Wall clock time and date at job start Mon Mar 30 2020 07:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47111 * 2 1 4 4 C 1.53003 * 109.46648 * 119.99617 * 2 1 3 5 5 H 1.09002 * 110.49918 * 47.89232 * 4 2 1 6 6 C 1.54671 * 110.56179 * 285.15574 * 4 2 1 7 7 O 1.44730 * 104.71724 * 217.68518 * 6 4 2 8 8 C 1.44610 * 105.50389 * 39.83199 * 7 6 4 9 9 C 1.53727 * 104.64384 * 320.30728 * 8 7 6 10 10 C 1.53629 * 110.46907 * 142.47372 * 9 8 7 11 11 C 1.55488 * 101.99182 * 101.31164 * 10 9 8 12 12 C 1.55018 * 101.02519 * 33.49931 * 11 10 9 13 13 C 1.53008 * 110.30195 * 205.07286 * 12 11 10 14 14 C 1.50695 * 110.38776 * 82.96844 * 12 11 10 15 15 H 1.07995 * 119.99868 * 239.62911 * 14 12 11 16 16 C 1.37878 * 119.99905 * 59.62197 * 14 12 11 17 17 N 1.31516 * 119.99805 * 190.25693 * 16 14 12 18 18 Si 1.86800 * 120.00153 * 10.25992 * 16 14 12 19 19 H 1.48503 * 109.47232 * 94.81701 * 18 16 14 20 20 H 1.48497 * 109.46925 * 214.81443 * 18 16 14 21 21 H 1.48498 * 109.46905 * 334.81544 * 18 16 14 22 22 O 1.42360 * 111.25757 * 263.05866 * 9 8 7 23 23 H 1.09007 * 109.46793 * 55.79370 * 1 2 3 24 24 H 1.09003 * 109.47392 * 175.78960 * 1 2 3 25 25 H 1.08996 * 109.47634 * 295.79211 * 1 2 3 26 26 H 1.09001 * 109.47108 * 239.99167 * 2 1 3 27 27 H 1.08997 * 109.47404 * 52.89792 * 3 2 1 28 28 H 1.09001 * 109.47421 * 172.89672 * 3 2 1 29 29 H 1.08998 * 109.47147 * 292.89529 * 3 2 1 30 30 H 1.08989 * 110.36577 * 336.42269 * 6 4 2 31 31 H 1.09001 * 110.35988 * 98.74583 * 6 4 2 32 32 H 1.09003 * 110.40066 * 201.51908 * 8 7 6 33 33 H 1.08999 * 110.40399 * 79.09813 * 8 7 6 34 34 H 1.08999 * 110.93077 * 219.48818 * 10 9 8 35 35 H 1.09004 * 110.92581 * 343.13616 * 10 9 8 36 36 H 1.09001 * 111.10585 * 275.56163 * 11 10 9 37 37 H 1.08997 * 111.10947 * 151.44228 * 11 10 9 38 38 H 1.09000 * 109.47040 * 170.47110 * 13 12 11 39 39 H 1.08996 * 109.47418 * 290.47778 * 13 12 11 40 40 H 1.09010 * 109.46888 * 50.47781 * 13 12 11 41 41 H 0.97001 * 119.99814 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.5216 -1.6712 1.3799 6 6 1.8640 0.1702 2.5010 7 8 3.0425 -0.0837 3.3019 8 6 4.1373 -0.1723 2.3613 9 6 3.5589 -0.9422 1.1630 10 6 4.1102 -0.3777 -0.1551 11 6 5.2064 -1.4186 -0.5189 12 6 4.5730 -2.7214 0.0329 13 6 5.6626 -3.7450 0.3585 14 6 3.5992 -3.2949 -0.9640 15 1 2.5625 -3.4268 -0.6917 16 6 4.0319 -3.6511 -2.2238 17 7 3.1575 -3.9595 -3.1565 18 14 5.8599 -3.6959 -2.6056 19 1 6.3703 -5.0783 -2.4217 20 1 6.0827 -3.2687 -4.0102 21 1 6.5798 -2.7763 -1.6883 22 8 3.8843 -2.3263 1.2331 23 1 -0.3633 0.5778 -0.8500 24 1 -0.3634 -1.0249 -0.0755 25 1 -0.3634 0.4471 0.9252 26 1 1.8934 -0.5140 -0.8899 27 1 1.5767 1.9917 0.8196 28 1 3.1226 1.4451 0.1271 29 1 1.7842 1.9182 -0.9467 30 1 1.8195 1.2210 2.2151 31 1 0.9636 -0.1141 3.0456 32 1 4.9709 -0.7213 2.7991 33 1 4.4564 0.8239 2.0546 34 1 3.3342 -0.3460 -0.9199 35 1 4.5460 0.6099 -0.0036 36 1 6.1450 -1.1934 -0.0126 37 1 5.3489 -1.4778 -1.5979 38 1 5.2236 -4.5837 0.8988 39 1 6.1119 -4.1044 -0.5673 40 1 6.4288 -3.2761 0.9760 41 1 3.4619 -4.2105 -4.0427 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699502094.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:12 Heat of formation + Delta-G solvation = -86.033199 kcal Electronic energy + Delta-G solvation = -21284.061773 eV Core-core repulsion = 18357.279466 eV Total energy + Delta-G solvation = -2926.782308 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.02266 -39.06337 -36.75961 -35.09591 -33.04662 -32.59845 -29.85119 -28.62729 -28.11398 -27.14616 -25.01644 -23.86533 -22.41546 -21.30875 -19.74645 -18.51456 -17.61585 -17.38867 -17.00006 -16.33026 -16.18965 -15.60852 -15.09006 -14.86269 -14.53160 -14.38375 -14.15971 -13.92380 -13.72962 -13.54681 -13.24377 -13.17341 -12.76061 -12.56849 -12.46018 -12.20957 -12.12378 -11.81874 -11.72483 -11.48122 -11.31810 -11.21754 -10.94429 -10.87249 -10.70118 -10.59366 -9.92106 -8.32876 -6.35450 1.31070 1.34276 1.44371 2.29239 2.88695 3.01621 3.15954 3.60247 3.86104 3.93547 3.93880 4.03593 4.22854 4.23908 4.34926 4.43608 4.49374 4.56941 4.61757 4.70273 4.75813 4.77092 4.82921 4.85523 4.89451 4.95553 5.01363 5.09344 5.10079 5.16254 5.19233 5.35307 5.36969 5.47462 5.53137 5.62294 5.68370 5.83216 6.20551 6.57057 6.74236 7.31032 8.84120 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.025167 B = 0.009205 C = 0.007842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.310861 B = 3041.025804 C = 3569.468474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 C -0.159 4.159 4 C -0.118 4.118 5 H 0.050 0.950 6 C 0.048 3.952 7 O -0.396 6.396 8 C 0.047 3.953 9 C 0.081 3.919 10 C -0.139 4.139 11 C -0.153 4.153 12 C 0.197 3.803 13 C -0.144 4.144 14 C -0.518 4.518 15 H 0.023 0.977 16 C 0.021 3.979 17 N -0.942 5.942 18 Si 0.928 3.072 19 H -0.283 1.283 20 H -0.300 1.300 21 H -0.206 1.206 22 O -0.383 6.383 23 H 0.065 0.935 24 H 0.032 0.968 25 H 0.072 0.928 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.047 0.953 39 H 0.048 0.952 40 H 0.069 0.931 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.237 13.010 7.167 15.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 C -0.215 4.215 4 C -0.137 4.137 5 H 0.069 0.931 6 C -0.028 4.028 7 O -0.315 6.315 8 C -0.029 4.029 9 C 0.040 3.960 10 C -0.176 4.176 11 C -0.191 4.191 12 C 0.159 3.841 13 C -0.201 4.201 14 C -0.556 4.556 15 H 0.041 0.959 16 C -0.176 4.176 17 N -0.581 5.581 18 Si 0.754 3.246 19 H -0.211 1.211 20 H -0.228 1.228 21 H -0.128 1.128 22 O -0.303 6.303 23 H 0.084 0.916 24 H 0.051 0.949 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.115 0.885 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.114 0.886 34 H 0.105 0.895 35 H 0.124 0.876 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.088 0.912 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.160 12.804 7.413 14.952 hybrid contribution 0.149 -1.104 -1.144 1.596 sum 2.309 11.700 6.270 13.473 Atomic orbital electron populations 1.21817 0.94492 1.00901 1.02712 1.21186 0.96209 0.97149 0.96211 1.22296 1.02512 0.93966 1.02739 1.22651 0.95491 0.98897 0.96698 0.93103 1.23877 0.88898 0.99910 0.90126 1.89112 1.17870 1.93436 1.31092 1.23804 0.90447 0.99905 0.88763 1.22766 0.94087 0.83040 0.96068 1.23509 0.98657 0.98762 0.96629 1.23709 0.98287 0.96096 1.00970 1.20325 0.89268 0.92221 0.82324 1.22191 0.97979 0.99681 1.00200 1.21291 0.95179 1.42107 0.97038 0.95897 1.25726 1.02305 0.94259 0.95337 1.70080 1.36293 1.47921 1.03835 0.86486 0.81384 0.79629 0.77080 1.21059 1.22772 1.12848 1.88238 1.77541 1.24197 1.40368 0.91608 0.94905 0.90923 0.92586 0.90494 0.91052 0.91826 0.88537 0.88865 0.89073 0.88603 0.89539 0.87575 0.90161 0.91825 0.93354 0.93366 0.91223 0.92580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 9.12 71.98 0.66 -3.21 16 2 C -0.09 -2.74 2.20 -10.79 -0.02 -2.76 16 3 C -0.16 -3.57 7.72 71.98 0.56 -3.01 16 4 C -0.12 -4.05 2.72 -9.98 -0.03 -4.08 16 5 H 0.05 2.12 7.99 -2.39 -0.02 2.10 16 6 C 0.05 1.31 6.53 72.55 0.47 1.79 16 7 O -0.40 -12.72 11.66 -148.98 -1.74 -14.45 16 8 C 0.05 1.42 6.97 72.23 0.50 1.92 16 9 C 0.08 2.92 1.13 -10.09 -0.01 2.91 16 10 C -0.14 -4.72 3.90 31.66 0.12 -4.60 16 11 C -0.15 -5.92 4.53 32.14 0.15 -5.78 16 12 C 0.20 9.14 0.86 -10.85 -0.01 9.13 16 13 C -0.14 -6.06 8.29 71.98 0.60 -5.46 16 14 C -0.52 -29.49 8.80 25.60 0.23 -29.27 16 15 H 0.02 1.51 8.06 -2.91 -0.02 1.49 16 16 C 0.02 1.21 5.31 84.65 0.45 1.66 16 17 N -0.94 -58.17 13.96 21.45 0.30 -57.87 16 18 Si 0.93 42.37 22.75 68.60 1.56 43.93 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 20 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 21 H -0.21 -8.05 4.57 99.48 0.45 -7.59 16 22 O -0.38 -17.57 10.05 -148.98 -1.50 -19.06 16 23 H 0.06 1.59 8.14 -2.38 -0.02 1.58 16 24 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.07 1.60 7.71 -2.39 -0.02 1.59 16 26 H 0.06 2.20 5.93 -2.39 -0.01 2.19 16 27 H 0.08 1.39 6.14 -2.39 -0.01 1.38 16 28 H 0.07 1.56 4.63 -2.39 -0.01 1.55 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.10 2.09 5.12 -2.39 -0.01 2.08 16 31 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.09 2.75 8.08 -2.39 -0.02 2.73 16 33 H 0.10 2.21 7.38 -2.39 -0.02 2.19 16 34 H 0.09 3.27 4.36 -2.39 -0.01 3.26 16 35 H 0.11 2.70 5.93 -2.38 -0.01 2.69 16 36 H 0.08 2.63 7.97 -2.39 -0.02 2.61 16 37 H 0.06 2.60 4.89 -2.39 -0.01 2.59 16 38 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.05 2.03 3.01 -2.39 -0.01 2.03 16 40 H 0.07 2.45 8.03 -2.38 -0.02 2.43 16 41 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -68.32 289.51 3.05 -65.27 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 0.77 Total: 22.95 kcal Atomic # 6 Polarization: -44.42 SS G_CDS: 3.66 Total: -40.76 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: 0.30 Total: -57.87 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: -3.23 Total: -33.52 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 1.56 Total: 43.93 kcal Total: -68.32 3.05 -65.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699502094.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.765 kcal (2) G-P(sol) polarization free energy of solvation -68.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds