Wall clock time and date at job start Mon Mar 30 2020 06:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86305 * 109.47127 * 2 1 4 4 C 1.86301 * 109.47459 * 239.99591 * 2 1 3 5 5 O 1.63106 * 109.47118 * 119.99770 * 2 1 3 6 6 C 1.42900 * 113.99869 * 69.32302 * 5 2 1 7 7 C 1.50699 * 109.47244 * 317.11039 * 6 5 2 8 8 N 1.27945 * 119.99932 * 106.18752 * 7 6 5 9 9 Si 1.86794 * 119.99984 * 286.17939 * 7 6 5 10 10 H 1.48500 * 109.47415 * 237.04452 * 9 7 6 11 11 H 1.48500 * 109.47453 * 357.04441 * 9 7 6 12 12 H 1.48506 * 109.46973 * 117.04066 * 9 7 6 13 13 C 1.52997 * 109.46781 * 77.11425 * 6 5 2 14 14 H 1.09004 * 109.61429 * 293.44318 * 13 6 5 15 15 C 1.53302 * 109.61768 * 172.90768 * 13 6 5 16 16 C 1.52875 * 108.58207 * 165.82068 * 15 13 6 17 17 C 1.52715 * 110.15106 * 54.52510 * 16 15 13 18 18 H 1.09001 * 114.91503 * 127.84556 * 17 16 15 19 19 C 1.53652 * 116.02738 * 269.79362 * 17 16 15 20 20 C 1.52067 * 120.52235 * 338.52254 * 17 16 15 21 21 H 1.08997 * 115.93002 * 150.00958 * 20 17 16 22 22 C 1.52073 * 120.02149 * 5.29081 * 20 17 16 23 23 H 1.08995 * 109.47379 * 294.32907 * 1 2 3 24 24 H 1.09006 * 109.46783 * 54.33215 * 1 2 3 25 25 H 1.09005 * 109.46924 * 174.32699 * 1 2 3 26 26 H 1.08993 * 109.46815 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.46449 * 299.99757 * 3 2 1 28 28 H 1.08994 * 109.47262 * 59.99283 * 3 2 1 29 29 H 1.09006 * 109.46796 * 316.35616 * 4 2 1 30 30 H 1.08998 * 109.47082 * 76.34984 * 4 2 1 31 31 H 1.08997 * 109.47086 * 196.35206 * 4 2 1 32 32 H 1.08998 * 109.46677 * 197.10977 * 6 5 2 33 33 H 0.97001 * 119.99643 * 359.97438 * 8 7 6 34 34 H 1.08997 * 109.61663 * 285.55048 * 15 13 6 35 35 H 1.09000 * 109.61892 * 46.08981 * 15 13 6 36 36 H 1.08999 * 109.35915 * 294.31376 * 16 15 13 37 37 H 1.09003 * 109.24289 * 174.65262 * 16 15 13 38 38 H 1.09002 * 117.53870 * 4.30989 * 19 17 16 39 39 H 1.09003 * 117.53952 * 219.06233 * 19 17 16 40 40 H 1.08999 * 109.27040 * 218.03128 * 22 20 17 41 41 H 1.09003 * 109.23800 * 98.54601 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8783 -1.5210 5 8 2.4067 -0.7688 1.3318 6 6 2.1658 -2.1774 1.3288 7 6 0.7703 -2.4473 0.8282 8 7 0.5929 -2.9263 -0.3449 9 14 -0.7005 -2.0829 1.9205 10 1 -1.5044 -3.3189 2.0972 11 1 -0.2275 -1.6065 3.2451 12 1 -1.5391 -1.0332 1.2876 13 6 3.1787 -2.8659 0.4118 14 1 3.0003 -2.5662 -0.6209 15 6 3.0395 -4.3871 0.5415 16 6 3.7897 -5.0454 -0.6165 17 6 5.2355 -4.5551 -0.6531 18 1 5.9874 -5.3438 -0.6781 19 6 5.5018 -3.3041 -1.5046 20 6 5.6234 -3.2439 0.0124 21 1 6.6421 -3.1872 0.3960 22 6 4.5965 -2.4694 0.8237 23 1 -0.3634 0.4233 0.9363 24 1 -0.3633 0.5993 -0.8349 25 1 -0.3633 -1.0227 -0.1016 26 1 3.5740 1.7564 -0.0005 27 1 2.1207 2.2702 -0.8900 28 1 2.1206 2.2704 0.8899 29 1 1.9041 -1.7878 -1.6777 30 1 2.3766 -0.2252 -2.3871 31 1 3.5349 -1.1358 -1.3883 32 1 2.2700 -2.5659 2.3418 33 1 1.3567 -3.1153 -0.9121 34 1 3.4683 -4.7144 1.4886 35 1 1.9859 -4.6631 0.4990 36 1 3.2983 -4.7921 -1.5559 37 1 3.7785 -6.1272 -0.4830 38 1 4.6425 -2.8129 -1.9611 39 1 6.4237 -3.2767 -2.0856 40 1 4.7351 -1.4017 0.6540 41 1 4.7374 -2.6865 1.8825 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700109465.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:33 Heat of formation + Delta-G solvation = 1.325324 kcal Electronic energy + Delta-G solvation = -19143.087797 eV Core-core repulsion = 16569.644347 eV Total energy + Delta-G solvation = -2573.443450 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 255.152 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.56414 -39.01278 -35.99251 -33.84199 -31.88229 -29.75038 -29.03231 -28.54354 -27.80006 -25.15558 -23.52618 -22.16554 -21.11690 -19.71241 -18.00304 -17.55049 -16.82087 -16.42655 -15.54436 -15.50163 -15.02190 -14.71268 -14.51584 -14.09160 -13.97229 -13.96257 -13.74792 -13.40527 -13.32843 -13.18997 -13.04568 -12.93729 -12.59308 -12.44374 -12.13389 -12.01978 -11.85461 -11.74380 -11.50702 -11.41076 -11.02976 -10.72359 -10.64182 -10.55631 -10.38670 -9.89403 0.57118 1.11503 1.54009 1.63620 1.78209 1.85602 1.94344 2.03331 2.48690 2.79633 3.41084 3.57758 3.68993 3.83281 3.96630 4.06334 4.13667 4.31571 4.42499 4.44613 4.53624 4.58394 4.60263 4.65340 4.69255 4.71510 4.74063 4.74638 4.85584 4.87433 4.92747 5.03569 5.08772 5.16169 5.23963 5.28643 5.30506 5.37678 5.42847 5.47194 5.55219 5.61454 6.69581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.546 4.546 2 Si 1.253 2.747 3 C -0.470 4.470 4 C -0.525 4.525 5 O -0.609 6.609 6 C 0.098 3.902 7 C -0.081 4.081 8 N -0.618 5.618 9 Si 1.058 2.942 10 H -0.262 1.262 11 H -0.231 1.231 12 H -0.234 1.234 13 C -0.157 4.157 14 H 0.102 0.898 15 C -0.119 4.119 16 C -0.090 4.090 17 C -0.151 4.151 18 H 0.103 0.897 19 C -0.195 4.195 20 C -0.139 4.139 21 H 0.102 0.898 22 C -0.072 4.072 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.134 0.866 33 H 0.335 0.665 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.073 0.927 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.717 -0.030 1.402 1.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.647 4.647 2 Si 1.389 2.611 3 C -0.576 4.576 4 C -0.626 4.626 5 O -0.566 6.566 6 C 0.039 3.961 7 C -0.324 4.324 8 N -0.238 5.238 9 Si 0.871 3.129 10 H -0.187 1.187 11 H -0.153 1.153 12 H -0.157 1.157 13 C -0.176 4.176 14 H 0.119 0.881 15 C -0.156 4.156 16 C -0.128 4.128 17 C -0.170 4.170 18 H 0.121 0.879 19 C -0.231 4.231 20 C -0.157 4.157 21 H 0.120 0.880 22 C -0.109 4.109 23 H 0.099 0.901 24 H 0.098 0.902 25 H 0.103 0.897 26 H 0.092 0.908 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.152 0.848 33 H 0.158 0.842 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.091 0.909 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.629 -0.126 1.569 1.695 hybrid contribution 1.558 -0.041 -1.169 1.949 sum 0.929 -0.168 0.400 1.025 Atomic orbital electron populations 1.28042 1.25171 1.06055 1.05445 0.77039 0.63628 0.65002 0.55472 1.26311 1.06877 1.19188 1.05253 1.27662 1.07006 1.08678 1.19295 1.85520 1.83521 1.22060 1.65483 1.21911 0.91009 0.80207 1.02977 1.32729 1.06632 0.94099 0.98968 1.69462 1.42281 1.06876 1.05206 0.83989 0.72862 0.80470 0.75612 1.18691 1.15337 1.15710 1.22497 0.96469 0.96422 1.02176 0.88054 1.21695 1.00560 0.93412 0.99946 1.21044 0.92817 1.00556 0.98351 1.22268 0.98177 0.91445 1.05061 0.87932 1.23230 1.03402 1.02597 0.93907 1.21913 1.00471 0.99057 0.94298 0.88014 1.20691 0.90990 0.99544 0.99711 0.90050 0.90214 0.89746 0.90751 0.90031 0.90496 0.91258 0.90370 0.90003 0.84846 0.84177 0.90309 0.91485 0.92036 0.90782 0.88943 0.88835 0.90860 0.90363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.55 -0.24 6.22 113.37 0.70 0.47 16 2 Si 1.25 -1.94 11.29 68.60 0.77 -1.17 16 3 C -0.47 0.48 8.65 113.37 0.98 1.46 16 4 C -0.53 0.48 6.91 113.37 0.78 1.26 16 5 O -0.61 0.29 7.83 -148.98 -1.17 -0.88 16 6 C 0.10 -0.17 2.18 29.85 0.07 -0.11 16 7 C -0.08 0.04 2.08 88.67 0.18 0.22 16 8 N -0.62 -0.72 10.27 24.11 0.25 -0.47 16 9 Si 1.06 -0.78 25.76 68.60 1.77 0.99 16 10 H -0.26 -0.27 7.11 99.48 0.71 0.43 16 11 H -0.23 0.59 7.11 99.48 0.71 1.30 16 12 H -0.23 -0.05 5.39 99.48 0.54 0.48 16 13 C -0.16 0.29 0.39 -10.74 0.00 0.28 16 14 H 0.10 -0.16 1.69 -2.39 0.00 -0.16 16 15 C -0.12 0.25 4.76 30.65 0.15 0.40 16 16 C -0.09 0.11 5.84 30.46 0.18 0.29 16 17 C -0.15 0.06 6.19 -10.98 -0.07 -0.01 16 18 H 0.10 -0.07 8.14 -2.39 -0.02 -0.09 16 19 C -0.19 -0.02 9.66 30.58 0.30 0.28 16 20 C -0.14 0.08 6.00 -11.64 -0.07 0.01 16 21 H 0.10 -0.10 8.14 -2.39 -0.02 -0.12 16 22 C -0.07 0.09 4.67 30.25 0.14 0.24 16 23 H 0.08 -0.05 6.44 -2.39 -0.02 -0.06 16 24 H 0.08 0.00 7.96 -2.38 -0.02 -0.02 16 25 H 0.08 0.12 3.00 -2.38 -0.01 0.11 16 26 H 0.07 -0.07 7.96 -2.39 -0.02 -0.09 16 27 H 0.08 -0.17 7.96 -2.39 -0.02 -0.19 16 28 H 0.08 -0.08 7.96 -2.39 -0.02 -0.10 16 29 H 0.07 -0.03 4.29 -2.38 -0.01 -0.04 16 30 H 0.08 -0.11 7.96 -2.39 -0.02 -0.12 16 31 H 0.08 -0.08 5.41 -2.39 -0.01 -0.10 16 32 H 0.13 -0.66 8.02 -2.39 -0.02 -0.68 16 33 H 0.33 -0.03 4.13 -92.71 -0.38 -0.41 16 34 H 0.08 -0.22 8.04 -2.39 -0.02 -0.24 16 35 H 0.07 -0.12 6.41 -2.39 -0.02 -0.14 16 36 H 0.06 -0.04 8.06 -2.39 -0.02 -0.06 16 37 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 38 H 0.09 0.03 6.18 -2.39 -0.01 0.02 16 39 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 40 H 0.07 -0.06 7.52 -2.39 -0.02 -0.07 16 41 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16 Total: 0.00 -3.69 288.04 6.18 2.49 By element: Atomic # 1 Polarization: -1.99 SS G_CDS: 1.22 Total: -0.77 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 3.34 Total: 4.79 kcal Atomic # 7 Polarization: -0.72 SS G_CDS: 0.25 Total: -0.47 kcal Atomic # 8 Polarization: 0.29 SS G_CDS: -1.17 Total: -0.88 kcal Atomic # 14 Polarization: -2.72 SS G_CDS: 2.54 Total: -0.18 kcal Total: -3.69 6.18 2.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700109465.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.165 kcal (2) G-P(sol) polarization free energy of solvation -3.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) 2.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds