20 H -0.28 -7.46 7.11 56.52 0.40 -7.06 16 21 H -0.31 -8.07 7.11 56.52 0.40 -7.66 16 22 H -0.26 -6.71 5.28 56.52 0.30 -6.41 16 23 O -0.36 -8.37 7.51 -35.23 -0.26 -8.64 16 24 H 0.08 1.17 5.55 -51.93 -0.29 0.88 16 25 H 0.05 0.66 7.92 -51.93 -0.41 0.25 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.08 0.89 5.90 -51.93 -0.31 0.58 16 28 H 0.05 0.53 6.54 -51.93 -0.34 0.19 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 31 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.06 0.72 7.06 -51.93 -0.37 0.35 16 33 H 0.06 0.87 7.76 -51.93 -0.40 0.47 16 34 H 0.10 2.08 4.87 -51.93 -0.25 1.83 16 35 H 0.09 1.34 4.36 -51.93 -0.23 1.11 16 36 H 0.06 0.81 6.52 -51.93 -0.34 0.47 16 37 H 0.05 0.84 7.59 -51.93 -0.39 0.45 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.27 7.75 8.31 -40.82 -0.34 7.42 16 LS Contribution 294.73 15.07 4.44 4.44 Total: -1.00 -31.51 294.73 -6.79 -38.30 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -6.63 Total: -0.52 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -0.25 Total: -18.77 kcal Atomic # 7 Polarization: -27.65 SS G_CDS: 0.77 Total: -26.87 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.68 Total: -16.24 kcal Atomic # 14 Polarization: 24.10 SS G_CDS: -4.45 Total: 19.65 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.51 -6.79 -38.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699501271.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.404 kcal (2) G-P(sol) polarization free energy of solvation -31.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds