Wall clock time and date at job start Mon Mar 30 2020 06:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.82312 * 2 1 4 4 H 1.08002 * 120.00111 * 239.29642 * 3 2 1 5 5 C 1.37871 * 120.00215 * 59.29946 * 3 2 1 6 6 N 1.31517 * 119.99928 * 359.97438 * 5 3 2 7 7 Si 1.86804 * 120.00326 * 179.97438 * 5 3 2 8 8 H 1.48499 * 109.46625 * 0.02562 * 7 5 3 9 9 H 1.48500 * 109.46998 * 119.99987 * 7 5 3 10 10 H 1.48500 * 109.47038 * 239.99874 * 7 5 3 11 11 C 1.54384 * 109.83078 * 239.02106 * 2 1 3 12 12 C 1.55301 * 102.25302 * 219.13270 * 11 2 1 13 13 C 1.54949 * 100.94581 * 34.12876 * 12 11 2 14 14 C 1.53002 * 110.30415 * 82.47191 * 13 12 11 15 15 C 1.52997 * 110.39599 * 204.59747 * 13 12 11 16 16 C 1.52997 * 109.46937 * 58.70106 * 15 13 12 17 17 H 1.09003 * 110.80479 * 310.24638 * 16 15 13 18 18 C 1.54815 * 110.90857 * 186.62337 * 16 15 13 19 19 C 1.54101 * 104.18502 * 220.91977 * 18 16 15 20 20 O 1.43737 * 107.29742 * 357.96807 * 19 18 16 21 21 C 1.44421 * 107.00122 * 26.48774 * 20 19 18 22 22 O 1.43241 * 109.82934 * 120.88671 * 2 1 3 23 23 H 1.09000 * 109.47017 * 300.56632 * 1 2 3 24 24 H 1.08999 * 109.47175 * 60.56688 * 1 2 3 25 25 H 1.09004 * 109.46966 * 180.56718 * 1 2 3 26 26 H 0.97002 * 119.99874 * 179.97438 * 6 5 3 27 27 H 1.09005 * 110.84692 * 337.31585 * 11 2 1 28 28 H 1.08992 * 110.84829 * 100.94180 * 11 2 1 29 29 H 1.08999 * 111.12576 * 276.21336 * 12 11 2 30 30 H 1.08997 * 111.16582 * 152.06487 * 12 11 2 31 31 H 1.08994 * 109.47691 * 298.72368 * 14 13 12 32 32 H 1.08994 * 109.47645 * 58.72909 * 14 13 12 33 33 H 1.09003 * 109.46919 * 178.72866 * 14 13 12 34 34 H 1.09002 * 109.46783 * 178.69275 * 15 13 12 35 35 H 1.08997 * 109.47366 * 298.69259 * 15 13 12 36 36 H 1.09005 * 110.48145 * 339.59482 * 18 16 15 37 37 H 1.08994 * 110.49024 * 102.23943 * 18 16 15 38 38 H 1.08998 * 109.87575 * 117.39634 * 19 18 16 39 39 H 1.08998 * 109.87660 * 238.38736 * 19 18 16 40 40 H 1.08999 * 110.65227 * 201.48714 * 21 20 19 41 41 H 1.09004 * 110.60244 * 78.47096 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4177 0.0000 4 1 2.6734 1.7637 -0.8042 5 6 1.7014 2.2729 1.0266 6 7 0.9309 1.8517 2.0057 7 14 2.3354 4.0301 1.0270 8 1 3.1756 4.2533 -0.1769 9 1 1.1866 4.9708 1.0097 10 1 3.1475 4.2630 2.2483 11 6 2.0537 -0.7475 -1.2451 12 6 3.2730 -1.5227 -0.6755 13 6 2.7747 -1.8438 0.7561 14 6 1.8839 -3.0877 0.7417 15 6 3.9612 -2.0523 1.6993 16 6 4.8273 -0.7912 1.7157 17 1 5.0572 -0.4662 0.7010 18 6 6.1243 -1.0223 2.5288 19 6 6.3084 0.2838 3.3255 20 8 5.2419 1.1697 2.9462 21 6 4.1384 0.3426 2.5170 22 8 2.0159 -0.6917 1.1564 23 1 -0.3633 0.5226 0.8849 24 1 -0.3633 0.5050 -0.8950 25 1 -0.3633 -1.0277 0.0102 26 1 0.6922 2.4533 2.7282 27 1 1.3012 -1.4363 -1.6291 28 1 2.3672 -0.0442 -2.0165 29 1 4.1620 -0.8927 -0.6499 30 1 3.4579 -2.4359 -1.2412 31 1 1.0116 -2.9028 0.1148 32 1 2.4455 -3.9323 0.3428 33 1 1.5597 -3.3142 1.7575 34 1 3.5941 -2.2541 2.7057 35 1 4.5563 -2.8975 1.3534 36 1 6.0046 -1.8684 3.2056 37 1 6.9700 -1.1840 1.8604 38 1 6.2556 0.0765 4.3943 39 1 7.2710 0.7336 3.0825 40 1 3.4606 0.9076 1.8772 41 1 3.6065 -0.0639 3.3773 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709768310.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:45 Heat of formation + Delta-G solvation = -101.849588 kcal Electronic energy + Delta-G solvation = -21274.996349 eV Core-core repulsion = 18347.528191 eV Total energy + Delta-G solvation = -2927.468158 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.45811 -38.09444 -34.11751 -32.39883 -31.03717 -30.72013 -28.76600 -27.82362 -25.36926 -25.11498 -22.63172 -21.94315 -20.20393 -19.46939 -18.75567 -16.69513 -15.92800 -15.22863 -14.60090 -14.44004 -14.33715 -13.96491 -13.50771 -13.15700 -12.75755 -12.65379 -12.19802 -12.07434 -11.78522 -11.52770 -11.30973 -11.13558 -10.96607 -10.79980 -10.69954 -10.57343 -10.41231 -10.31807 -10.07026 -10.03129 -9.84133 -9.47936 -9.28501 -9.04131 -8.91001 -8.36946 -7.80848 -5.92232 -4.08088 3.36437 3.47594 3.48723 4.47983 4.68624 4.88398 5.05368 5.19956 5.40546 5.42260 5.54819 5.59906 5.69983 5.82969 5.90992 5.94615 6.03130 6.09389 6.13818 6.19321 6.23455 6.33306 6.39645 6.41926 6.53603 6.60069 6.69599 6.82513 6.86763 6.91022 6.97158 7.07620 7.18583 7.42107 7.53423 7.69617 7.82388 8.13954 8.42676 8.68797 9.09941 9.62124 11.07623 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.015483 B = 0.013323 C = 0.008259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.055634 B = 2101.121360 C = 3389.443625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.230 3.770 3 C -0.529 4.529 4 H 0.058 0.942 5 C 0.086 3.914 6 N -0.856 5.856 7 Si 0.875 3.125 8 H -0.273 1.273 9 H -0.286 1.286 10 H -0.277 1.277 11 C -0.142 4.142 12 C -0.143 4.143 13 C 0.097 3.903 14 C -0.156 4.156 15 C -0.093 4.093 16 C -0.112 4.112 17 H 0.085 0.915 18 C -0.155 4.155 19 C 0.046 3.954 20 O -0.387 6.387 21 C 0.048 3.952 22 O -0.338 6.338 23 H 0.090 0.910 24 H 0.033 0.967 25 H 0.010 0.990 26 H 0.259 0.741 27 H 0.048 0.952 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.045 0.955 39 H 0.070 0.930 40 H 0.154 0.846 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.959 -7.850 -0.916 9.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.193 3.807 3 C -0.567 4.567 4 H 0.076 0.924 5 C -0.120 4.120 6 N -0.493 5.493 7 Si 0.702 3.298 8 H -0.198 1.198 9 H -0.212 1.212 10 H -0.203 1.203 11 C -0.180 4.180 12 C -0.181 4.181 13 C 0.056 3.944 14 C -0.214 4.214 15 C -0.131 4.131 16 C -0.130 4.130 17 H 0.103 0.897 18 C -0.193 4.193 19 C -0.032 4.032 20 O -0.307 6.307 21 C -0.027 4.027 22 O -0.258 6.258 23 H 0.109 0.891 24 H 0.052 0.948 25 H 0.029 0.971 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.088 0.912 40 H 0.172 0.828 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.823 -7.502 -0.519 9.511 hybrid contribution 0.426 0.511 -0.139 0.680 sum 6.248 -6.991 -0.658 9.400 Atomic orbital electron populations 1.22031 0.97777 0.97452 1.02594 1.19587 0.90662 0.90392 0.80075 1.21243 1.32425 0.94658 1.08335 0.92405 1.24916 0.94110 0.97693 0.95258 1.69966 1.34149 1.34961 1.10190 0.86808 0.78831 0.85476 0.78639 1.19765 1.21177 1.20262 1.23187 0.96139 0.98333 1.00303 1.23253 0.99399 0.99297 0.96127 1.22055 0.90807 0.88909 0.92650 1.22189 1.00150 0.97318 1.01695 1.21538 0.95394 0.96243 0.99924 1.22691 0.93436 0.96603 1.00305 0.89721 1.23042 0.98889 0.98132 0.99239 1.23011 0.92185 0.90433 0.97559 1.88903 1.24867 1.31119 1.85773 1.24278 0.88462 0.92225 0.97729 1.88763 1.68964 1.36097 1.31987 0.89136 0.94800 0.97135 0.93078 0.93285 0.91603 0.90664 0.92593 0.92482 0.93395 0.92756 0.91888 0.92091 0.91390 0.91449 0.93643 0.91159 0.82829 0.93465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 8.52 37.16 0.32 -3.02 16 2 C 0.23 5.42 0.82 -91.05 -0.07 5.34 16 3 C -0.53 -13.77 7.08 -34.44 -0.24 -14.01 16 4 H 0.06 1.52 7.49 -52.49 -0.39 1.13 16 5 C 0.09 2.28 3.74 -17.82 -0.07 2.21 16 6 N -0.86 -23.48 10.92 55.43 0.61 -22.87 16 7 Si 0.88 21.31 29.54 -169.99 -5.02 16.29 16 8 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 9 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 11 C -0.14 -2.85 5.70 -24.79 -0.14 -2.99 16 12 C -0.14 -2.58 5.94 -24.48 -0.15 -2.72 16 13 C 0.10 1.81 0.91 -89.59 -0.08 1.73 16 14 C -0.16 -2.59 8.83 37.16 0.33 -2.27 16 15 C -0.09 -1.58 4.13 -26.73 -0.11 -1.69 16 16 C -0.11 -2.03 2.93 -88.61 -0.26 -2.29 16 17 H 0.08 1.61 5.81 -51.93 -0.30 1.30 16 18 C -0.16 -2.33 6.60 -25.20 -0.17 -2.49 16 19 C 0.05 0.75 7.70 37.73 0.29 1.04 16 20 O -0.39 -8.48 11.52 -35.23 -0.41 -8.88 16 21 C 0.05 1.06 5.93 38.21 0.23 1.29 16 22 O -0.34 -7.87 7.10 -35.23 -0.25 -8.12 16 23 H 0.09 2.38 6.03 -51.93 -0.31 2.07 16 24 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.01 0.21 7.87 -51.93 -0.41 -0.20 16 26 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 27 H 0.05 0.92 7.56 -51.93 -0.39 0.52 16 28 H 0.07 1.32 7.61 -51.93 -0.40 0.93 16 29 H 0.07 1.39 5.73 -51.93 -0.30 1.10 16 30 H 0.06 0.87 8.03 -51.93 -0.42 0.45 16 31 H 0.06 0.99 7.29 -51.93 -0.38 0.61 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 1.08 7.94 -51.93 -0.41 0.67 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.91 7.86 -51.93 -0.41 0.50 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.15 3.91 3.86 -51.93 -0.20 3.71 16 41 H 0.05 1.08 7.91 -51.93 -0.41 0.66 16 LS Contribution 305.51 15.07 4.60 4.60 Total: -1.00 -27.78 305.51 -7.42 -35.20 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -6.82 Total: 3.64 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: -0.13 Total: -19.86 kcal Atomic # 7 Polarization: -23.48 SS G_CDS: 0.61 Total: -22.87 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.66 Total: -17.00 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.78 -7.42 -35.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709768310.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.648 kcal (2) G-P(sol) polarization free energy of solvation -27.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds