Wall clock time and date at job start Mon Mar 30 2020 07:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47274 * 2 1 4 4 C 1.53002 * 109.47249 * 240.00284 * 2 1 3 5 5 H 1.09004 * 110.50076 * 64.10864 * 4 2 1 6 6 C 1.54678 * 110.56590 * 301.37234 * 4 2 1 7 7 O 1.44738 * 104.71781 * 217.69618 * 6 4 2 8 8 C 1.44621 * 105.51274 * 39.80209 * 7 6 4 9 9 C 1.53677 * 104.63229 * 320.34537 * 8 7 6 10 10 C 1.53302 * 110.73099 * 263.94397 * 9 8 7 11 11 C 1.55022 * 103.81554 * 239.54893 * 10 9 8 12 12 C 1.55066 * 102.11355 * 20.86291 * 11 10 9 13 13 C 1.52997 * 110.58916 * 82.18861 * 12 11 10 14 14 C 1.50703 * 110.58686 * 204.95232 * 12 11 10 15 15 H 1.07996 * 119.99955 * 0.02562 * 14 12 11 16 16 C 1.37877 * 120.00088 * 179.97438 * 14 12 11 17 17 N 1.31517 * 119.99793 * 0.02562 * 16 14 12 18 18 Si 1.86797 * 120.00259 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.46997 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47408 * 119.99939 * 18 16 14 21 21 H 1.48501 * 109.47164 * 240.00380 * 18 16 14 22 22 O 1.42802 * 111.10978 * 143.54714 * 9 8 7 23 23 H 1.08999 * 109.46698 * 299.99775 * 1 2 3 24 24 H 1.08995 * 109.46862 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47079 * 59.99523 * 1 2 3 26 26 H 1.08995 * 109.47476 * 120.00165 * 2 1 3 27 27 H 1.09007 * 109.46735 * 65.78248 * 3 2 1 28 28 H 1.08998 * 109.47112 * 185.78003 * 3 2 1 29 29 H 1.09001 * 109.47339 * 305.78778 * 3 2 1 30 30 H 1.09005 * 110.36317 * 336.42728 * 6 4 2 31 31 H 1.08995 * 110.37035 * 98.74938 * 6 4 2 32 32 H 1.09003 * 110.40235 * 201.56435 * 8 7 6 33 33 H 1.08995 * 110.50633 * 79.18525 * 8 7 6 34 34 H 1.08996 * 110.55515 * 358.13374 * 10 9 8 35 35 H 1.09000 * 110.55222 * 120.97093 * 10 9 8 36 36 H 1.09002 * 110.87208 * 139.01684 * 11 10 9 37 37 H 1.09001 * 110.87633 * 262.70780 * 11 10 9 38 38 H 1.08998 * 109.47147 * 60.00130 * 13 12 11 39 39 H 1.09005 * 109.47208 * 179.97438 * 13 12 11 40 40 H 1.08998 * 109.47248 * 299.99888 * 13 12 11 41 41 H 0.97000 * 120.00203 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.7470 -0.1800 -2.1489 6 6 1.5104 -2.1738 -1.2924 7 8 2.6102 -2.9506 -1.8233 8 6 3.8007 -2.4050 -1.2097 9 6 3.5671 -0.8862 -1.1919 10 6 4.2306 -0.2208 -2.4031 11 6 5.2323 0.7804 -1.7728 12 6 5.4181 0.2007 -0.3467 13 6 6.4416 -0.9365 -0.3573 14 6 5.8399 1.2822 0.6143 15 1 5.9692 2.2955 0.2638 16 6 6.0596 0.9783 1.9411 17 7 5.9015 -0.2556 2.3679 18 14 6.5817 2.3191 3.1323 19 1 6.6890 3.6108 2.4077 20 1 5.5721 2.4404 4.2145 21 1 7.8998 1.9718 3.7217 22 8 4.1037 -0.2972 -0.0068 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 -0.8899 26 1 1.8934 -0.5138 0.8899 27 1 1.7637 1.9256 0.9373 28 1 3.1251 1.4442 -0.1035 29 1 1.5946 1.9855 -0.8336 30 1 1.2556 -2.5146 -0.2888 31 1 0.6428 -2.2420 -1.9487 32 1 4.6805 -2.6471 -1.8060 33 1 3.9148 -2.7839 -0.1942 34 1 4.7571 -0.9609 -3.0056 35 1 3.4895 0.3063 -3.0039 36 1 6.1762 0.7806 -2.3180 37 1 4.8059 1.7828 -1.7321 38 1 7.4004 -0.5591 -0.7128 39 1 6.5583 -1.3298 0.6526 40 1 6.0957 -1.7305 -1.0191 41 1 6.0564 -0.4695 3.3013 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699502088.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:04 Heat of formation + Delta-G solvation = -98.996426 kcal Electronic energy + Delta-G solvation = -21317.749293 eV Core-core repulsion = 18390.404857 eV Total energy + Delta-G solvation = -2927.344435 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.21330 -37.17533 -35.10136 -32.90457 -31.13108 -30.12909 -28.33002 -27.36957 -26.55261 -25.16874 -22.80925 -22.36185 -20.03351 -19.71981 -18.66228 -16.67573 -15.89624 -15.45283 -14.94094 -14.57911 -14.40025 -13.80715 -13.42693 -13.22528 -13.03388 -12.64918 -12.24246 -12.09105 -11.91318 -11.67040 -11.31985 -11.21236 -11.07960 -10.88374 -10.64162 -10.55828 -10.42010 -10.31173 -10.15836 -10.03963 -9.96477 -9.74002 -9.43011 -9.11862 -9.03320 -8.53395 -7.99452 -6.02478 -4.18296 3.26191 3.35343 3.38223 4.35392 4.40010 4.85797 5.03779 5.16022 5.31443 5.46525 5.55914 5.58946 5.67742 5.70179 5.83889 5.92816 6.03818 6.10676 6.18600 6.20540 6.27840 6.32464 6.40452 6.40855 6.52755 6.55099 6.62170 6.70651 6.76900 6.81128 6.87525 7.05576 7.09100 7.18792 7.31644 7.46336 7.72147 8.10454 8.30126 8.55859 8.93418 9.52486 10.99069 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.023075 B = 0.009010 C = 0.007783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.124218 B = 3107.044718 C = 3596.706198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.070 4.070 3 C -0.151 4.151 4 C -0.108 4.108 5 H 0.077 0.923 6 C 0.051 3.949 7 O -0.387 6.387 8 C 0.035 3.965 9 C 0.075 3.925 10 C -0.138 4.138 11 C -0.143 4.143 12 C 0.228 3.772 13 C -0.157 4.157 14 C -0.515 4.515 15 H 0.063 0.937 16 C 0.081 3.919 17 N -0.860 5.860 18 Si 0.888 3.112 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.284 1.284 22 O -0.320 6.320 23 H 0.050 0.950 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.079 0.921 27 H 0.040 0.960 28 H 0.102 0.898 29 H 0.030 0.970 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.034 0.966 39 H 0.095 0.905 40 H 0.015 0.985 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.443 -1.046 -6.049 8.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.088 4.088 3 C -0.208 4.208 4 C -0.127 4.127 5 H 0.095 0.905 6 C -0.026 4.026 7 O -0.306 6.306 8 C -0.041 4.041 9 C 0.033 3.967 10 C -0.176 4.176 11 C -0.181 4.181 12 C 0.191 3.809 13 C -0.215 4.215 14 C -0.553 4.553 15 H 0.081 0.919 16 C -0.124 4.124 17 N -0.496 5.496 18 Si 0.716 3.284 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.210 1.210 22 O -0.239 6.239 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.098 0.902 27 H 0.060 0.940 28 H 0.120 0.880 29 H 0.049 0.951 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.053 0.947 39 H 0.113 0.887 40 H 0.034 0.966 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.541 -1.324 -5.831 8.862 hybrid contribution 0.333 0.773 0.595 1.031 sum -6.207 -0.551 -5.236 8.139 Atomic orbital electron populations 1.21949 0.96813 1.00772 1.01112 1.20786 0.93121 0.97457 0.97443 1.22013 1.05546 0.94015 0.99208 1.22632 0.94807 0.95856 0.99356 0.90465 1.23531 0.90306 0.90153 0.98599 1.89090 1.16339 1.57630 1.67528 1.24088 0.87653 0.93840 0.98566 1.22476 0.92803 0.92387 0.89072 1.22908 0.98830 0.98813 0.97044 1.23273 0.97464 0.98399 0.98930 1.20110 0.80772 0.90960 0.89059 1.22275 0.98019 0.97743 1.03430 1.20893 1.46691 0.94289 0.93412 0.91901 1.24997 0.93928 0.95219 0.98270 1.69924 1.46670 1.17638 1.15413 0.86606 0.78162 0.82382 0.81249 1.19688 1.20900 1.21010 1.89222 1.32215 1.74892 1.27568 0.93042 0.93349 0.93370 0.90222 0.94047 0.87955 0.95133 0.92380 0.90012 0.89485 0.91353 0.91925 0.91996 0.92288 0.91830 0.94737 0.88687 0.96587 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 8.95 37.16 0.33 -1.73 16 2 C -0.07 -1.20 1.92 -90.62 -0.17 -1.37 16 3 C -0.15 -2.78 8.90 37.16 0.33 -2.45 16 4 C -0.11 -1.82 2.32 -89.37 -0.21 -2.03 16 5 H 0.08 1.23 7.17 -51.93 -0.37 0.86 16 6 C 0.05 0.81 6.14 38.04 0.23 1.04 16 7 O -0.39 -7.05 11.66 -35.23 -0.41 -7.46 16 8 C 0.04 0.67 5.66 37.51 0.21 0.88 16 9 C 0.07 1.43 0.79 -89.75 -0.07 1.36 16 10 C -0.14 -2.49 5.97 -25.51 -0.15 -2.64 16 11 C -0.14 -2.87 5.69 -24.57 -0.14 -3.01 16 12 C 0.23 5.33 0.49 -90.68 -0.04 5.29 16 13 C -0.16 -3.63 8.37 37.16 0.31 -3.32 16 14 C -0.52 -13.41 8.08 -34.44 -0.28 -13.69 16 15 H 0.06 1.63 7.76 -52.49 -0.41 1.22 16 16 C 0.08 2.15 5.29 -17.82 -0.09 2.05 16 17 N -0.86 -23.50 11.00 55.43 0.61 -22.89 16 18 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 O -0.32 -7.37 6.43 -35.23 -0.23 -7.59 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.05 0.61 7.02 -51.93 -0.36 0.24 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.08 1.59 7.67 -51.93 -0.40 1.19 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.10 2.22 4.70 -51.93 -0.24 1.97 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.92 7.55 -51.93 -0.39 0.52 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.09 1.59 6.09 -51.93 -0.32 1.27 16 33 H 0.07 1.41 8.10 -51.93 -0.42 0.99 16 34 H 0.06 1.07 7.31 -51.93 -0.38 0.69 16 35 H 0.06 1.02 7.17 -51.93 -0.37 0.65 16 36 H 0.06 1.12 8.04 -51.93 -0.42 0.70 16 37 H 0.06 1.28 7.93 -51.93 -0.41 0.87 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 2.46 5.88 -51.93 -0.31 2.15 16 40 H 0.02 0.32 5.14 -51.93 -0.27 0.06 16 41 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 303.22 15.07 4.57 4.57 Total: -1.00 -26.93 303.22 -6.96 -33.89 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -6.74 Total: 3.56 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: 0.26 Total: -19.62 kcal Atomic # 7 Polarization: -23.50 SS G_CDS: 0.61 Total: -22.89 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.64 Total: -15.06 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -26.93 -6.96 -33.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699502088.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.110 kcal (2) G-P(sol) polarization free energy of solvation -26.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds