Wall clock time and date at job start Mon Mar 30 2020 06:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50693 * 109.82639 * 2 1 4 4 H 1.08002 * 120.00647 * 239.11565 * 3 2 1 5 5 C 1.37886 * 119.99820 * 59.11073 * 3 2 1 6 6 N 1.31504 * 119.99788 * 0.02562 * 5 3 2 7 7 Si 1.86801 * 120.00002 * 180.02562 * 5 3 2 8 8 H 1.48501 * 109.47012 * 59.99923 * 7 5 3 9 9 H 1.48495 * 109.47199 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.46725 * 300.00089 * 7 5 3 11 11 C 1.54388 * 109.83248 * 239.11092 * 2 1 3 12 12 C 1.55301 * 102.25700 * 219.12757 * 11 2 1 13 13 C 1.54952 * 100.93713 * 34.13808 * 12 11 2 14 14 C 1.52992 * 110.31220 * 82.56698 * 13 12 11 15 15 C 1.53001 * 110.30516 * 204.64054 * 13 12 11 16 16 H 1.09000 * 109.49561 * 65.02580 * 15 13 12 17 17 C 1.53098 * 109.47861 * 185.05715 * 15 13 12 18 18 C 1.53180 * 109.16075 * 177.59094 * 17 15 13 19 19 C 1.53175 * 109.03606 * 303.01560 * 18 17 15 20 20 C 1.53092 * 109.16344 * 56.98567 * 19 18 17 21 21 O 1.42905 * 109.48128 * 304.99476 * 15 13 12 22 22 O 1.43241 * 109.83181 * 120.98357 * 2 1 3 23 23 H 1.09001 * 109.47061 * 180.88618 * 1 2 3 24 24 H 1.08995 * 109.47215 * 300.88288 * 1 2 3 25 25 H 1.09004 * 109.47348 * 60.88568 * 1 2 3 26 26 H 0.97003 * 120.00081 * 179.97438 * 6 5 3 27 27 H 1.09004 * 110.84315 * 100.93835 * 11 2 1 28 28 H 1.09000 * 110.84717 * 337.32380 * 11 2 1 29 29 H 1.08996 * 111.12659 * 276.21765 * 12 11 2 30 30 H 1.09000 * 111.12479 * 152.04971 * 12 11 2 31 31 H 1.09004 * 109.47475 * 182.08772 * 14 13 12 32 32 H 1.08995 * 109.47521 * 302.09131 * 14 13 12 33 33 H 1.09006 * 109.47055 * 62.09226 * 14 13 12 34 34 H 1.08996 * 109.52270 * 57.68339 * 17 15 13 35 35 H 1.08995 * 109.57012 * 297.52187 * 17 15 13 36 36 H 1.09005 * 109.54069 * 183.15152 * 18 17 15 37 37 H 1.08999 * 109.54515 * 62.88494 * 18 17 15 38 38 H 1.09004 * 109.52714 * 297.07587 * 19 18 17 39 39 H 1.08998 * 109.52443 * 176.88852 * 19 18 17 40 40 H 1.08997 * 109.48111 * 182.40965 * 20 19 18 41 41 H 1.08999 * 109.49220 * 62.37875 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0410 1.4176 0.0000 4 1 2.6759 1.7629 -0.8027 5 6 1.6982 2.2741 1.0248 6 7 0.9255 1.8536 2.0023 7 14 2.3311 4.0316 1.0245 8 1 1.8577 4.7280 -0.1987 9 1 1.8234 4.7408 2.2263 10 1 3.8160 4.0228 1.0458 11 6 2.0537 -0.7456 -1.2463 12 6 3.2730 -1.5216 -0.6781 13 6 2.7746 -1.8451 0.7530 14 6 1.8858 -3.0903 0.7370 15 6 3.9625 -2.0536 1.6945 16 1 4.5158 -1.1198 1.7944 17 6 3.4531 -2.4949 3.0692 18 6 4.6501 -2.7595 3.9877 19 6 5.5553 -3.8108 3.3383 20 6 5.9836 -3.3187 1.9533 21 8 4.8226 -3.0622 1.1605 22 8 2.0159 -0.6937 1.1552 23 1 -0.3633 -1.0276 0.0159 24 1 -0.3633 0.5275 0.8819 25 1 -0.3634 0.5000 -0.8978 26 1 0.6846 2.4560 2.7235 27 1 2.3672 -0.0409 -2.0166 28 1 1.3012 -1.4336 -1.6315 29 1 4.1620 -0.8915 -0.6514 30 1 3.4572 -2.4339 -1.2454 31 1 1.5132 -3.2837 1.7430 32 1 1.0448 -2.9278 0.0631 33 1 2.4663 -3.9467 0.3937 34 1 2.8657 -3.4070 2.9643 35 1 2.8319 -1.7086 3.4979 36 1 4.2962 -3.1278 4.9507 37 1 5.2099 -1.8356 4.1325 38 1 5.0104 -4.7496 3.2390 39 1 6.4380 -3.9649 3.9590 40 1 6.5931 -4.0815 1.4690 41 1 6.5633 -2.4015 2.0564 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705961180.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:19 Heat of formation + Delta-G solvation = -105.412398 kcal Electronic energy + Delta-G solvation = -20820.857783 eV Core-core repulsion = 17893.235130 eV Total energy + Delta-G solvation = -2927.622653 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.61186 -37.98124 -33.51864 -33.34186 -31.64218 -30.91786 -29.28062 -27.53504 -25.10219 -24.87070 -23.84942 -22.09532 -19.98763 -19.62828 -18.78951 -16.70212 -15.93923 -15.46902 -14.88475 -14.44921 -14.34325 -14.12268 -13.86418 -13.14862 -13.06745 -12.61083 -12.37864 -12.23870 -12.02210 -11.51944 -11.26930 -11.10992 -11.07937 -10.92410 -10.83094 -10.62047 -10.58327 -10.39901 -10.21020 -10.08497 -9.98645 -9.63825 -9.27220 -9.02593 -8.95528 -8.43880 -7.83606 -5.90701 -4.06519 3.32984 3.37889 3.40471 3.98481 4.45191 4.97393 5.02093 5.08147 5.17252 5.29764 5.47177 5.54426 5.59825 5.70938 5.74167 5.80183 5.93328 5.98182 6.08300 6.14838 6.15506 6.26117 6.31132 6.34765 6.51717 6.54064 6.63285 6.68601 6.79038 6.83048 6.89875 6.99797 7.10350 7.20427 7.41579 7.67005 7.82805 8.16105 8.44085 8.69924 9.10893 9.64078 11.10777 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.023162 B = 0.007672 C = 0.006808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.605157 B = 3648.692958 C = 4112.031033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.231 3.769 3 C -0.530 4.530 4 H 0.057 0.943 5 C 0.081 3.919 6 N -0.861 5.861 7 Si 0.885 3.115 8 H -0.277 1.277 9 H -0.287 1.287 10 H -0.277 1.277 11 C -0.144 4.144 12 C -0.128 4.128 13 C 0.111 3.889 14 C -0.154 4.154 15 C 0.105 3.895 16 H 0.062 0.938 17 C -0.146 4.146 18 C -0.123 4.123 19 C -0.154 4.154 20 C 0.063 3.937 21 O -0.377 6.377 22 O -0.339 6.339 23 H 0.011 0.989 24 H 0.090 0.910 25 H 0.034 0.966 26 H 0.259 0.741 27 H 0.066 0.934 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.175 -9.728 0.885 11.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.194 3.806 3 C -0.568 4.568 4 H 0.075 0.925 5 C -0.124 4.124 6 N -0.497 5.497 7 Si 0.713 3.287 8 H -0.202 1.202 9 H -0.213 1.213 10 H -0.203 1.203 11 C -0.182 4.182 12 C -0.166 4.166 13 C 0.070 3.930 14 C -0.211 4.211 15 C 0.048 3.952 16 H 0.080 0.920 17 C -0.183 4.183 18 C -0.161 4.161 19 C -0.192 4.192 20 C -0.014 4.014 21 O -0.297 6.297 22 O -0.259 6.259 23 H 0.031 0.969 24 H 0.108 0.892 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.105 0.895 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.983 -9.696 1.097 11.446 hybrid contribution 0.515 1.058 0.160 1.188 sum 6.498 -8.638 1.256 10.882 Atomic orbital electron populations 1.22012 0.97554 0.97622 1.02567 1.19615 0.90749 0.90246 0.80020 1.21217 1.32305 0.94707 1.08556 0.92508 1.24982 0.94232 0.97931 0.95208 1.69940 1.34351 1.35057 1.10371 0.86796 0.79385 0.85160 0.77381 1.20245 1.21272 1.20301 1.23229 0.96395 0.98382 1.00171 1.23000 0.98631 0.99227 0.95733 1.21782 0.89810 0.89163 0.92215 1.22204 0.99716 0.97520 1.01681 1.22036 0.90806 0.89964 0.92412 0.92002 1.22200 0.97729 1.02730 0.95687 1.21615 0.97079 0.98711 0.98662 1.22181 1.00001 0.99658 0.97369 1.22473 0.87987 0.99744 0.91231 1.87855 1.34486 1.58819 1.48491 1.88739 1.68511 1.36199 1.32429 0.96947 0.89184 0.94675 0.93117 0.91555 0.93137 0.91393 0.92017 0.92522 0.92802 0.92611 0.91265 0.89715 0.91984 0.92046 0.91375 0.91601 0.89503 0.93597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 8.52 37.15 0.32 -3.12 16 2 C 0.23 5.79 0.82 -91.05 -0.07 5.72 16 3 C -0.53 -14.60 8.23 -34.44 -0.28 -14.88 16 4 H 0.06 1.55 7.48 -52.49 -0.39 1.15 16 5 C 0.08 2.26 5.26 -17.82 -0.09 2.16 16 6 N -0.86 -24.58 10.92 55.43 0.61 -23.97 16 7 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 8 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 9 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 C -0.14 -3.09 5.69 -24.78 -0.14 -3.23 16 12 C -0.13 -2.57 5.62 -24.48 -0.14 -2.71 16 13 C 0.11 2.29 0.67 -89.59 -0.06 2.23 16 14 C -0.15 -2.82 8.21 37.15 0.30 -2.52 16 15 C 0.11 1.97 2.16 -26.68 -0.06 1.91 16 16 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 17 C -0.15 -2.48 4.87 -26.59 -0.13 -2.61 16 18 C -0.12 -1.70 6.03 -26.55 -0.16 -1.86 16 19 C -0.15 -1.86 6.14 -26.59 -0.16 -2.03 16 20 C 0.06 0.83 6.84 37.20 0.25 1.09 16 21 O -0.38 -6.37 9.62 -35.23 -0.34 -6.70 16 22 O -0.34 -8.54 9.38 -35.23 -0.33 -8.87 16 23 H 0.01 0.26 8.01 -51.93 -0.42 -0.15 16 24 H 0.09 2.45 6.01 -51.93 -0.31 2.14 16 25 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 27 H 0.07 1.40 7.60 -51.93 -0.39 1.01 16 28 H 0.05 1.00 7.49 -51.93 -0.39 0.61 16 29 H 0.07 1.41 8.06 -51.93 -0.42 0.99 16 30 H 0.06 1.11 8.03 -51.93 -0.42 0.69 16 31 H 0.06 1.01 6.36 -51.93 -0.33 0.68 16 32 H 0.05 1.00 7.35 -51.93 -0.38 0.62 16 33 H 0.05 0.93 7.94 -51.93 -0.41 0.52 16 34 H 0.07 1.13 6.26 -51.93 -0.33 0.81 16 35 H 0.08 1.63 8.06 -51.93 -0.42 1.21 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 311.93 15.07 4.70 4.70 Total: -1.00 -28.97 311.93 -7.93 -36.90 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -7.12 Total: 1.56 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: -0.42 Total: -19.85 kcal Atomic # 7 Polarization: -24.58 SS G_CDS: 0.61 Total: -23.97 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.67 Total: -15.57 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.97 -7.93 -36.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705961180.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.512 kcal (2) G-P(sol) polarization free energy of solvation -28.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds