Wall clock time and date at job start Mon Mar 30 2020 06:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86297 * 109.46956 * 2 1 4 4 C 1.86305 * 109.46894 * 240.00394 * 2 1 3 5 5 O 1.63093 * 109.47046 * 120.00632 * 2 1 3 6 6 C 1.42892 * 114.00540 * 75.00769 * 5 2 1 7 7 C 1.50706 * 109.47103 * 62.89674 * 6 5 2 8 8 N 1.27942 * 119.99717 * 238.15067 * 7 6 5 9 9 Si 1.86798 * 120.00047 * 58.14814 * 7 6 5 10 10 H 1.48493 * 109.47220 * 274.91944 * 9 7 6 11 11 H 1.48501 * 109.47070 * 34.92070 * 9 7 6 12 12 H 1.48503 * 109.46928 * 154.91486 * 9 7 6 13 13 C 1.53002 * 109.47292 * 302.89575 * 6 5 2 14 14 H 1.08999 * 109.61171 * 63.55244 * 13 6 5 15 15 C 1.53300 * 109.61765 * 303.19294 * 13 6 5 16 16 C 1.52193 * 109.08541 * 166.44380 * 15 13 6 17 17 C 1.52071 * 110.95688 * 53.59542 * 16 15 13 18 18 H 1.08999 * 114.63226 * 194.52151 * 17 16 15 19 19 C 1.52294 * 119.23190 * 50.66151 * 17 16 15 20 20 C 1.52063 * 120.02201 * 339.66147 * 17 16 15 21 21 H 1.09004 * 117.25760 * 214.82326 * 20 17 16 22 22 C 1.52712 * 120.52161 * 4.54625 * 20 17 16 23 23 H 1.08999 * 109.47375 * 291.51671 * 1 2 3 24 24 H 1.09000 * 109.47476 * 51.51913 * 1 2 3 25 25 H 1.09002 * 109.47444 * 171.51597 * 1 2 3 26 26 H 1.09006 * 109.46821 * 179.97438 * 3 2 1 27 27 H 1.08993 * 109.47381 * 300.00121 * 3 2 1 28 28 H 1.09002 * 109.46805 * 60.00220 * 3 2 1 29 29 H 1.08999 * 109.46824 * 316.63029 * 4 2 1 30 30 H 1.08992 * 109.47367 * 76.63202 * 4 2 1 31 31 H 1.08998 * 109.47134 * 196.63203 * 4 2 1 32 32 H 1.08998 * 109.47259 * 182.89310 * 6 5 2 33 33 H 0.97004 * 119.99888 * 179.97438 * 8 7 6 34 34 H 1.08998 * 109.61455 * 285.56081 * 15 13 6 35 35 H 1.09000 * 109.61688 * 46.09909 * 15 13 6 36 36 H 1.09000 * 107.94047 * 293.88916 * 16 15 13 37 37 H 1.08995 * 110.10560 * 174.69567 * 16 15 13 38 38 H 1.09001 * 117.53836 * 142.56233 * 19 17 16 39 39 H 1.09000 * 117.54116 * 357.32022 * 19 17 16 40 40 H 1.09005 * 109.35900 * 218.31090 * 22 20 17 41 41 H 1.09006 * 109.35618 * 98.73469 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7564 0.0000 4 6 2.4839 -0.8782 -1.5213 5 8 2.4066 -0.7690 1.3316 6 6 2.2820 -2.1913 1.2731 7 6 3.1288 -2.7238 0.1459 8 7 2.5892 -3.4060 -0.7924 9 14 4.9661 -2.3878 0.1186 10 1 5.2182 -1.0656 -0.5085 11 1 5.4894 -2.3843 1.5083 12 1 5.6513 -3.4464 -0.6656 13 6 0.8182 -2.5655 1.0321 14 1 0.4988 -2.1870 0.0611 15 6 -0.0566 -1.9578 2.1346 16 6 -1.5170 -2.0428 1.7146 17 6 -1.8935 -3.4681 1.3413 18 1 -2.8354 -3.5624 0.8009 19 6 -1.5615 -4.6012 2.3031 20 6 -0.8105 -4.4685 0.9693 21 1 -1.0530 -5.2052 0.2033 22 6 0.6649 -4.0862 1.0661 23 1 -0.3634 0.3769 0.9560 24 1 -0.3634 0.6394 -0.8044 25 1 -0.3634 -1.0164 -0.1516 26 1 3.5740 1.7564 0.0005 27 1 2.1206 2.2703 -0.8899 28 1 2.1206 2.2702 0.8900 29 1 1.9007 -1.7851 -1.6807 30 1 2.3811 -0.2232 -2.3863 31 1 3.5334 -1.1401 -1.3867 32 1 2.6174 -2.6244 2.2154 33 1 3.1341 -3.7484 -1.5182 34 1 0.0775 -2.5192 3.0592 35 1 0.2237 -0.9163 2.2918 36 1 -1.6555 -1.3955 0.8486 37 1 -2.1605 -1.7014 2.5254 38 1 -2.2845 -5.4116 2.3958 39 1 -1.0198 -4.3467 3.2140 40 1 1.2071 -4.5228 0.2273 41 1 1.0771 -4.4702 1.9992 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700109457.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:28 Heat of formation + Delta-G solvation = 0.698199 kcal Electronic energy + Delta-G solvation = -19113.015772 eV Core-core repulsion = 16539.545128 eV Total energy + Delta-G solvation = -2573.470644 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.152 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.24950 -38.83161 -36.04862 -34.05664 -31.87219 -29.47409 -28.50958 -28.24620 -27.66045 -25.36449 -23.09895 -21.95759 -20.92859 -19.49317 -17.97852 -17.08402 -16.76586 -16.48679 -15.96173 -15.03106 -14.92022 -14.73478 -14.46603 -14.33391 -13.97150 -13.80273 -13.44909 -13.41926 -13.17996 -13.05927 -12.83297 -12.76017 -12.49052 -12.32595 -12.19907 -11.99249 -11.79921 -11.65811 -11.32322 -11.24474 -10.84639 -10.60778 -10.48784 -10.42612 -10.29015 -9.63690 0.64606 1.03362 1.40564 1.51044 1.79195 1.86790 1.96963 2.10521 2.59439 2.91988 3.45946 3.70242 3.93729 4.00868 4.11828 4.19498 4.30527 4.39162 4.59625 4.63944 4.73042 4.76096 4.77048 4.78244 4.81805 4.85513 4.87345 4.93531 5.00639 5.03174 5.03752 5.19062 5.29565 5.34076 5.40740 5.43226 5.49686 5.52869 5.60278 5.66113 5.69709 5.85394 6.83379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.521 4.521 2 Si 1.263 2.737 3 C -0.483 4.483 4 C -0.533 4.533 5 O -0.615 6.615 6 C 0.150 3.850 7 C -0.048 4.048 8 N -0.599 5.599 9 Si 0.938 3.062 10 H -0.239 1.239 11 H -0.236 1.236 12 H -0.252 1.252 13 C -0.121 4.121 14 H 0.099 0.901 15 C -0.121 4.121 16 C -0.101 4.101 17 C -0.145 4.145 18 H 0.092 0.908 19 C -0.190 4.190 20 C -0.145 4.145 21 H 0.095 0.905 22 C -0.083 4.083 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.089 0.911 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.135 0.865 33 H 0.345 0.655 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.925 -0.230 0.095 0.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.622 4.622 2 Si 1.399 2.601 3 C -0.588 4.588 4 C -0.634 4.634 5 O -0.572 6.572 6 C 0.092 3.908 7 C -0.296 4.296 8 N -0.216 5.216 9 Si 0.755 3.245 10 H -0.163 1.163 11 H -0.158 1.158 12 H -0.176 1.176 13 C -0.139 4.139 14 H 0.117 0.883 15 C -0.158 4.158 16 C -0.138 4.138 17 C -0.163 4.163 18 H 0.111 0.889 19 C -0.227 4.227 20 C -0.164 4.164 21 H 0.114 0.886 22 C -0.120 4.120 23 H 0.096 0.904 24 H 0.087 0.913 25 H 0.107 0.893 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.113 0.887 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.152 0.848 33 H 0.163 0.837 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.107 0.893 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.948 -0.369 0.155 1.029 hybrid contribution 0.164 -0.011 -0.835 0.851 sum 1.112 -0.380 -0.680 1.358 Atomic orbital electron populations 1.27772 1.24203 1.05572 1.04655 0.76954 0.64561 0.63651 0.54948 1.26495 1.06664 1.20548 1.05060 1.27986 1.06025 1.10566 1.18832 1.85504 1.85742 1.21093 1.64855 1.20878 0.93371 0.79007 0.97508 1.30938 1.07598 0.95348 0.95717 1.68156 1.44199 1.06221 1.03071 0.85649 0.74089 0.81689 0.83046 1.16302 1.15801 1.17561 1.22035 0.93727 0.97215 1.00907 0.88334 1.21609 0.94000 1.02104 0.98067 1.20976 0.96616 0.94193 1.02008 1.21865 0.99010 0.92158 1.03272 0.88943 1.23170 1.04309 1.00935 0.94280 1.22269 0.93728 1.02021 0.98354 0.88632 1.21167 0.93196 0.94421 1.03206 0.90426 0.91319 0.89266 0.91198 0.90177 0.90691 0.88719 0.91007 0.91809 0.84777 0.83662 0.91829 0.89977 0.90462 0.91473 0.89335 0.88600 0.88828 0.91881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.52 0.68 6.19 113.37 0.70 1.38 16 2 Si 1.26 -2.13 10.59 68.60 0.73 -1.40 16 3 C -0.48 0.14 8.65 113.37 0.98 1.12 16 4 C -0.53 0.36 6.88 113.37 0.78 1.14 16 5 O -0.61 0.34 7.57 -148.98 -1.13 -0.79 16 6 C 0.15 -0.27 2.26 29.85 0.07 -0.20 16 7 C -0.05 0.09 2.66 88.68 0.24 0.33 16 8 N -0.60 1.24 7.59 24.11 0.18 1.42 16 9 Si 0.94 -1.21 26.45 68.60 1.81 0.61 16 10 H -0.24 0.05 6.55 99.48 0.65 0.70 16 11 H -0.24 0.12 7.11 99.48 0.71 0.83 16 12 H -0.25 0.17 7.11 99.48 0.71 0.88 16 13 C -0.12 0.14 0.67 -10.73 -0.01 0.13 16 14 H 0.10 -0.05 3.62 -2.39 -0.01 -0.06 16 15 C -0.12 0.11 3.94 30.43 0.12 0.23 16 16 C -0.10 -0.01 5.58 30.02 0.17 0.16 16 17 C -0.14 -0.19 6.03 -11.64 -0.07 -0.26 16 18 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 19 C -0.19 -0.20 9.65 30.58 0.30 0.09 16 20 C -0.15 -0.17 6.19 -10.98 -0.07 -0.24 16 21 H 0.10 0.15 8.14 -2.38 -0.02 0.13 16 22 C -0.08 0.04 4.78 30.46 0.15 0.18 16 23 H 0.08 -0.12 6.56 -2.39 -0.02 -0.13 16 24 H 0.07 -0.11 7.96 -2.39 -0.02 -0.13 16 25 H 0.09 -0.07 3.23 -2.39 -0.01 -0.08 16 26 H 0.07 0.01 7.96 -2.38 -0.02 -0.01 16 27 H 0.08 -0.11 7.96 -2.39 -0.02 -0.13 16 28 H 0.07 -0.03 7.96 -2.39 -0.02 -0.05 16 29 H 0.09 -0.05 5.12 -2.39 -0.01 -0.06 16 30 H 0.07 -0.08 7.96 -2.39 -0.02 -0.10 16 31 H 0.06 -0.05 3.58 -2.39 -0.01 -0.06 16 32 H 0.13 -0.64 8.14 -2.39 -0.02 -0.66 16 33 H 0.35 -1.52 8.23 -92.71 -0.76 -2.28 16 34 H 0.06 -0.06 7.13 -2.39 -0.02 -0.07 16 35 H 0.08 -0.11 5.28 -2.39 -0.01 -0.12 16 36 H 0.08 0.00 5.19 -2.39 -0.01 -0.01 16 37 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 38 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 39 H 0.10 0.06 7.28 -2.39 -0.02 0.04 16 40 H 0.09 -0.01 5.72 -2.38 -0.01 -0.02 16 41 H 0.06 -0.07 8.06 -2.38 -0.02 -0.09 16 Total: 0.00 -3.33 285.96 5.91 2.58 By element: Atomic # 1 Polarization: -2.30 SS G_CDS: 0.96 Total: -1.33 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: 3.35 Total: 4.08 kcal Atomic # 7 Polarization: 1.24 SS G_CDS: 0.18 Total: 1.42 kcal Atomic # 8 Polarization: 0.34 SS G_CDS: -1.13 Total: -0.79 kcal Atomic # 14 Polarization: -3.33 SS G_CDS: 2.54 Total: -0.79 kcal Total: -3.33 5.91 2.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700109457.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.879 kcal (2) G-P(sol) polarization free energy of solvation -3.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) 2.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds