Wall clock time and date at job start Mon Mar 30 2020 07:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46915 * 2 1 4 4 C 1.53007 * 109.46862 * 119.99589 * 2 1 3 5 5 H 1.09002 * 110.48122 * 312.14245 * 4 2 1 6 6 C 1.54594 * 110.54231 * 189.45541 * 4 2 1 7 7 O 1.44471 * 104.82241 * 217.37467 * 6 4 2 8 8 C 1.44541 * 105.35902 * 40.17926 * 7 6 4 9 9 C 1.53981 * 104.70457 * 319.96378 * 8 7 6 10 10 C 1.52475 * 110.21844 * 142.02591 * 9 8 7 11 11 C 1.53276 * 109.25536 * 66.70923 * 10 9 8 12 12 C 1.53193 * 108.96116 * 55.97543 * 11 10 9 13 13 C 1.53099 * 109.22781 * 302.46908 * 12 11 10 14 14 H 1.08997 * 109.50283 * 298.17421 * 13 12 11 15 15 C 1.50699 * 109.48483 * 178.12418 * 13 12 11 16 16 H 1.07996 * 120.00403 * 0.09749 * 15 13 12 17 17 C 1.37877 * 119.99714 * 180.10186 * 15 13 12 18 18 N 1.31508 * 120.00035 * 180.02562 * 17 15 13 19 19 Si 1.86799 * 120.00036 * 359.97438 * 17 15 13 20 20 H 1.48502 * 109.47161 * 90.00300 * 19 17 15 21 21 H 1.48496 * 109.47254 * 210.00192 * 19 17 15 22 22 H 1.48498 * 109.47420 * 330.00376 * 19 17 15 23 23 O 1.42204 * 110.37891 * 264.99059 * 9 8 7 24 24 H 1.08993 * 109.46910 * 203.28537 * 1 2 3 25 25 H 1.08996 * 109.47315 * 323.28953 * 1 2 3 26 26 H 1.08995 * 109.46938 * 83.28787 * 1 2 3 27 27 H 1.08992 * 109.47370 * 239.99462 * 2 1 3 28 28 H 1.08997 * 109.46677 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.46739 * 299.99250 * 3 2 1 30 30 H 1.08994 * 109.47165 * 59.99950 * 3 2 1 31 31 H 1.09001 * 110.36899 * 98.53210 * 6 4 2 32 32 H 1.09002 * 110.36986 * 336.20989 * 6 4 2 33 33 H 1.09003 * 110.39431 * 78.76768 * 8 7 6 34 34 H 1.08992 * 110.39462 * 201.15643 * 8 7 6 35 35 H 1.09005 * 109.50607 * 186.64506 * 10 9 8 36 36 H 1.08994 * 109.50857 * 306.77207 * 10 9 8 37 37 H 1.08996 * 109.55472 * 296.12373 * 11 10 9 38 38 H 1.09004 * 109.63808 * 175.86305 * 11 10 9 39 39 H 1.09004 * 109.50712 * 182.54739 * 12 11 10 40 40 H 1.09000 * 109.51586 * 62.39850 * 12 11 10 41 41 H 0.97002 * 120.00781 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 1.5211 -0.3594 2.1371 6 6 3.5671 -0.5330 1.3990 7 8 4.0477 -1.7984 1.9041 8 6 3.2991 -2.8059 1.1873 9 6 1.8675 -2.2449 1.1058 10 6 1.2468 -2.5788 -0.2463 11 6 1.0482 -4.0951 -0.3506 12 6 0.1998 -4.5687 0.8337 13 6 0.8926 -4.1730 2.1404 14 1 1.8631 -4.6654 2.2012 15 6 0.0403 -4.5955 3.3092 16 1 -0.9005 -5.0974 3.1380 17 6 0.4616 -4.3411 4.5971 18 7 -0.2819 -4.7102 5.6171 19 14 2.0891 -3.4735 4.8932 20 1 1.8663 -2.0061 4.9414 21 1 2.6654 -3.9292 6.1838 22 1 3.0296 -3.7954 3.7901 23 8 1.0744 -2.7549 2.1704 24 1 -0.3633 -0.9439 0.4062 25 1 -0.3634 0.8238 0.6143 26 1 -0.3633 0.1201 -1.0206 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9562 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.7832 0.2656 2.1087 32 1 4.0191 -0.3144 0.4315 33 1 3.7101 -2.9447 0.1873 34 1 3.3074 -3.7474 1.7362 35 1 0.2828 -2.0783 -0.3379 36 1 1.9093 -2.2427 -1.0438 37 1 2.0177 -4.5925 -0.3271 38 1 0.5379 -4.3343 -1.2837 39 1 0.0908 -5.6525 0.7931 40 1 -0.7838 -4.1011 0.7871 41 1 0.0146 -4.5316 6.5233 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699501271.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:45 Heat of formation + Delta-G solvation = -115.955275 kcal Electronic energy + Delta-G solvation = -21231.740825 eV Core-core repulsion = 18303.660999 eV Total energy + Delta-G solvation = -2928.079826 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.94899 -38.73892 -36.95490 -34.85459 -34.38067 -32.42533 -30.08407 -28.93806 -28.11897 -26.68252 -24.23727 -23.75710 -22.83601 -20.83666 -19.80120 -19.01836 -17.98367 -17.25622 -16.69034 -16.62237 -16.07366 -15.63246 -15.40608 -15.09579 -14.73174 -14.27337 -14.19395 -14.06527 -13.54430 -13.34530 -13.20710 -13.01482 -12.86941 -12.68586 -12.60823 -12.38481 -12.04132 -11.91533 -11.71439 -11.55078 -11.40040 -11.33527 -11.12420 -10.94945 -10.73119 -10.54069 -9.88365 -8.40937 -6.52135 1.32654 1.37798 1.51259 2.31420 2.72223 2.98930 3.30649 3.58893 3.80926 3.90602 3.96281 4.08224 4.10903 4.21357 4.32226 4.35666 4.41045 4.45920 4.55558 4.62336 4.72264 4.77774 4.84628 4.84958 4.94550 5.01666 5.05314 5.07929 5.12398 5.17655 5.22707 5.27258 5.32905 5.48303 5.54554 5.57790 5.62974 5.80883 6.19141 6.53130 6.89904 7.24528 8.72494 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.021827 B = 0.009692 C = 0.008519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.534877 B = 2888.205544 C = 3285.884191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.079 4.079 3 C -0.147 4.147 4 C -0.109 4.109 5 H 0.061 0.939 6 C 0.047 3.953 7 O -0.403 6.403 8 C 0.016 3.984 9 C 0.075 3.925 10 C -0.144 4.144 11 C -0.119 4.119 12 C -0.131 4.131 13 C 0.184 3.816 14 H 0.014 0.986 15 C -0.522 4.522 16 H 0.047 0.953 17 C 0.033 3.967 18 N -0.936 5.936 19 Si 0.966 3.034 20 H -0.286 1.286 21 H -0.303 1.303 22 H -0.250 1.250 23 O -0.389 6.389 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.075 0.925 27 H 0.097 0.903 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.063 0.937 38 H 0.088 0.912 39 H 0.061 0.939 40 H 0.051 0.949 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.181 10.482 -16.786 21.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.098 4.098 3 C -0.204 4.204 4 C -0.127 4.127 5 H 0.080 0.920 6 C -0.029 4.029 7 O -0.323 6.323 8 C -0.061 4.061 9 C 0.035 3.965 10 C -0.180 4.180 11 C -0.157 4.157 12 C -0.169 4.169 13 C 0.128 3.872 14 H 0.032 0.968 15 C -0.559 4.559 16 H 0.065 0.935 17 C -0.167 4.167 18 N -0.575 5.575 19 Si 0.794 3.206 20 H -0.213 1.213 21 H -0.231 1.231 22 H -0.174 1.174 23 O -0.310 6.310 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.094 0.906 27 H 0.115 0.885 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.119 0.881 37 H 0.082 0.918 38 H 0.106 0.894 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.244 10.549 -16.317 20.736 hybrid contribution 0.107 -0.159 0.984 1.003 sum 7.350 10.390 -15.332 19.926 Atomic orbital electron populations 1.22108 0.95245 1.01441 1.02435 1.21208 0.95916 0.96642 0.95998 1.21919 1.01603 0.94560 1.02321 1.22611 0.96849 0.92880 1.00405 0.92037 1.23776 0.92041 0.86388 1.00670 1.89106 1.62269 1.16771 1.64121 1.24196 0.91720 0.92567 0.97613 1.22551 0.90322 0.93946 0.89714 1.22506 1.03466 0.96640 0.95432 1.21707 1.00031 0.95915 0.98016 1.21966 0.99273 1.00655 0.95030 1.20094 0.94330 0.78701 0.94033 0.96811 1.21275 1.07168 1.37005 0.90443 0.93451 1.25795 1.00524 0.94403 0.95963 1.70035 1.40002 1.48069 0.99407 0.85453 0.80275 0.78473 0.76405 1.21290 1.23116 1.17439 1.88039 1.70472 1.24872 1.47617 0.93221 0.93238 0.90601 0.88536 0.91501 0.90846 0.93412 0.88815 0.88890 0.88868 0.91046 0.88867 0.88061 0.91839 0.89355 0.91982 0.93061 0.92314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.49 8.32 71.98 0.60 -2.89 16 2 C -0.08 -1.65 1.97 -10.79 -0.02 -1.67 16 3 C -0.15 -2.40 8.69 71.98 0.63 -1.78 16 4 C -0.11 -3.22 2.47 -9.91 -0.02 -3.25 16 5 H 0.06 2.22 7.96 -2.39 -0.02 2.21 16 6 C 0.05 1.28 6.03 72.52 0.44 1.72 16 7 O -0.40 -14.67 11.65 -148.98 -1.74 -16.40 16 8 C 0.02 0.53 5.79 72.31 0.42 0.95 16 9 C 0.07 2.57 0.80 -10.29 -0.01 2.56 16 10 C -0.14 -3.81 3.47 30.51 0.11 -3.70 16 11 C -0.12 -3.36 5.83 30.75 0.18 -3.18 16 12 C -0.13 -5.11 5.34 30.69 0.16 -4.95 16 13 C 0.18 8.86 1.73 29.88 0.05 8.92 16 14 H 0.01 0.70 5.34 -2.39 -0.01 0.69 16 15 C -0.52 -31.07 9.38 25.60 0.24 -30.83 16 16 H 0.05 3.04 7.99 -2.91 -0.02 3.02 16 17 C 0.03 2.05 5.47 84.66 0.46 2.51 16 18 N -0.94 -60.48 13.96 21.45 0.30 -60.18 16 19 Si 0.97 51.52 26.18 68.60 1.80 53.31 16 20 H -0.29 -15.59 7.11 99.48 0.71 -14.88 16 21 H -0.30 -15.82 7.11 99.48 0.71 -15.11 16 22 H -0.25 -12.75 5.28 99.48 0.53 -12.22 16 23 O -0.39 -18.13 7.51 -148.98 -1.12 -19.25 16 24 H 0.05 1.41 5.55 -2.39 -0.01 1.40 16 25 H 0.05 1.13 7.92 -2.39 -0.02 1.11 16 26 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.10 1.65 5.90 -2.39 -0.01 1.64 16 28 H 0.07 0.95 6.54 -2.39 -0.02 0.93 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.05 0.86 8.12 -2.39 -0.02 0.84 16 31 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.09 1.87 7.06 -2.39 -0.02 1.85 16 33 H 0.09 2.46 7.76 -2.39 -0.02 2.44 16 34 H 0.07 2.86 4.87 -2.39 -0.01 2.84 16 35 H 0.09 2.47 4.36 -2.38 -0.01 2.46 16 36 H 0.10 1.97 6.52 -2.39 -0.02 1.95 16 37 H 0.06 1.70 7.59 -2.39 -0.02 1.68 16 38 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 39 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 40 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.27 16.26 8.31 -92.71 -0.77 15.49 16 Total: -1.00 -72.09 294.73 3.29 -68.80 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: 0.82 Total: 9.31 kcal Atomic # 6 Polarization: -38.82 SS G_CDS: 3.23 Total: -35.59 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: 0.30 Total: -60.18 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -2.86 Total: -35.66 kcal Atomic # 14 Polarization: 51.52 SS G_CDS: 1.80 Total: 53.31 kcal Total: -72.09 3.29 -68.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699501271.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.157 kcal (2) G-P(sol) polarization free energy of solvation -72.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds