Wall clock time and date at job start Mon Mar 30 2020 07:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47023 * 2 1 4 4 C 1.53000 * 109.47023 * 179.97438 * 3 2 1 5 5 H 1.08999 * 110.48985 * 52.30719 * 4 3 2 6 6 C 1.54611 * 110.54340 * 289.46892 * 4 3 2 7 7 O 1.44465 * 104.82586 * 265.26408 * 6 4 3 8 8 C 1.44540 * 105.35886 * 319.82590 * 7 6 4 9 9 C 1.53980 * 104.70449 * 40.04269 * 8 7 6 10 10 C 1.52474 * 110.20979 * 217.93433 * 9 8 7 11 11 C 1.53275 * 109.23400 * 293.39248 * 10 9 8 12 12 C 1.53184 * 108.97998 * 304.03461 * 11 10 9 13 13 C 1.53093 * 109.25270 * 57.46756 * 12 11 10 14 14 H 1.08999 * 109.48679 * 61.87793 * 13 12 11 15 15 C 1.50701 * 109.49021 * 181.92910 * 13 12 11 16 16 H 1.08002 * 119.99761 * 359.94999 * 15 13 12 17 17 C 1.37871 * 119.99694 * 180.23562 * 15 13 12 18 18 N 1.31523 * 119.99908 * 179.72112 * 17 15 13 19 19 Si 1.86800 * 120.00405 * 359.71709 * 17 15 13 20 20 H 1.48500 * 109.47210 * 90.00069 * 19 17 15 21 21 H 1.48504 * 109.47424 * 210.00300 * 19 17 15 22 22 H 1.48502 * 109.46888 * 330.00390 * 19 17 15 23 23 O 1.42203 * 110.36211 * 94.99795 * 9 8 7 24 24 H 1.08998 * 109.47286 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47504 * 299.99937 * 1 2 3 26 26 H 1.09007 * 109.46747 * 60.00165 * 1 2 3 27 27 H 1.09003 * 109.47260 * 239.99330 * 2 1 3 28 28 H 1.09007 * 109.46747 * 119.99835 * 2 1 3 29 29 H 1.08998 * 109.47432 * 60.00278 * 3 2 1 30 30 H 1.08995 * 109.47634 * 299.99616 * 3 2 1 31 31 H 1.09001 * 110.36255 * 24.10073 * 6 4 3 32 32 H 1.09003 * 110.36863 * 146.31822 * 6 4 3 33 33 H 1.08999 * 110.39066 * 281.23747 * 8 7 6 34 34 H 1.09003 * 110.39122 * 158.84826 * 8 7 6 35 35 H 1.08996 * 109.50836 * 53.31788 * 10 9 8 36 36 H 1.09002 * 109.51000 * 173.41491 * 10 9 8 37 37 H 1.09005 * 109.55978 * 63.86855 * 11 10 9 38 38 H 1.09000 * 109.56017 * 184.07254 * 11 10 9 39 39 H 1.08997 * 109.49048 * 297.54247 * 12 11 10 40 40 H 1.09005 * 109.52560 * 177.41137 * 12 11 10 41 41 H 0.96995 * 120.00181 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9518 0.8180 -0.8070 6 6 4.1119 0.9601 1.3660 7 8 4.3493 2.1705 2.1180 8 6 4.9116 3.1059 1.1703 9 6 4.1105 2.8791 -0.1250 10 6 5.0274 2.9924 -1.3380 11 6 5.5224 4.4376 -1.4636 12 6 4.3123 5.3742 -1.5348 13 6 3.4451 5.1741 -0.2892 14 1 4.0202 5.4330 0.5998 15 6 2.2283 6.0589 -0.3763 16 1 2.0875 6.7006 -1.2335 17 6 1.2978 6.0534 0.6412 18 7 0.2386 6.8297 0.5678 19 14 1.5414 4.9436 2.1238 20 1 2.3097 5.6711 3.1658 21 1 0.2179 4.5491 2.6697 22 1 2.2903 3.7283 1.7147 23 8 3.0356 3.8060 -0.2108 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9563 -0.8899 31 1 3.3713 0.3393 1.8701 32 1 5.0414 0.4068 1.2312 33 1 5.9676 2.8917 1.0062 34 1 4.7810 4.1289 1.5233 35 1 5.8802 2.3251 -1.2133 36 1 4.4772 2.7158 -2.2374 37 1 6.1297 4.6921 -0.5949 38 1 6.1198 4.5413 -2.3693 39 1 3.7277 5.1460 -2.4259 40 1 4.6542 6.4084 -1.5780 41 1 -0.4162 6.8256 1.2833 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710997468.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:52 Heat of formation + Delta-G solvation = -106.830226 kcal Electronic energy + Delta-G solvation = -21073.471629 eV Core-core repulsion = 18145.787494 eV Total energy + Delta-G solvation = -2927.684134 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.29880 -37.17263 -34.98832 -33.10119 -32.65249 -31.42927 -29.55603 -27.19279 -25.85945 -24.98672 -23.01001 -22.08067 -20.73068 -19.74826 -18.67737 -16.85322 -16.25846 -16.07539 -15.17892 -14.94490 -14.57704 -14.14124 -14.02644 -13.64543 -13.21659 -12.89902 -12.68553 -12.56913 -12.22948 -12.17951 -11.78659 -11.40378 -11.22905 -10.98920 -10.90436 -10.80697 -10.64901 -10.45089 -10.42447 -10.11464 -9.93773 -9.73949 -9.52734 -9.25111 -9.02599 -8.50376 -8.00603 -6.07933 -4.17426 3.45629 3.55363 3.82488 4.27115 4.56112 4.59996 4.82097 5.08453 5.14554 5.24637 5.29521 5.38215 5.40612 5.44185 5.51588 5.54921 5.68763 5.75990 5.80216 5.86777 5.95154 6.08050 6.08735 6.10839 6.14713 6.17717 6.24651 6.33131 6.43609 6.49058 6.61930 6.63122 6.70975 6.73970 6.92971 7.12499 7.18507 7.65809 8.44383 8.56706 8.93513 9.55770 11.01333 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.015740 B = 0.011771 C = 0.008888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.434255 B = 2378.080598 C = 3149.606918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.101 4.101 4 C -0.106 4.106 5 H 0.081 0.919 6 C 0.047 3.953 7 O -0.369 6.369 8 C 0.020 3.980 9 C 0.086 3.914 10 C -0.133 4.133 11 C -0.124 4.124 12 C -0.134 4.134 13 C 0.181 3.819 14 H 0.014 0.986 15 C -0.516 4.516 16 H 0.078 0.922 17 C 0.086 3.914 18 N -0.892 5.892 19 Si 0.855 3.145 20 H -0.290 1.290 21 H -0.296 1.296 22 H -0.197 1.197 23 O -0.348 6.348 24 H 0.047 0.953 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.096 0.904 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.313 -12.794 -1.581 15.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.139 4.139 4 C -0.125 4.125 5 H 0.100 0.900 6 C -0.030 4.030 7 O -0.287 6.287 8 C -0.057 4.057 9 C 0.045 3.955 10 C -0.170 4.170 11 C -0.162 4.162 12 C -0.172 4.172 13 C 0.126 3.874 14 H 0.031 0.969 15 C -0.553 4.553 16 H 0.096 0.904 17 C -0.119 4.119 18 N -0.529 5.529 19 Si 0.681 3.319 20 H -0.217 1.217 21 H -0.223 1.223 22 H -0.119 1.119 23 O -0.268 6.268 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.114 0.886 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.921 -12.758 -1.286 15.072 hybrid contribution 0.308 -0.292 0.542 0.688 sum 8.229 -13.050 -0.744 15.445 Atomic orbital electron populations 1.21753 0.96055 1.00778 1.02312 1.21630 0.95918 0.97761 1.00975 1.21433 0.92775 0.95099 1.04568 1.22523 0.97936 0.94633 0.97390 0.90036 1.23525 0.99131 0.88452 0.91906 1.89149 1.83415 1.23335 1.32842 1.24085 0.96091 0.95185 0.90314 1.22106 0.89365 0.91136 0.92877 1.22016 0.98722 0.97339 0.98961 1.21688 0.98456 0.95092 1.00929 1.22058 0.95660 0.98363 1.01112 1.20236 0.95615 0.79582 0.91940 0.96876 1.20865 1.06076 1.21024 1.07321 0.90409 1.25046 0.94124 0.94070 0.98663 1.69936 1.10990 1.38331 1.33630 0.87348 0.78312 0.84952 0.81271 1.21713 1.22275 1.11895 1.88425 1.28537 1.16683 1.93140 0.93391 0.92703 0.92547 0.92617 0.92662 0.90729 0.90484 0.89299 0.93064 0.92706 0.88560 0.92235 0.91217 0.92579 0.92597 0.91898 0.91947 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 37.16 0.37 -1.60 16 2 C -0.13 -1.65 5.80 -26.73 -0.16 -1.80 16 3 C -0.10 -1.68 3.70 -26.73 -0.10 -1.78 16 4 C -0.11 -1.63 2.75 -89.24 -0.25 -1.88 16 5 H 0.08 1.07 7.71 -51.93 -0.40 0.67 16 6 C 0.05 0.69 7.05 38.00 0.27 0.96 16 7 O -0.37 -6.82 11.25 -35.23 -0.40 -7.21 16 8 C 0.02 0.35 5.40 37.67 0.20 0.56 16 9 C 0.09 1.52 0.93 -89.85 -0.08 1.44 16 10 C -0.13 -2.01 4.58 -26.86 -0.12 -2.13 16 11 C -0.12 -1.94 5.83 -26.49 -0.15 -2.10 16 12 C -0.13 -2.62 5.34 -26.59 -0.14 -2.76 16 13 C 0.18 4.20 1.74 -27.83 -0.05 4.16 16 14 H 0.01 0.32 5.64 -51.93 -0.29 0.03 16 15 C -0.52 -14.55 9.38 -34.44 -0.32 -14.87 16 16 H 0.08 2.36 7.99 -52.49 -0.42 1.94 16 17 C 0.09 2.51 5.47 -17.82 -0.10 2.41 16 18 N -0.89 -27.57 13.96 55.43 0.77 -26.80 16 19 Si 0.85 21.96 26.96 -169.99 -4.58 17.38 16 20 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 21 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 22 H -0.20 -4.75 3.01 56.52 0.17 -4.58 16 23 O -0.35 -7.64 5.04 -35.23 -0.18 -7.82 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.67 6.75 -51.93 -0.35 0.32 16 29 H 0.07 1.46 6.72 -51.93 -0.35 1.11 16 30 H 0.08 1.42 7.69 -51.93 -0.40 1.02 16 31 H 0.09 1.22 6.50 -51.93 -0.34 0.88 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.82 7.76 -51.93 -0.40 0.42 16 34 H 0.10 1.88 6.00 -51.93 -0.31 1.56 16 35 H 0.06 0.76 8.03 -51.93 -0.42 0.34 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.06 0.84 7.58 -51.93 -0.39 0.45 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.26 7.73 8.31 -40.82 -0.34 7.40 16 LS Contribution 302.27 15.07 4.56 4.56 Total: -1.00 -30.76 302.27 -7.70 -38.46 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -7.25 Total: 0.85 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -0.63 Total: -19.41 kcal Atomic # 7 Polarization: -27.57 SS G_CDS: 0.77 Total: -26.80 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.57 Total: -15.04 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.58 Total: 17.38 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.76 -7.70 -38.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710997468.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.365 kcal (2) G-P(sol) polarization free energy of solvation -30.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds