Wall clock time and date at job start Mon Mar 30 2020 07:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47274 * 2 1 4 4 C 1.53002 * 109.47249 * 240.00284 * 2 1 3 5 5 H 1.09004 * 110.50076 * 64.10864 * 4 2 1 6 6 C 1.54678 * 110.56590 * 301.37234 * 4 2 1 7 7 O 1.44738 * 104.71781 * 217.69618 * 6 4 2 8 8 C 1.44621 * 105.51274 * 39.80209 * 7 6 4 9 9 C 1.53677 * 104.63229 * 320.34537 * 8 7 6 10 10 C 1.53302 * 110.73099 * 263.94397 * 9 8 7 11 11 C 1.55022 * 103.81554 * 239.54893 * 10 9 8 12 12 C 1.55066 * 102.11355 * 20.86291 * 11 10 9 13 13 C 1.52997 * 110.58916 * 82.18861 * 12 11 10 14 14 C 1.50703 * 110.58686 * 204.95232 * 12 11 10 15 15 H 1.07996 * 119.99955 * 0.02562 * 14 12 11 16 16 C 1.37877 * 120.00088 * 179.97438 * 14 12 11 17 17 N 1.31517 * 119.99793 * 0.02562 * 16 14 12 18 18 Si 1.86797 * 120.00259 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.46997 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47408 * 119.99939 * 18 16 14 21 21 H 1.48501 * 109.47164 * 240.00380 * 18 16 14 22 22 O 1.42802 * 111.10978 * 143.54714 * 9 8 7 23 23 H 1.08999 * 109.46698 * 299.99775 * 1 2 3 24 24 H 1.08995 * 109.46862 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47079 * 59.99523 * 1 2 3 26 26 H 1.08995 * 109.47476 * 120.00165 * 2 1 3 27 27 H 1.09007 * 109.46735 * 65.78248 * 3 2 1 28 28 H 1.08998 * 109.47112 * 185.78003 * 3 2 1 29 29 H 1.09001 * 109.47339 * 305.78778 * 3 2 1 30 30 H 1.09005 * 110.36317 * 336.42728 * 6 4 2 31 31 H 1.08995 * 110.37035 * 98.74938 * 6 4 2 32 32 H 1.09003 * 110.40235 * 201.56435 * 8 7 6 33 33 H 1.08995 * 110.50633 * 79.18525 * 8 7 6 34 34 H 1.08996 * 110.55515 * 358.13374 * 10 9 8 35 35 H 1.09000 * 110.55222 * 120.97093 * 10 9 8 36 36 H 1.09002 * 110.87208 * 139.01684 * 11 10 9 37 37 H 1.09001 * 110.87633 * 262.70780 * 11 10 9 38 38 H 1.08998 * 109.47147 * 60.00130 * 13 12 11 39 39 H 1.09005 * 109.47208 * 179.97438 * 13 12 11 40 40 H 1.08998 * 109.47248 * 299.99888 * 13 12 11 41 41 H 0.97000 * 120.00203 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.7470 -0.1800 -2.1489 6 6 1.5104 -2.1738 -1.2924 7 8 2.6102 -2.9506 -1.8233 8 6 3.8007 -2.4050 -1.2097 9 6 3.5671 -0.8862 -1.1919 10 6 4.2306 -0.2208 -2.4031 11 6 5.2323 0.7804 -1.7728 12 6 5.4181 0.2007 -0.3467 13 6 6.4416 -0.9365 -0.3573 14 6 5.8399 1.2822 0.6143 15 1 5.9692 2.2955 0.2638 16 6 6.0596 0.9783 1.9411 17 7 5.9015 -0.2556 2.3679 18 14 6.5817 2.3191 3.1323 19 1 6.6890 3.6108 2.4077 20 1 5.5721 2.4404 4.2145 21 1 7.8998 1.9718 3.7217 22 8 4.1037 -0.2972 -0.0068 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 -0.8899 26 1 1.8934 -0.5138 0.8899 27 1 1.7637 1.9256 0.9373 28 1 3.1251 1.4442 -0.1035 29 1 1.5946 1.9855 -0.8336 30 1 1.2556 -2.5146 -0.2888 31 1 0.6428 -2.2420 -1.9487 32 1 4.6805 -2.6471 -1.8060 33 1 3.9148 -2.7839 -0.1942 34 1 4.7571 -0.9609 -3.0056 35 1 3.4895 0.3063 -3.0039 36 1 6.1762 0.7806 -2.3180 37 1 4.8059 1.7828 -1.7321 38 1 7.4004 -0.5591 -0.7128 39 1 6.5583 -1.3298 0.6526 40 1 6.0957 -1.7305 -1.0191 41 1 6.0564 -0.4695 3.3013 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699502088.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:03 Heat of formation + Delta-G solvation = -113.928802 kcal Electronic energy + Delta-G solvation = -21318.396809 eV Core-core repulsion = 18390.404857 eV Total energy + Delta-G solvation = -2927.991952 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.71273 -38.73750 -36.47542 -34.80802 -32.76549 -31.78342 -29.74872 -29.00251 -27.85791 -27.09003 -24.38768 -23.73431 -21.60484 -21.27778 -20.16264 -18.52470 -17.43218 -16.88648 -16.58210 -16.27090 -15.95788 -15.43187 -14.89513 -14.69533 -14.61860 -14.13319 -13.77114 -13.70306 -13.31317 -12.98572 -12.93626 -12.83274 -12.79033 -12.50866 -12.39668 -12.24516 -12.03819 -11.91060 -11.78256 -11.55620 -11.33001 -11.22723 -10.94767 -10.87123 -10.60611 -10.51473 -9.68635 -8.02482 -6.23409 1.39783 1.43788 1.52772 2.43712 2.94687 3.15783 3.54797 3.68830 3.89156 3.93252 4.15432 4.18630 4.31995 4.44432 4.49359 4.51405 4.60196 4.65466 4.83126 4.86930 4.90116 4.94329 4.97121 4.99364 5.03785 5.05176 5.14846 5.16417 5.24122 5.31217 5.33452 5.44295 5.45718 5.67085 5.68751 5.84310 5.94093 6.19112 6.39567 6.69681 7.09491 7.50132 8.97699 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.023075 B = 0.009010 C = 0.007783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.124218 B = 3107.044718 C = 3596.706198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.066 4.066 3 C -0.147 4.147 4 C -0.104 4.104 5 H 0.098 0.902 6 C 0.050 3.950 7 O -0.391 6.391 8 C 0.040 3.960 9 C 0.062 3.938 10 C -0.129 4.129 11 C -0.137 4.137 12 C 0.217 3.783 13 C -0.150 4.150 14 C -0.528 4.528 15 H 0.056 0.944 16 C 0.037 3.963 17 N -0.887 5.887 18 Si 0.943 3.057 19 H -0.267 1.267 20 H -0.286 1.286 21 H -0.281 1.281 22 O -0.341 6.341 23 H 0.052 0.948 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.041 0.959 27 H 0.032 0.968 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.117 0.883 32 H 0.093 0.907 33 H 0.042 0.958 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.035 0.965 39 H 0.063 0.937 40 H 0.033 0.967 41 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.914 -0.665 -7.747 11.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.084 4.084 3 C -0.204 4.204 4 C -0.122 4.122 5 H 0.116 0.884 6 C -0.026 4.026 7 O -0.310 6.310 8 C -0.036 4.036 9 C 0.021 3.979 10 C -0.167 4.167 11 C -0.175 4.175 12 C 0.180 3.820 13 C -0.208 4.208 14 C -0.566 4.566 15 H 0.074 0.926 16 C -0.165 4.165 17 N -0.525 5.525 18 Si 0.769 3.231 19 H -0.191 1.191 20 H -0.212 1.212 21 H -0.207 1.207 22 O -0.260 6.260 23 H 0.071 0.929 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.135 0.865 32 H 0.111 0.889 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.054 0.946 39 H 0.082 0.918 40 H 0.052 0.948 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.013 -0.939 -7.537 11.041 hybrid contribution 0.769 0.643 1.116 1.500 sum -7.245 -0.295 -6.422 9.686 Atomic orbital electron populations 1.21872 0.93777 1.02077 1.02156 1.20683 0.95578 0.96073 0.96095 1.21922 1.03498 0.95280 0.99714 1.22652 0.92964 0.96779 0.99826 0.88434 1.23713 0.90550 0.88967 0.99378 1.89084 1.16501 1.58101 1.67359 1.23923 0.88535 0.93867 0.97323 1.22738 0.94572 0.92195 0.88412 1.22883 0.98726 0.98454 0.96604 1.23153 0.98622 0.98572 0.97147 1.20109 0.81068 0.90483 0.90382 1.22153 0.98339 0.98362 1.01912 1.21208 1.46388 0.94763 0.94221 0.92583 1.25630 0.94285 0.96828 0.99773 1.70060 1.47980 1.19050 1.15371 0.85756 0.77635 0.80408 0.79286 1.19121 1.21233 1.20685 1.89176 1.31844 1.75392 1.29603 0.92918 0.91940 0.91433 0.94075 0.94858 0.91250 0.92847 0.92769 0.86512 0.88893 0.94000 0.90707 0.89773 0.91376 0.92262 0.94615 0.91785 0.94774 0.93363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 8.95 71.98 0.64 -2.86 16 2 C -0.07 -2.17 1.92 -10.79 -0.02 -2.19 16 3 C -0.15 -5.29 8.90 71.98 0.64 -4.65 16 4 C -0.10 -3.25 2.32 -9.99 -0.02 -3.27 16 5 H 0.10 2.69 7.17 -2.39 -0.02 2.67 16 6 C 0.05 1.45 6.14 72.55 0.45 1.89 16 7 O -0.39 -13.41 11.66 -148.98 -1.74 -15.14 16 8 C 0.04 1.51 5.66 72.21 0.41 1.92 16 9 C 0.06 2.32 0.79 -10.23 -0.01 2.31 16 10 C -0.13 -4.33 5.97 31.39 0.19 -4.14 16 11 C -0.14 -5.35 5.69 31.99 0.18 -5.17 16 12 C 0.22 10.21 0.49 -10.83 -0.01 10.20 16 13 C -0.15 -7.02 8.37 71.98 0.60 -6.42 16 14 C -0.53 -27.95 8.08 25.60 0.21 -27.74 16 15 H 0.06 2.95 7.76 -2.91 -0.02 2.93 16 16 C 0.04 2.01 5.29 84.65 0.45 2.45 16 17 N -0.89 -50.03 11.00 21.45 0.24 -49.80 16 18 Si 0.94 42.99 29.54 68.60 2.03 45.02 16 19 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 20 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 22 O -0.34 -15.87 6.43 -148.98 -0.96 -16.83 16 23 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.06 1.37 7.02 -2.39 -0.02 1.35 16 25 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.04 1.67 7.67 -2.39 -0.02 1.65 16 27 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 28 H 0.07 3.00 4.70 -2.39 -0.01 2.99 16 29 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.05 1.61 7.55 -2.38 -0.02 1.59 16 31 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.09 3.29 6.09 -2.39 -0.01 3.28 16 33 H 0.04 1.77 8.10 -2.39 -0.02 1.75 16 34 H 0.07 2.33 7.31 -2.39 -0.02 2.31 16 35 H 0.08 2.45 7.17 -2.39 -0.02 2.43 16 36 H 0.07 2.49 8.04 -2.39 -0.02 2.47 16 37 H 0.06 2.33 7.93 -2.39 -0.02 2.31 16 38 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.06 3.41 5.88 -2.38 -0.01 3.40 16 40 H 0.03 1.41 5.14 -2.39 -0.01 1.40 16 41 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -58.70 303.22 4.27 -54.43 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 1.00 Total: 19.98 kcal Atomic # 6 Polarization: -41.37 SS G_CDS: 3.71 Total: -37.66 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: 0.24 Total: -49.80 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -2.70 Total: -31.98 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -58.70 4.27 -54.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699502088.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.497 kcal (2) G-P(sol) polarization free energy of solvation -58.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds