Wall clock time and date at job start Mon Mar 30 2020 06:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86305 * 109.47127 * 2 1 4 4 C 1.86301 * 109.47459 * 239.99591 * 2 1 3 5 5 O 1.63106 * 109.47118 * 119.99770 * 2 1 3 6 6 C 1.42900 * 113.99869 * 69.32302 * 5 2 1 7 7 C 1.50699 * 109.47244 * 317.11039 * 6 5 2 8 8 N 1.27945 * 119.99932 * 106.18752 * 7 6 5 9 9 Si 1.86794 * 119.99984 * 286.17939 * 7 6 5 10 10 H 1.48500 * 109.47415 * 237.04452 * 9 7 6 11 11 H 1.48500 * 109.47453 * 357.04441 * 9 7 6 12 12 H 1.48506 * 109.46973 * 117.04066 * 9 7 6 13 13 C 1.52997 * 109.46781 * 77.11425 * 6 5 2 14 14 H 1.09004 * 109.61429 * 293.44318 * 13 6 5 15 15 C 1.53302 * 109.61768 * 172.90768 * 13 6 5 16 16 C 1.52875 * 108.58207 * 165.82068 * 15 13 6 17 17 C 1.52715 * 110.15106 * 54.52510 * 16 15 13 18 18 H 1.09001 * 114.91503 * 127.84556 * 17 16 15 19 19 C 1.53652 * 116.02738 * 269.79362 * 17 16 15 20 20 C 1.52067 * 120.52235 * 338.52254 * 17 16 15 21 21 H 1.08997 * 115.93002 * 150.00958 * 20 17 16 22 22 C 1.52073 * 120.02149 * 5.29081 * 20 17 16 23 23 H 1.08995 * 109.47379 * 294.32907 * 1 2 3 24 24 H 1.09006 * 109.46783 * 54.33215 * 1 2 3 25 25 H 1.09005 * 109.46924 * 174.32699 * 1 2 3 26 26 H 1.08993 * 109.46815 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.46449 * 299.99757 * 3 2 1 28 28 H 1.08994 * 109.47262 * 59.99283 * 3 2 1 29 29 H 1.09006 * 109.46796 * 316.35616 * 4 2 1 30 30 H 1.08998 * 109.47082 * 76.34984 * 4 2 1 31 31 H 1.08997 * 109.47086 * 196.35206 * 4 2 1 32 32 H 1.08998 * 109.46677 * 197.10977 * 6 5 2 33 33 H 0.97001 * 119.99643 * 359.97438 * 8 7 6 34 34 H 1.08997 * 109.61663 * 285.55048 * 15 13 6 35 35 H 1.09000 * 109.61892 * 46.08981 * 15 13 6 36 36 H 1.08999 * 109.35915 * 294.31376 * 16 15 13 37 37 H 1.09003 * 109.24289 * 174.65262 * 16 15 13 38 38 H 1.09002 * 117.53870 * 4.30989 * 19 17 16 39 39 H 1.09003 * 117.53952 * 219.06233 * 19 17 16 40 40 H 1.08999 * 109.27040 * 218.03128 * 22 20 17 41 41 H 1.09003 * 109.23800 * 98.54601 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8783 -1.5210 5 8 2.4067 -0.7688 1.3318 6 6 2.1658 -2.1774 1.3288 7 6 0.7703 -2.4473 0.8282 8 7 0.5929 -2.9263 -0.3449 9 14 -0.7005 -2.0829 1.9205 10 1 -1.5044 -3.3189 2.0972 11 1 -0.2275 -1.6065 3.2451 12 1 -1.5391 -1.0332 1.2876 13 6 3.1787 -2.8659 0.4118 14 1 3.0003 -2.5662 -0.6209 15 6 3.0395 -4.3871 0.5415 16 6 3.7897 -5.0454 -0.6165 17 6 5.2355 -4.5551 -0.6531 18 1 5.9874 -5.3438 -0.6781 19 6 5.5018 -3.3041 -1.5046 20 6 5.6234 -3.2439 0.0124 21 1 6.6421 -3.1872 0.3960 22 6 4.5965 -2.4694 0.8237 23 1 -0.3634 0.4233 0.9363 24 1 -0.3633 0.5993 -0.8349 25 1 -0.3633 -1.0227 -0.1016 26 1 3.5740 1.7564 -0.0005 27 1 2.1207 2.2702 -0.8900 28 1 2.1206 2.2704 0.8899 29 1 1.9041 -1.7878 -1.6777 30 1 2.3766 -0.2252 -2.3871 31 1 3.5349 -1.1358 -1.3883 32 1 2.2700 -2.5659 2.3418 33 1 1.3567 -3.1153 -0.9121 34 1 3.4683 -4.7144 1.4886 35 1 1.9859 -4.6631 0.4990 36 1 3.2983 -4.7921 -1.5559 37 1 3.7785 -6.1272 -0.4830 38 1 4.6425 -2.8129 -1.9611 39 1 6.4237 -3.2767 -2.0856 40 1 4.7351 -1.4017 0.6540 41 1 4.7374 -2.6865 1.8825 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700109465.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:34 Heat of formation + Delta-G solvation = -11.172676 kcal Electronic energy + Delta-G solvation = -19143.629751 eV Core-core repulsion = 16569.644347 eV Total energy + Delta-G solvation = -2573.985404 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.152 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.61394 -39.04802 -36.01623 -33.88777 -31.93714 -29.79571 -29.06342 -28.59161 -27.84729 -25.20314 -23.57555 -22.19381 -21.15504 -19.76847 -18.03815 -17.59103 -16.87891 -16.45518 -15.58688 -15.54649 -15.07269 -14.75344 -14.54362 -14.12731 -14.01483 -14.00551 -13.79559 -13.45773 -13.38553 -13.23164 -13.07280 -12.99204 -12.63532 -12.48025 -12.18055 -12.06536 -11.90231 -11.77060 -11.52793 -11.46155 -11.07603 -10.76643 -10.68297 -10.59483 -10.41432 -9.92123 0.54372 1.08258 1.48251 1.59692 1.74392 1.79949 1.91002 1.98861 2.44150 2.76945 3.35805 3.52459 3.62832 3.78111 3.91871 4.02754 4.07895 4.26237 4.36548 4.38987 4.47114 4.53235 4.53494 4.60698 4.67081 4.67465 4.69882 4.70647 4.81278 4.82235 4.88690 4.97923 5.02697 5.11588 5.19207 5.24396 5.25171 5.31874 5.37038 5.42049 5.51702 5.57731 6.65714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.533 4.533 2 Si 1.229 2.771 3 C -0.461 4.461 4 C -0.520 4.520 5 O -0.603 6.603 6 C 0.103 3.897 7 C -0.083 4.083 8 N -0.605 5.605 9 Si 1.051 2.949 10 H -0.251 1.251 11 H -0.242 1.242 12 H -0.228 1.228 13 C -0.160 4.160 14 H 0.103 0.897 15 C -0.121 4.121 16 C -0.089 4.089 17 C -0.149 4.149 18 H 0.102 0.898 19 C -0.189 4.189 20 C -0.139 4.139 21 H 0.100 0.900 22 C -0.072 4.072 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.119 0.881 33 H 0.333 0.667 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.508 -0.065 1.020 1.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.635 4.635 2 Si 1.366 2.634 3 C -0.568 4.568 4 C -0.622 4.622 5 O -0.560 6.560 6 C 0.044 3.956 7 C -0.327 4.327 8 N -0.225 5.225 9 Si 0.863 3.137 10 H -0.175 1.175 11 H -0.165 1.165 12 H -0.150 1.150 13 C -0.178 4.178 14 H 0.121 0.879 15 C -0.158 4.158 16 C -0.127 4.127 17 C -0.167 4.167 18 H 0.120 0.880 19 C -0.226 4.226 20 C -0.157 4.157 21 H 0.118 0.882 22 C -0.109 4.109 23 H 0.096 0.904 24 H 0.097 0.903 25 H 0.107 0.893 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.137 0.863 33 H 0.156 0.844 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.094 0.906 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.839 -0.166 1.186 1.462 hybrid contribution 1.637 -0.029 -1.031 1.935 sum 0.799 -0.195 0.155 0.837 Atomic orbital electron populations 1.27894 1.24149 1.06259 1.05161 0.77457 0.64589 0.65456 0.55868 1.26224 1.06814 1.18782 1.04961 1.27604 1.06974 1.08649 1.18958 1.85518 1.83507 1.21759 1.65237 1.21784 0.91365 0.80380 1.02107 1.32672 1.06274 0.94586 0.99190 1.69457 1.41953 1.06266 1.04826 0.84083 0.73186 0.81248 0.75187 1.17500 1.16522 1.15021 1.22526 0.96661 0.96365 1.02230 0.87921 1.21716 1.00643 0.93555 0.99933 1.21033 0.93025 1.00314 0.98305 1.22218 0.97921 0.91437 1.05157 0.88006 1.23204 1.03388 1.02315 0.93666 1.21871 1.00268 0.99085 0.94451 0.88160 1.20683 0.90952 0.99744 0.99529 0.90400 0.90326 0.89319 0.90740 0.90500 0.90538 0.91063 0.90524 0.90053 0.86345 0.84425 0.90693 0.91430 0.91755 0.91101 0.88766 0.88920 0.90628 0.90770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.53 -0.07 6.22 101.05 0.63 0.56 16 2 Si 1.23 -0.94 11.29 -169.99 -1.92 -2.86 16 3 C -0.46 0.21 8.65 101.05 0.87 1.09 16 4 C -0.52 0.29 6.91 101.05 0.70 0.99 16 5 O -0.60 0.02 7.83 -35.23 -0.28 -0.25 16 6 C 0.10 -0.07 2.18 -27.88 -0.06 -0.13 16 7 C -0.08 0.02 2.08 -13.90 -0.03 -0.01 16 8 N -0.61 -0.28 10.27 56.23 0.58 0.30 16 9 Si 1.05 -0.40 25.76 -169.99 -4.38 -4.78 16 10 H -0.25 -0.07 7.11 56.52 0.40 0.33 16 11 H -0.24 0.22 7.11 56.52 0.40 0.62 16 12 H -0.23 0.02 5.39 56.52 0.30 0.32 16 13 C -0.16 0.13 0.39 -90.53 -0.04 0.10 16 14 H 0.10 -0.09 1.69 -51.93 -0.09 -0.17 16 15 C -0.12 0.11 4.76 -26.64 -0.13 -0.01 16 16 C -0.09 0.06 5.84 -26.94 -0.16 -0.10 16 17 C -0.15 0.03 6.19 -90.90 -0.56 -0.53 16 18 H 0.10 -0.04 8.14 -51.93 -0.42 -0.46 16 19 C -0.19 0.01 9.66 -26.75 -0.26 -0.25 16 20 C -0.14 0.03 6.00 -91.92 -0.55 -0.52 16 21 H 0.10 -0.04 8.14 -51.93 -0.42 -0.47 16 22 C -0.07 0.04 4.67 -27.27 -0.13 -0.09 16 23 H 0.08 -0.03 6.44 -51.93 -0.33 -0.36 16 24 H 0.08 -0.02 7.96 -51.93 -0.41 -0.43 16 25 H 0.09 0.05 3.00 -51.93 -0.16 -0.11 16 26 H 0.07 -0.03 7.96 -51.93 -0.41 -0.45 16 27 H 0.08 -0.08 7.96 -51.93 -0.41 -0.49 16 28 H 0.08 -0.04 7.96 -51.93 -0.41 -0.45 16 29 H 0.07 -0.03 4.29 -51.93 -0.22 -0.25 16 30 H 0.08 -0.06 7.96 -51.93 -0.41 -0.47 16 31 H 0.08 -0.05 5.41 -51.93 -0.28 -0.33 16 32 H 0.12 -0.24 8.02 -51.93 -0.42 -0.66 16 33 H 0.33 -0.07 4.13 -40.82 -0.17 -0.24 16 34 H 0.07 -0.08 8.04 -51.93 -0.42 -0.50 16 35 H 0.07 -0.06 6.41 -51.93 -0.33 -0.39 16 36 H 0.06 -0.03 8.06 -51.93 -0.42 -0.45 16 37 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 38 H 0.09 0.00 6.18 -51.93 -0.32 -0.32 16 39 H 0.09 -0.03 8.14 -51.93 -0.42 -0.45 16 40 H 0.08 -0.02 7.52 -51.93 -0.39 -0.41 16 41 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 LS Contribution 288.04 15.07 4.34 4.34 Total: 0.00 -1.73 288.04 -7.99 -9.72 By element: Atomic # 1 Polarization: -0.94 SS G_CDS: -6.62 Total: -7.56 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: 0.29 Total: 1.09 kcal Atomic # 7 Polarization: -0.28 SS G_CDS: 0.58 Total: 0.30 kcal Atomic # 8 Polarization: 0.02 SS G_CDS: -0.28 Total: -0.25 kcal Atomic # 14 Polarization: -1.35 SS G_CDS: -6.30 Total: -7.64 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -1.73 -7.99 -9.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700109465.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.453 kcal (2) G-P(sol) polarization free energy of solvation -1.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds