Wall clock time and date at job start Mon Mar 30 2020 07:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47346 * 2 1 4 4 C 1.53002 * 109.46862 * 119.99908 * 2 1 3 5 5 C 1.53005 * 109.46998 * 175.00022 * 4 2 1 6 6 H 1.08991 * 110.51821 * 54.34182 * 5 4 2 7 7 C 1.54741 * 110.70653 * 291.47208 * 5 4 2 8 8 O 1.44514 * 104.83972 * 217.57932 * 7 5 4 9 9 C 1.44675 * 105.46131 * 39.83222 * 8 7 5 10 10 C 1.53446 * 104.57758 * 320.50350 * 9 8 7 11 11 C 1.53907 * 110.80713 * 142.98791 * 10 9 8 12 12 C 1.55492 * 100.79430 * 86.77913 * 11 10 9 13 13 C 1.54475 * 102.36166 * 33.03910 * 12 11 10 14 14 H 1.09002 * 109.92017 * 98.20084 * 13 12 11 15 15 C 1.50698 * 109.83959 * 219.15307 * 13 12 11 16 16 H 1.08006 * 119.99753 * 359.55049 * 15 13 12 17 17 C 1.37871 * 120.00685 * 179.54978 * 15 13 12 18 18 N 1.31510 * 120.00300 * 179.97438 * 17 15 13 19 19 Si 1.86803 * 119.99799 * 0.02562 * 17 15 13 20 20 H 1.48503 * 109.47127 * 270.00102 * 19 17 15 21 21 H 1.48505 * 109.46869 * 30.00043 * 19 17 15 22 22 H 1.48501 * 109.47474 * 149.99666 * 19 17 15 23 23 O 1.42420 * 111.81655 * 261.71042 * 10 9 8 24 24 H 1.08998 * 109.47504 * 300.00123 * 1 2 3 25 25 H 1.09006 * 109.47268 * 60.00038 * 1 2 3 26 26 H 1.08998 * 109.47413 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47067 * 239.99573 * 2 1 3 28 28 H 1.08997 * 109.46840 * 300.00002 * 3 2 1 29 29 H 1.08998 * 109.46920 * 59.99519 * 3 2 1 30 30 H 1.08999 * 109.47130 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47026 * 55.00306 * 4 2 1 32 32 H 1.08995 * 109.47052 * 294.99885 * 4 2 1 33 33 H 1.08997 * 110.36567 * 336.42496 * 7 5 4 34 34 H 1.09001 * 110.35883 * 98.63398 * 7 5 4 35 35 H 1.08998 * 110.41413 * 201.73160 * 9 8 7 36 36 H 1.08997 * 110.41452 * 79.28034 * 9 8 7 37 37 H 1.08995 * 111.14703 * 204.66553 * 11 10 9 38 38 H 1.09003 * 111.14898 * 328.85354 * 11 10 9 39 39 H 1.08998 * 110.83056 * 274.81932 * 12 11 10 40 40 H 1.08997 * 110.82432 * 151.24817 * 12 11 10 41 41 H 0.96999 * 120.00209 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5648 -0.8311 1.1880 6 1 4.0130 0.1515 1.0412 7 6 3.9988 -1.8005 0.0628 8 8 5.1400 -2.5050 0.6009 9 6 4.8149 -2.7645 1.9865 10 6 4.1100 -1.4877 2.4635 11 6 2.9663 -1.8255 3.4363 12 6 3.7371 -1.8760 4.7858 13 6 4.8353 -0.8094 4.5794 14 1 4.5330 0.1295 5.0434 15 6 6.1306 -1.2851 5.1851 16 1 6.1761 -2.2456 5.6769 17 6 7.2577 -0.4944 5.1113 18 7 8.3879 -0.9094 5.6403 19 14 7.1789 1.1671 4.2613 20 1 7.5030 1.0024 2.8214 21 1 5.8114 1.7296 4.3997 22 1 8.1594 2.0904 4.8870 23 8 4.9981 -0.6235 3.1654 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.6767 1.9562 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 3.1300 1.4424 -0.0005 31 1 1.6053 -1.7198 1.2952 32 1 1.7515 -0.1583 2.1369 33 1 3.1947 -2.4999 -0.1665 34 1 4.2816 -1.2429 -0.8301 35 1 5.7230 -2.9359 2.5645 36 1 4.1453 -3.6208 2.0660 37 1 2.2113 -1.0394 3.4438 38 1 2.5216 -2.7923 3.2001 39 1 4.1778 -2.8604 4.9438 40 1 3.0844 -1.6046 5.6153 41 1 9.1809 -0.3533 5.5881 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716350760.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:18 Heat of formation + Delta-G solvation = -103.460742 kcal Electronic energy + Delta-G solvation = -20567.422030 eV Core-core repulsion = 17639.884008 eV Total energy + Delta-G solvation = -2927.538023 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.31641 -37.23527 -36.36178 -32.70549 -31.86692 -31.02896 -29.02149 -27.23438 -26.36428 -25.78435 -23.29993 -22.10888 -20.59632 -19.72593 -18.82331 -16.80460 -16.25842 -15.75044 -15.53112 -15.06701 -14.74794 -14.29707 -14.12843 -13.55682 -13.22522 -12.80187 -12.64827 -12.62974 -12.33479 -12.28881 -11.81278 -11.64539 -11.57951 -11.09423 -11.01666 -10.79792 -10.70262 -10.54689 -10.44924 -10.37141 -10.02300 -9.75023 -9.73864 -9.45970 -9.35858 -8.58463 -8.13959 -6.08450 -4.17453 3.43034 3.50342 3.60156 4.26232 4.47356 4.57667 4.76196 4.85875 4.91893 5.07704 5.13145 5.28720 5.34862 5.36315 5.43368 5.54600 5.56251 5.62978 5.70142 5.76080 5.83718 5.86020 5.91619 5.98323 6.01446 6.10559 6.13347 6.21100 6.26672 6.32374 6.38588 6.43000 6.50666 6.59340 6.74148 7.17269 7.26822 7.64104 8.26141 8.46177 8.91638 9.56059 11.02148 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.024501 B = 0.007286 C = 0.006964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.533140 B = 3841.881901 C = 4019.640442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 C -0.151 4.151 4 C -0.103 4.103 5 C -0.123 4.123 6 H 0.094 0.906 7 C 0.052 3.948 8 O -0.375 6.375 9 C 0.037 3.963 10 C 0.090 3.910 11 C -0.151 4.151 12 C -0.136 4.136 13 C 0.164 3.836 14 H 0.042 0.958 15 C -0.531 4.531 16 H 0.076 0.924 17 C 0.085 3.915 18 N -0.894 5.894 19 Si 0.899 3.101 20 H -0.273 1.273 21 H -0.266 1.266 22 H -0.299 1.299 23 O -0.370 6.370 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.109 0.891 36 H 0.055 0.945 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.355 0.598 -10.319 18.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.208 4.208 4 C -0.140 4.140 5 C -0.141 4.141 6 H 0.112 0.888 7 C -0.025 4.025 8 O -0.293 6.293 9 C -0.040 4.040 10 C 0.049 3.951 11 C -0.188 4.188 12 C -0.173 4.173 13 C 0.109 3.891 14 H 0.060 0.940 15 C -0.568 4.568 16 H 0.094 0.906 17 C -0.119 4.119 18 N -0.531 5.531 19 Si 0.728 3.272 20 H -0.199 1.199 21 H -0.191 1.191 22 H -0.227 1.227 23 O -0.290 6.290 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.127 0.873 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.836 0.716 -10.478 18.177 hybrid contribution -0.144 0.715 -0.179 0.751 sum -14.979 1.431 -10.657 18.439 Atomic orbital electron populations 1.21832 0.95438 1.01495 1.01564 1.21162 0.95403 0.96595 0.98586 1.21901 1.01647 0.95824 1.01401 1.21813 0.93876 1.00537 0.97818 1.22583 0.95751 1.01105 0.94698 0.88819 1.23452 0.89051 0.93434 0.96586 1.89164 1.38789 1.76769 1.24594 1.23872 1.01804 0.95967 0.82362 1.22502 0.89600 0.90690 0.92325 1.23339 0.97732 1.01562 0.96193 1.23099 0.97161 1.01352 0.95715 1.20968 0.95096 0.94324 0.78702 0.93988 1.21278 0.93195 1.06249 1.36094 0.90575 1.25021 0.95039 0.98576 0.93292 1.69934 1.00739 1.38275 1.44155 0.86431 0.77594 0.82962 0.80236 1.19877 1.19097 1.22696 1.88407 1.59924 1.60281 1.20408 0.92729 0.92958 0.92838 0.91307 0.93105 0.92670 0.92157 0.91679 0.90921 0.92789 0.89808 0.87336 0.92651 0.90232 0.91128 0.90965 0.91795 0.92554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.19 37.16 0.34 -0.94 16 2 C -0.10 -1.01 2.85 -90.62 -0.26 -1.27 16 3 C -0.15 -1.61 8.96 37.16 0.33 -1.28 16 4 C -0.10 -1.24 2.84 -26.73 -0.08 -1.31 16 5 C -0.12 -1.90 2.79 -89.46 -0.25 -2.15 16 6 H 0.09 1.59 6.28 -51.93 -0.33 1.26 16 7 C 0.05 0.77 6.39 38.07 0.24 1.01 16 8 O -0.37 -7.18 11.66 -35.23 -0.41 -7.59 16 9 C 0.04 0.69 6.88 37.39 0.26 0.95 16 10 C 0.09 1.67 1.15 -89.68 -0.10 1.57 16 11 C -0.15 -2.41 4.85 -24.93 -0.12 -2.53 16 12 C -0.14 -2.59 6.44 -24.63 -0.16 -2.74 16 13 C 0.16 3.92 2.83 -27.11 -0.08 3.84 16 14 H 0.04 1.03 7.17 -51.93 -0.37 0.66 16 15 C -0.53 -15.05 9.33 -34.44 -0.32 -15.37 16 16 H 0.08 2.29 7.77 -52.48 -0.41 1.88 16 17 C 0.09 2.52 5.47 -17.82 -0.10 2.42 16 18 N -0.89 -27.71 13.96 55.43 0.77 -26.93 16 19 Si 0.90 23.55 26.28 -169.99 -4.47 19.09 16 20 H -0.27 -7.32 7.11 56.52 0.40 -6.92 16 21 H -0.27 -6.74 6.53 56.52 0.37 -6.37 16 22 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 23 O -0.37 -8.76 8.25 -35.23 -0.29 -9.05 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.68 7.43 -51.93 -0.39 0.30 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.72 6.47 -51.93 -0.34 0.38 16 31 H 0.06 0.72 7.61 -51.93 -0.39 0.33 16 32 H 0.07 0.91 6.32 -51.93 -0.33 0.58 16 33 H 0.05 0.69 7.79 -51.93 -0.40 0.28 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.11 2.38 8.09 -51.93 -0.42 1.96 16 36 H 0.06 0.89 7.53 -51.93 -0.39 0.50 16 37 H 0.08 1.15 5.60 -51.93 -0.29 0.86 16 38 H 0.07 0.97 7.61 -51.93 -0.40 0.57 16 39 H 0.07 1.42 7.66 -51.93 -0.40 1.02 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 309.49 15.07 4.66 4.66 Total: -1.00 -31.59 309.49 -6.99 -38.58 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -6.98 Total: -0.96 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -0.29 Total: -17.80 kcal Atomic # 7 Polarization: -27.71 SS G_CDS: 0.77 Total: -26.93 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.70 Total: -16.64 kcal Atomic # 14 Polarization: 23.55 SS G_CDS: -4.47 Total: 19.09 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.59 -6.99 -38.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716350760.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.880 kcal (2) G-P(sol) polarization free energy of solvation -31.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds