Wall clock time and date at job start Mon Mar 30 2020 06:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50701 * 109.82086 * 2 1 4 4 H 1.08002 * 119.99761 * 239.10917 * 3 2 1 5 5 C 1.37871 * 119.99694 * 59.39480 * 3 2 1 6 6 N 1.31514 * 120.00482 * 359.71466 * 5 3 2 7 7 Si 1.86801 * 119.99746 * 179.72062 * 5 3 2 8 8 H 1.48494 * 109.47230 * 359.97438 * 7 5 3 9 9 H 1.48505 * 109.47301 * 119.99669 * 7 5 3 10 10 H 1.48498 * 109.47430 * 239.99516 * 7 5 3 11 11 C 1.54388 * 109.82820 * 239.11620 * 2 1 3 12 12 C 1.55305 * 102.24890 * 219.04002 * 11 2 1 13 13 C 1.54944 * 100.94636 * 34.13408 * 12 11 2 14 14 C 1.52995 * 110.31010 * 82.46634 * 13 12 11 15 15 C 1.53003 * 110.31165 * 204.64345 * 13 12 11 16 16 C 1.53000 * 109.46990 * 184.99985 * 15 13 12 17 17 H 1.08998 * 110.75299 * 57.01736 * 16 15 13 18 18 C 1.55306 * 110.84655 * 180.71242 * 16 15 13 19 19 C 1.54944 * 100.94312 * 152.32317 * 18 16 15 20 20 O 1.43653 * 105.13316 * 323.55459 * 19 18 16 21 21 C 1.43235 * 109.97296 * 24.42991 * 20 19 18 22 22 O 1.43232 * 109.90404 * 120.93993 * 2 1 3 23 23 H 1.09001 * 109.47136 * 60.70159 * 1 2 3 24 24 H 1.09000 * 109.46797 * 180.69820 * 1 2 3 25 25 H 1.08999 * 109.47136 * 300.69951 * 1 2 3 26 26 H 0.96995 * 120.00207 * 179.97438 * 6 5 3 27 27 H 1.08999 * 110.84887 * 337.22603 * 11 2 1 28 28 H 1.08997 * 110.84702 * 100.84698 * 11 2 1 29 29 H 1.08994 * 111.12303 * 152.05573 * 12 11 2 30 30 H 1.09002 * 111.12235 * 276.17106 * 12 11 2 31 31 H 1.09009 * 109.46955 * 60.70694 * 14 13 12 32 32 H 1.09002 * 109.47188 * 180.70330 * 14 13 12 33 33 H 1.08993 * 109.47471 * 300.70536 * 14 13 12 34 34 H 1.09002 * 109.46468 * 305.00021 * 15 13 12 35 35 H 1.09000 * 109.46883 * 64.99535 * 15 13 12 36 36 H 1.09005 * 111.12340 * 270.24375 * 18 16 15 37 37 H 1.09000 * 111.12228 * 34.40253 * 18 16 15 38 38 H 1.09002 * 110.31099 * 204.64083 * 19 18 16 39 39 H 1.08996 * 110.31017 * 82.46648 * 19 18 16 40 40 H 1.08994 * 109.82785 * 238.77663 * 21 20 19 41 41 H 1.08998 * 109.90902 * 117.84206 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0411 1.4177 0.0000 4 1 2.6759 1.7629 -0.8027 5 6 1.7029 2.2723 1.0277 6 7 0.9298 1.8520 2.0051 7 14 2.3427 4.0273 1.0317 8 1 3.1860 4.2495 -0.1701 9 1 1.1969 4.9720 1.0145 10 1 3.1541 4.2557 2.2543 11 6 2.0538 -0.7455 -1.2464 12 6 3.2744 -1.5197 -0.6786 13 6 2.7777 -1.8432 0.7530 14 6 1.8884 -3.0880 0.7380 15 6 3.9666 -2.0496 1.6937 16 6 3.4588 -2.4892 3.0684 17 1 2.8584 -3.3952 2.9868 18 6 4.6407 -2.6910 4.0556 19 6 3.9459 -2.4002 5.4096 20 8 3.0118 -1.3445 5.1327 21 6 2.6562 -1.3573 3.7453 22 8 2.0177 -0.6924 1.1551 23 1 -0.3633 0.5029 -0.8962 24 1 -0.3633 -1.0276 0.0125 25 1 -0.3633 0.5247 0.8836 26 1 0.6923 2.4532 2.7283 27 1 1.3018 -1.4347 -1.6306 28 1 2.3657 -0.0409 -2.0173 29 1 3.4594 -2.4320 -1.2457 30 1 4.1629 -0.8887 -0.6537 31 1 2.4614 -3.9395 0.3705 32 1 1.5369 -3.2956 1.7486 33 1 1.0335 -2.9160 0.0841 34 1 4.6231 -2.8183 1.2860 35 1 4.5187 -1.1149 1.7920 36 1 5.0140 -3.7144 4.0173 37 1 5.4402 -1.9757 3.8626 38 1 4.6781 -2.0735 6.1481 39 1 3.4204 -3.2872 5.7634 40 1 2.9103 -0.4003 3.2897 41 1 1.5881 -1.5460 3.6376 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709768306.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:42 Heat of formation + Delta-G solvation = -120.632104 kcal Electronic energy + Delta-G solvation = -20874.845876 eV Core-core repulsion = 17946.563248 eV Total energy + Delta-G solvation = -2928.282629 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.92174 -39.79123 -35.90665 -34.21705 -32.68202 -32.21480 -30.29820 -29.09552 -27.35215 -27.06620 -24.33756 -23.20835 -21.58607 -21.36358 -20.08728 -18.59092 -17.63349 -16.73863 -16.59215 -16.17029 -15.90841 -15.57655 -14.95961 -14.68593 -14.34229 -13.99317 -13.92117 -13.75963 -13.28724 -13.20210 -12.89198 -12.80463 -12.61805 -12.52870 -12.42475 -12.26139 -12.12159 -11.94303 -11.82247 -11.59068 -11.49927 -11.10478 -10.81879 -10.80056 -10.50866 -10.36255 -9.58300 -7.95872 -6.17100 1.37617 1.41369 1.49945 2.45206 3.07906 3.18151 3.57185 3.61375 3.82345 4.03586 4.10199 4.25443 4.31463 4.42090 4.50667 4.53655 4.58501 4.72012 4.78322 4.83960 4.87065 4.93692 4.98238 5.02866 5.08352 5.10588 5.13022 5.18199 5.21559 5.32657 5.32822 5.44050 5.50543 5.61165 5.70322 5.76200 6.18172 6.22682 6.44341 6.77067 7.30052 7.58826 9.02923 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.018290 B = 0.009310 C = 0.007203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.496354 B = 3006.692264 C = 3886.141520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.218 3.782 3 C -0.544 4.544 4 H 0.048 0.952 5 C 0.038 3.962 6 N -0.881 5.881 7 Si 0.936 3.064 8 H -0.268 1.268 9 H -0.281 1.281 10 H -0.288 1.288 11 C -0.138 4.138 12 C -0.130 4.130 13 C 0.082 3.918 14 C -0.152 4.152 15 C -0.089 4.089 16 C -0.108 4.108 17 H 0.096 0.904 18 C -0.143 4.143 19 C 0.040 3.960 20 O -0.425 6.425 21 C 0.077 3.923 22 O -0.363 6.363 23 H 0.033 0.967 24 H 0.026 0.974 25 H 0.057 0.943 26 H 0.253 0.747 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.043 0.957 34 H 0.100 0.900 35 H 0.045 0.955 36 H 0.113 0.887 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.049 0.951 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.706 -12.399 -0.105 14.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.180 3.820 3 C -0.582 4.582 4 H 0.066 0.934 5 C -0.164 4.164 6 N -0.518 5.518 7 Si 0.763 3.237 8 H -0.193 1.193 9 H -0.207 1.207 10 H -0.215 1.215 11 C -0.176 4.176 12 C -0.168 4.168 13 C 0.042 3.958 14 C -0.210 4.210 15 C -0.126 4.126 16 C -0.126 4.126 17 H 0.114 0.886 18 C -0.180 4.180 19 C -0.036 4.036 20 O -0.345 6.345 21 C 0.001 3.999 22 O -0.283 6.283 23 H 0.052 0.948 24 H 0.045 0.955 25 H 0.076 0.924 26 H 0.062 0.938 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.118 0.882 35 H 0.064 0.936 36 H 0.132 0.868 37 H 0.091 0.909 38 H 0.111 0.889 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.490 -12.133 0.407 13.766 hybrid contribution -0.063 1.416 -0.224 1.435 sum 6.427 -10.717 0.183 12.498 Atomic orbital electron populations 1.21910 0.98435 0.97830 1.00913 1.19589 0.90331 0.89906 0.82159 1.21602 1.31885 0.96844 1.07887 0.93385 1.25583 0.94686 1.00960 0.95205 1.70087 1.35496 1.35643 1.10609 0.85875 0.78303 0.81875 0.77691 1.19254 1.20705 1.21457 1.23092 0.97539 0.98443 0.98530 1.23109 0.97552 1.00141 0.95962 1.22430 0.91684 0.88396 0.93255 1.22204 0.99764 0.97362 1.01621 1.21564 0.96416 1.01136 0.93516 1.22692 0.96626 0.97963 0.95349 0.88581 1.23326 0.97322 1.04167 0.93213 1.23599 0.91383 0.90500 0.98082 1.88362 1.64434 1.54494 1.27260 1.22916 0.97938 0.99406 0.79636 1.88731 1.69730 1.38044 1.31832 0.94766 0.95549 0.92430 0.93750 0.91662 0.92263 0.88835 0.92213 0.89788 0.92778 0.93740 0.88168 0.93573 0.86843 0.90852 0.88919 0.91111 0.93280 0.94077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.54 8.52 71.98 0.61 -5.93 16 2 C 0.22 10.64 0.82 -11.07 -0.01 10.63 16 3 C -0.54 -29.98 8.22 25.60 0.21 -29.77 16 4 H 0.05 2.64 7.48 -2.91 -0.02 2.62 16 5 C 0.04 2.14 5.26 84.65 0.45 2.59 16 6 N -0.88 -51.83 10.92 21.45 0.23 -51.60 16 7 Si 0.94 44.84 29.54 68.60 2.03 46.87 16 8 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 9 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 10 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 11 C -0.14 -5.48 5.69 31.86 0.18 -5.30 16 12 C -0.13 -4.40 6.05 32.05 0.19 -4.20 16 13 C 0.08 2.94 0.84 -10.13 -0.01 2.93 16 14 C -0.15 -4.58 8.36 71.98 0.60 -3.98 16 15 C -0.09 -2.76 4.09 30.60 0.13 -2.63 16 16 C -0.11 -3.24 2.55 -9.53 -0.02 -3.26 16 17 H 0.10 2.58 6.28 -2.39 -0.01 2.57 16 18 C -0.14 -3.39 6.62 32.05 0.21 -3.18 16 19 C 0.04 1.08 7.78 72.65 0.56 1.64 16 20 O -0.42 -16.79 11.36 -148.98 -1.69 -18.48 16 21 C 0.08 3.18 6.00 72.45 0.43 3.61 16 22 O -0.36 -17.33 7.20 -148.98 -1.07 -18.41 16 23 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.03 1.15 7.95 -2.39 -0.02 1.13 16 25 H 0.06 3.20 6.03 -2.39 -0.01 3.19 16 26 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 27 H 0.06 2.34 7.52 -2.39 -0.02 2.32 16 28 H 0.06 2.37 7.60 -2.39 -0.02 2.36 16 29 H 0.09 2.46 8.03 -2.39 -0.02 2.44 16 30 H 0.06 2.12 8.06 -2.39 -0.02 2.11 16 31 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.05 1.65 6.27 -2.39 -0.01 1.64 16 33 H 0.04 1.43 7.32 -2.39 -0.02 1.41 16 34 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.05 1.67 8.07 -2.39 -0.02 1.65 16 36 H 0.11 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.07 1.80 8.04 -2.39 -0.02 1.78 16 38 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.05 2.48 6.83 -2.39 -0.02 2.46 16 41 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -65.31 311.92 4.02 -61.29 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.98 Total: 17.18 kcal Atomic # 6 Polarization: -40.39 SS G_CDS: 3.54 Total: -36.85 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: 0.23 Total: -51.60 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -2.76 Total: -36.89 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -65.31 4.02 -61.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709768306.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.343 kcal (2) G-P(sol) polarization free energy of solvation -65.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds