Wall clock time and date at job start Mon Mar 30 2020 06:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86297 * 109.46956 * 2 1 4 4 C 1.86305 * 109.46894 * 240.00394 * 2 1 3 5 5 O 1.63093 * 109.47046 * 120.00632 * 2 1 3 6 6 C 1.42892 * 114.00540 * 75.00769 * 5 2 1 7 7 C 1.50706 * 109.47103 * 62.89674 * 6 5 2 8 8 N 1.27942 * 119.99717 * 238.15067 * 7 6 5 9 9 Si 1.86798 * 120.00047 * 58.14814 * 7 6 5 10 10 H 1.48493 * 109.47220 * 274.91944 * 9 7 6 11 11 H 1.48501 * 109.47070 * 34.92070 * 9 7 6 12 12 H 1.48503 * 109.46928 * 154.91486 * 9 7 6 13 13 C 1.53002 * 109.47292 * 302.89575 * 6 5 2 14 14 H 1.08999 * 109.61171 * 63.55244 * 13 6 5 15 15 C 1.53300 * 109.61765 * 303.19294 * 13 6 5 16 16 C 1.52193 * 109.08541 * 166.44380 * 15 13 6 17 17 C 1.52071 * 110.95688 * 53.59542 * 16 15 13 18 18 H 1.08999 * 114.63226 * 194.52151 * 17 16 15 19 19 C 1.52294 * 119.23190 * 50.66151 * 17 16 15 20 20 C 1.52063 * 120.02201 * 339.66147 * 17 16 15 21 21 H 1.09004 * 117.25760 * 214.82326 * 20 17 16 22 22 C 1.52712 * 120.52161 * 4.54625 * 20 17 16 23 23 H 1.08999 * 109.47375 * 291.51671 * 1 2 3 24 24 H 1.09000 * 109.47476 * 51.51913 * 1 2 3 25 25 H 1.09002 * 109.47444 * 171.51597 * 1 2 3 26 26 H 1.09006 * 109.46821 * 179.97438 * 3 2 1 27 27 H 1.08993 * 109.47381 * 300.00121 * 3 2 1 28 28 H 1.09002 * 109.46805 * 60.00220 * 3 2 1 29 29 H 1.08999 * 109.46824 * 316.63029 * 4 2 1 30 30 H 1.08992 * 109.47367 * 76.63202 * 4 2 1 31 31 H 1.08998 * 109.47134 * 196.63203 * 4 2 1 32 32 H 1.08998 * 109.47259 * 182.89310 * 6 5 2 33 33 H 0.97004 * 119.99888 * 179.97438 * 8 7 6 34 34 H 1.08998 * 109.61455 * 285.56081 * 15 13 6 35 35 H 1.09000 * 109.61688 * 46.09909 * 15 13 6 36 36 H 1.09000 * 107.94047 * 293.88916 * 16 15 13 37 37 H 1.08995 * 110.10560 * 174.69567 * 16 15 13 38 38 H 1.09001 * 117.53836 * 142.56233 * 19 17 16 39 39 H 1.09000 * 117.54116 * 357.32022 * 19 17 16 40 40 H 1.09005 * 109.35900 * 218.31090 * 22 20 17 41 41 H 1.09006 * 109.35618 * 98.73469 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7564 0.0000 4 6 2.4839 -0.8782 -1.5213 5 8 2.4066 -0.7690 1.3316 6 6 2.2820 -2.1913 1.2731 7 6 3.1288 -2.7238 0.1459 8 7 2.5892 -3.4060 -0.7924 9 14 4.9661 -2.3878 0.1186 10 1 5.2182 -1.0656 -0.5085 11 1 5.4894 -2.3843 1.5083 12 1 5.6513 -3.4464 -0.6656 13 6 0.8182 -2.5655 1.0321 14 1 0.4988 -2.1870 0.0611 15 6 -0.0566 -1.9578 2.1346 16 6 -1.5170 -2.0428 1.7146 17 6 -1.8935 -3.4681 1.3413 18 1 -2.8354 -3.5624 0.8009 19 6 -1.5615 -4.6012 2.3031 20 6 -0.8105 -4.4685 0.9693 21 1 -1.0530 -5.2052 0.2033 22 6 0.6649 -4.0862 1.0661 23 1 -0.3634 0.3769 0.9560 24 1 -0.3634 0.6394 -0.8044 25 1 -0.3634 -1.0164 -0.1516 26 1 3.5740 1.7564 0.0005 27 1 2.1206 2.2703 -0.8899 28 1 2.1206 2.2702 0.8900 29 1 1.9007 -1.7851 -1.6807 30 1 2.3811 -0.2232 -2.3863 31 1 3.5334 -1.1401 -1.3867 32 1 2.6174 -2.6244 2.2154 33 1 3.1341 -3.7484 -1.5182 34 1 0.0775 -2.5192 3.0592 35 1 0.2237 -0.9163 2.2918 36 1 -1.6555 -1.3955 0.8486 37 1 -2.1605 -1.7014 2.5254 38 1 -2.2845 -5.4116 2.3958 39 1 -1.0198 -4.3467 3.2140 40 1 1.2071 -4.5228 0.2273 41 1 1.0771 -4.4702 1.9992 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700109457.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:28 Heat of formation + Delta-G solvation = -11.742246 kcal Electronic energy + Delta-G solvation = -19113.555230 eV Core-core repulsion = 16539.545128 eV Total energy + Delta-G solvation = -2574.010102 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.152 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.27540 -38.85643 -36.11036 -34.07300 -31.89169 -29.51663 -28.55300 -28.29547 -27.70628 -25.37533 -23.12386 -21.93982 -20.99437 -19.50135 -18.02371 -17.10535 -16.79638 -16.54370 -16.00180 -15.05503 -14.93186 -14.77500 -14.47995 -14.37212 -14.00710 -13.83316 -13.48691 -13.45505 -13.21458 -13.09974 -12.86689 -12.78885 -12.51267 -12.34688 -12.22832 -12.00291 -11.83419 -11.68686 -11.35275 -11.26914 -10.90088 -10.64231 -10.49258 -10.42649 -10.32595 -9.69668 0.57619 0.97226 1.35961 1.45274 1.72812 1.82391 1.91292 2.04037 2.54141 2.94713 3.36983 3.67765 3.93523 3.99692 4.12475 4.16802 4.29387 4.37520 4.55990 4.59763 4.68170 4.72549 4.74832 4.75321 4.79340 4.80664 4.83401 4.92679 4.96838 4.99407 5.02776 5.17862 5.27806 5.32185 5.39325 5.43269 5.46090 5.50761 5.57756 5.62397 5.67188 5.80889 6.71802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.517 4.517 2 Si 1.242 2.758 3 C -0.471 4.471 4 C -0.525 4.525 5 O -0.608 6.608 6 C 0.156 3.844 7 C -0.051 4.051 8 N -0.596 5.596 9 Si 0.927 3.073 10 H -0.232 1.232 11 H -0.231 1.231 12 H -0.248 1.248 13 C -0.124 4.124 14 H 0.102 0.898 15 C -0.122 4.122 16 C -0.101 4.101 17 C -0.140 4.140 18 H 0.095 0.905 19 C -0.189 4.189 20 C -0.142 4.142 21 H 0.098 0.902 22 C -0.084 4.084 23 H 0.076 0.924 24 H 0.066 0.934 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.121 0.879 33 H 0.339 0.661 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.852 -0.202 -0.031 0.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.619 4.619 2 Si 1.379 2.621 3 C -0.577 4.577 4 C -0.627 4.627 5 O -0.566 6.566 6 C 0.098 3.902 7 C -0.299 4.299 8 N -0.212 5.212 9 Si 0.743 3.257 10 H -0.155 1.155 11 H -0.153 1.153 12 H -0.171 1.171 13 C -0.142 4.142 14 H 0.119 0.881 15 C -0.159 4.159 16 C -0.138 4.138 17 C -0.158 4.158 18 H 0.113 0.887 19 C -0.226 4.226 20 C -0.160 4.160 21 H 0.117 0.883 22 C -0.121 4.121 23 H 0.095 0.905 24 H 0.085 0.915 25 H 0.109 0.891 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.114 0.886 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.139 0.861 33 H 0.156 0.844 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.106 0.894 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.872 -0.341 0.035 0.937 hybrid contribution 0.192 -0.016 -0.777 0.801 sum 1.065 -0.358 -0.742 1.346 Atomic orbital electron populations 1.27738 1.23977 1.05650 1.04527 0.77333 0.64995 0.64392 0.55412 1.26369 1.06742 1.19763 1.04809 1.27900 1.05954 1.10447 1.18392 1.85501 1.85682 1.20777 1.64614 1.20738 0.93511 0.79171 0.96762 1.31014 1.07922 0.95269 0.95682 1.68179 1.43893 1.06255 1.02899 0.85811 0.73962 0.82316 0.83605 1.15549 1.15286 1.17109 1.22078 0.93541 0.97501 1.01085 0.88059 1.21614 0.94286 1.01936 0.98048 1.20970 0.96295 0.94547 1.01976 1.21812 0.99019 0.91805 1.03180 0.88698 1.23147 1.04259 1.00942 0.94223 1.22219 0.93297 1.02074 0.98430 0.88333 1.21176 0.93706 0.94187 1.03072 0.90531 0.91462 0.89085 0.90935 0.90616 0.90686 0.88636 0.91146 0.91836 0.86106 0.84376 0.91873 0.90217 0.90481 0.91507 0.89355 0.88782 0.88693 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.52 0.32 6.19 101.05 0.63 0.94 16 2 Si 1.24 -1.01 10.59 -169.99 -1.80 -2.81 16 3 C -0.47 0.09 8.65 101.05 0.87 0.97 16 4 C -0.53 0.18 6.88 101.05 0.70 0.87 16 5 O -0.61 0.08 7.57 -35.23 -0.27 -0.19 16 6 C 0.16 -0.11 2.26 -27.88 -0.06 -0.17 16 7 C -0.05 0.04 2.66 -13.90 -0.04 0.01 16 8 N -0.60 0.57 7.59 56.23 0.43 0.99 16 9 Si 0.93 -0.60 26.45 -169.99 -4.50 -5.10 16 10 H -0.23 0.05 6.55 56.52 0.37 0.42 16 11 H -0.23 0.06 7.11 56.52 0.40 0.46 16 12 H -0.25 0.09 7.11 56.52 0.40 0.49 16 13 C -0.12 0.06 0.67 -90.53 -0.06 0.00 16 14 H 0.10 -0.02 3.62 -51.93 -0.19 -0.21 16 15 C -0.12 0.04 3.94 -26.99 -0.11 -0.07 16 16 C -0.10 -0.01 5.58 -27.62 -0.15 -0.16 16 17 C -0.14 -0.08 6.03 -91.93 -0.55 -0.64 16 18 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 19 C -0.19 -0.10 9.65 -26.76 -0.26 -0.35 16 20 C -0.14 -0.08 6.19 -90.91 -0.56 -0.64 16 21 H 0.10 0.06 8.14 -51.93 -0.42 -0.36 16 22 C -0.08 0.01 4.78 -26.94 -0.13 -0.12 16 23 H 0.08 -0.05 6.56 -51.93 -0.34 -0.39 16 24 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 25 H 0.09 -0.03 3.23 -51.93 -0.17 -0.20 16 26 H 0.07 0.00 7.96 -51.93 -0.41 -0.42 16 27 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 28 H 0.07 -0.02 7.96 -51.93 -0.41 -0.43 16 29 H 0.09 -0.02 5.12 -51.93 -0.27 -0.29 16 30 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 31 H 0.06 -0.03 3.58 -51.93 -0.19 -0.21 16 32 H 0.12 -0.24 8.14 -51.93 -0.42 -0.67 16 33 H 0.34 -0.73 8.23 -40.82 -0.34 -1.06 16 34 H 0.06 -0.02 7.13 -51.93 -0.37 -0.39 16 35 H 0.08 -0.04 5.28 -51.93 -0.27 -0.31 16 36 H 0.08 0.00 5.19 -51.93 -0.27 -0.27 16 37 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 38 H 0.09 0.03 8.14 -51.93 -0.42 -0.39 16 39 H 0.09 0.04 7.28 -51.93 -0.38 -0.34 16 40 H 0.09 0.00 5.72 -51.93 -0.30 -0.29 16 41 H 0.06 -0.02 8.06 -51.93 -0.42 -0.44 16 LS Contribution 285.96 15.07 4.31 4.31 Total: 0.00 -1.59 285.96 -8.06 -9.65 By element: Atomic # 1 Polarization: -0.99 SS G_CDS: -6.50 Total: -7.49 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 0.27 Total: 0.64 kcal Atomic # 7 Polarization: 0.57 SS G_CDS: 0.43 Total: 0.99 kcal Atomic # 8 Polarization: 0.08 SS G_CDS: -0.27 Total: -0.19 kcal Atomic # 14 Polarization: -1.62 SS G_CDS: -6.30 Total: -7.91 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -1.59 -8.06 -9.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700109457.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.093 kcal (2) G-P(sol) polarization free energy of solvation -1.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds