Wall clock time and date at job start Mon Mar 30 2020 06:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.82312 * 2 1 4 4 H 1.08002 * 120.00111 * 239.29642 * 3 2 1 5 5 C 1.37871 * 120.00215 * 59.29946 * 3 2 1 6 6 N 1.31517 * 119.99928 * 359.97438 * 5 3 2 7 7 Si 1.86804 * 120.00326 * 179.97438 * 5 3 2 8 8 H 1.48499 * 109.46625 * 0.02562 * 7 5 3 9 9 H 1.48500 * 109.46998 * 119.99987 * 7 5 3 10 10 H 1.48500 * 109.47038 * 239.99874 * 7 5 3 11 11 C 1.54384 * 109.83078 * 239.02106 * 2 1 3 12 12 C 1.55301 * 102.25302 * 219.13270 * 11 2 1 13 13 C 1.54949 * 100.94581 * 34.12876 * 12 11 2 14 14 C 1.53002 * 110.30415 * 82.47191 * 13 12 11 15 15 C 1.52997 * 110.39599 * 204.59747 * 13 12 11 16 16 C 1.52997 * 109.46937 * 58.70106 * 15 13 12 17 17 H 1.09003 * 110.80479 * 310.24638 * 16 15 13 18 18 C 1.54815 * 110.90857 * 186.62337 * 16 15 13 19 19 C 1.54101 * 104.18502 * 220.91977 * 18 16 15 20 20 O 1.43737 * 107.29742 * 357.96807 * 19 18 16 21 21 C 1.44421 * 107.00122 * 26.48774 * 20 19 18 22 22 O 1.43241 * 109.82934 * 120.88671 * 2 1 3 23 23 H 1.09000 * 109.47017 * 300.56632 * 1 2 3 24 24 H 1.08999 * 109.47175 * 60.56688 * 1 2 3 25 25 H 1.09004 * 109.46966 * 180.56718 * 1 2 3 26 26 H 0.97002 * 119.99874 * 179.97438 * 6 5 3 27 27 H 1.09005 * 110.84692 * 337.31585 * 11 2 1 28 28 H 1.08992 * 110.84829 * 100.94180 * 11 2 1 29 29 H 1.08999 * 111.12576 * 276.21336 * 12 11 2 30 30 H 1.08997 * 111.16582 * 152.06487 * 12 11 2 31 31 H 1.08994 * 109.47691 * 298.72368 * 14 13 12 32 32 H 1.08994 * 109.47645 * 58.72909 * 14 13 12 33 33 H 1.09003 * 109.46919 * 178.72866 * 14 13 12 34 34 H 1.09002 * 109.46783 * 178.69275 * 15 13 12 35 35 H 1.08997 * 109.47366 * 298.69259 * 15 13 12 36 36 H 1.09005 * 110.48145 * 339.59482 * 18 16 15 37 37 H 1.08994 * 110.49024 * 102.23943 * 18 16 15 38 38 H 1.08998 * 109.87575 * 117.39634 * 19 18 16 39 39 H 1.08998 * 109.87660 * 238.38736 * 19 18 16 40 40 H 1.08999 * 110.65227 * 201.48714 * 21 20 19 41 41 H 1.09004 * 110.60244 * 78.47096 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4177 0.0000 4 1 2.6734 1.7637 -0.8042 5 6 1.7014 2.2729 1.0266 6 7 0.9309 1.8517 2.0057 7 14 2.3354 4.0301 1.0270 8 1 3.1756 4.2533 -0.1769 9 1 1.1866 4.9708 1.0097 10 1 3.1475 4.2630 2.2483 11 6 2.0537 -0.7475 -1.2451 12 6 3.2730 -1.5227 -0.6755 13 6 2.7747 -1.8438 0.7561 14 6 1.8839 -3.0877 0.7417 15 6 3.9612 -2.0523 1.6993 16 6 4.8273 -0.7912 1.7157 17 1 5.0572 -0.4662 0.7010 18 6 6.1243 -1.0223 2.5288 19 6 6.3084 0.2838 3.3255 20 8 5.2419 1.1697 2.9462 21 6 4.1384 0.3426 2.5170 22 8 2.0159 -0.6917 1.1564 23 1 -0.3633 0.5226 0.8849 24 1 -0.3633 0.5050 -0.8950 25 1 -0.3633 -1.0277 0.0102 26 1 0.6922 2.4533 2.7282 27 1 1.3012 -1.4363 -1.6291 28 1 2.3672 -0.0442 -2.0165 29 1 4.1620 -0.8927 -0.6499 30 1 3.4579 -2.4359 -1.2412 31 1 1.0116 -2.9028 0.1148 32 1 2.4455 -3.9323 0.3428 33 1 1.5597 -3.3142 1.7575 34 1 3.5941 -2.2541 2.7057 35 1 4.5563 -2.8975 1.3534 36 1 6.0046 -1.8684 3.2056 37 1 6.9700 -1.1840 1.8604 38 1 6.2556 0.0765 4.3943 39 1 7.2710 0.7336 3.0825 40 1 3.4606 0.9076 1.8772 41 1 3.6065 -0.0639 3.3773 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709768310.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:45 Heat of formation + Delta-G solvation = -117.899120 kcal Electronic energy + Delta-G solvation = -21275.692309 eV Core-core repulsion = 18347.528191 eV Total energy + Delta-G solvation = -2928.164118 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.98111 -39.63982 -35.79693 -34.16055 -32.63780 -32.32791 -30.17293 -29.42453 -27.12387 -26.81051 -24.21529 -23.35431 -21.64132 -21.16600 -20.25891 -18.55983 -17.39268 -16.72975 -16.53420 -15.97092 -15.91574 -15.53979 -15.06456 -14.66500 -14.35968 -14.28400 -13.75054 -13.53513 -13.30810 -13.10479 -12.86551 -12.82182 -12.71237 -12.44382 -12.32355 -12.16006 -12.08334 -11.93067 -11.84324 -11.48876 -11.40778 -10.95548 -10.85509 -10.77207 -10.51042 -10.35495 -9.55334 -7.96047 -6.14317 1.36732 1.45595 1.48736 2.46065 3.16436 3.27013 3.60194 3.72041 3.92376 4.07745 4.15534 4.24505 4.30493 4.37634 4.51592 4.59252 4.64123 4.78019 4.83658 4.89476 4.90445 4.94250 4.95717 5.03653 5.06883 5.15957 5.17769 5.22439 5.23187 5.38455 5.45090 5.52690 5.61162 5.68666 5.76859 5.79141 6.17799 6.20449 6.47299 6.78289 7.30455 7.59690 9.02267 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.015483 B = 0.013323 C = 0.008259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.055634 B = 2101.121360 C = 3389.443625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.223 3.777 3 C -0.532 4.532 4 H 0.047 0.953 5 C 0.055 3.945 6 N -0.877 5.877 7 Si 0.914 3.086 8 H -0.270 1.270 9 H -0.280 1.280 10 H -0.291 1.291 11 C -0.140 4.140 12 C -0.134 4.134 13 C 0.082 3.918 14 C -0.150 4.150 15 C -0.088 4.088 16 C -0.107 4.107 17 H 0.075 0.925 18 C -0.143 4.143 19 C 0.033 3.967 20 O -0.423 6.423 21 C 0.046 3.954 22 O -0.365 6.365 23 H 0.059 0.941 24 H 0.034 0.966 25 H 0.025 0.975 26 H 0.254 0.746 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.045 0.955 32 H 0.082 0.918 33 H 0.049 0.951 34 H 0.056 0.944 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.056 0.944 39 H 0.091 0.909 40 H 0.119 0.881 41 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.700 -10.115 -1.688 12.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.185 3.815 3 C -0.570 4.570 4 H 0.065 0.935 5 C -0.148 4.148 6 N -0.515 5.515 7 Si 0.741 3.259 8 H -0.194 1.194 9 H -0.206 1.206 10 H -0.218 1.218 11 C -0.177 4.177 12 C -0.171 4.171 13 C 0.042 3.958 14 C -0.208 4.208 15 C -0.125 4.125 16 C -0.125 4.125 17 H 0.093 0.907 18 C -0.180 4.180 19 C -0.043 4.043 20 O -0.343 6.343 21 C -0.029 4.029 22 O -0.285 6.285 23 H 0.078 0.922 24 H 0.053 0.947 25 H 0.044 0.956 26 H 0.063 0.937 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.065 0.935 32 H 0.100 0.900 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.117 0.883 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.075 0.925 39 H 0.109 0.891 40 H 0.137 0.863 41 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 7.569 -9.770 -1.304 12.427 hybrid contribution -0.084 1.222 0.125 1.231 sum 7.485 -8.548 -1.179 11.423 Atomic orbital electron populations 1.21936 0.98462 0.97865 1.01056 1.19538 0.90260 0.89785 0.81934 1.21480 1.31538 0.96467 1.07505 0.93513 1.25316 0.94446 0.99686 0.95331 1.70068 1.35440 1.35363 1.10609 0.86206 0.78349 0.83456 0.77851 1.19406 1.20632 1.21750 1.23101 0.97534 0.98475 0.98625 1.23215 0.97872 1.00243 0.95772 1.22440 0.91525 0.88330 0.93553 1.22128 0.99772 0.97322 1.01539 1.21547 0.94845 0.96750 0.99367 1.22603 0.94775 0.95652 0.99503 0.90652 1.23012 0.97937 0.97775 0.99307 1.23345 0.91435 0.90894 0.98633 1.88847 1.26043 1.33201 1.86195 1.24038 0.88712 0.93218 0.96945 1.88710 1.69744 1.37924 1.32097 0.92224 0.94726 0.95598 0.93652 0.91757 0.92201 0.91478 0.89106 0.93543 0.89958 0.93188 0.92483 0.88258 0.89289 0.88755 0.92535 0.89082 0.86278 0.95491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.46 8.52 71.98 0.61 -5.85 16 2 C 0.22 10.48 0.82 -11.07 -0.01 10.47 16 3 C -0.53 -28.22 7.08 25.60 0.18 -28.04 16 4 H 0.05 2.51 7.49 -2.91 -0.02 2.49 16 5 C 0.06 3.01 3.74 84.65 0.32 3.33 16 6 N -0.88 -49.88 10.92 21.45 0.23 -49.65 16 7 Si 0.91 44.94 29.54 68.60 2.03 46.96 16 8 H -0.27 -12.95 7.11 99.48 0.71 -12.25 16 9 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 10 H -0.29 -14.86 7.11 99.48 0.71 -14.15 16 11 C -0.14 -5.39 5.70 31.85 0.18 -5.21 16 12 C -0.13 -4.42 5.94 32.05 0.19 -4.23 16 13 C 0.08 2.87 0.91 -10.13 -0.01 2.86 16 14 C -0.15 -4.52 8.83 71.98 0.64 -3.88 16 15 C -0.09 -2.70 4.13 30.59 0.13 -2.57 16 16 C -0.11 -3.66 2.93 -9.49 -0.03 -3.69 16 17 H 0.08 2.73 5.81 -2.39 -0.01 2.72 16 18 C -0.14 -3.78 6.60 31.59 0.21 -3.57 16 19 C 0.03 1.04 7.70 72.35 0.56 1.59 16 20 O -0.42 -18.60 11.52 -148.98 -1.72 -20.31 16 21 C 0.05 2.07 5.93 72.66 0.43 2.50 16 22 O -0.36 -16.93 7.10 -148.98 -1.06 -17.98 16 23 H 0.06 3.22 6.03 -2.39 -0.01 3.20 16 24 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.03 1.10 7.87 -2.38 -0.02 1.08 16 26 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 27 H 0.06 2.26 7.56 -2.38 -0.02 2.24 16 28 H 0.06 2.34 7.61 -2.39 -0.02 2.33 16 29 H 0.07 2.33 5.73 -2.39 -0.01 2.32 16 30 H 0.09 2.37 8.03 -2.39 -0.02 2.35 16 31 H 0.05 1.48 7.29 -2.39 -0.02 1.46 16 32 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.06 1.83 7.94 -2.39 -0.02 1.81 16 35 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.09 2.00 7.86 -2.38 -0.02 1.98 16 37 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.12 6.25 3.86 -2.39 -0.01 6.24 16 41 H 0.03 1.27 7.91 -2.38 -0.02 1.25 16 Total: -1.00 -62.21 305.51 3.87 -58.33 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.99 Total: 18.94 kcal Atomic # 6 Polarization: -39.69 SS G_CDS: 3.40 Total: -36.29 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: 0.23 Total: -49.65 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -2.77 Total: -38.30 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -62.21 3.87 -58.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709768310.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.566 kcal (2) G-P(sol) polarization free energy of solvation -62.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds