Wall clock time and date at job start Mon Mar 30 2020 07:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47346 * 2 1 4 4 C 1.53002 * 109.46862 * 119.99908 * 2 1 3 5 5 C 1.53005 * 109.46998 * 175.00022 * 4 2 1 6 6 H 1.08991 * 110.51821 * 54.34182 * 5 4 2 7 7 C 1.54741 * 110.70653 * 291.47208 * 5 4 2 8 8 O 1.44514 * 104.83972 * 217.57932 * 7 5 4 9 9 C 1.44675 * 105.46131 * 39.83222 * 8 7 5 10 10 C 1.53446 * 104.57758 * 320.50350 * 9 8 7 11 11 C 1.53907 * 110.80713 * 142.98791 * 10 9 8 12 12 C 1.55492 * 100.79430 * 86.77913 * 11 10 9 13 13 C 1.54475 * 102.36166 * 33.03910 * 12 11 10 14 14 H 1.09002 * 109.92017 * 98.20084 * 13 12 11 15 15 C 1.50698 * 109.83959 * 219.15307 * 13 12 11 16 16 H 1.08006 * 119.99753 * 359.55049 * 15 13 12 17 17 C 1.37871 * 120.00685 * 179.54978 * 15 13 12 18 18 N 1.31510 * 120.00300 * 179.97438 * 17 15 13 19 19 Si 1.86803 * 119.99799 * 0.02562 * 17 15 13 20 20 H 1.48503 * 109.47127 * 270.00102 * 19 17 15 21 21 H 1.48505 * 109.46869 * 30.00043 * 19 17 15 22 22 H 1.48501 * 109.47474 * 149.99666 * 19 17 15 23 23 O 1.42420 * 111.81655 * 261.71042 * 10 9 8 24 24 H 1.08998 * 109.47504 * 300.00123 * 1 2 3 25 25 H 1.09006 * 109.47268 * 60.00038 * 1 2 3 26 26 H 1.08998 * 109.47413 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47067 * 239.99573 * 2 1 3 28 28 H 1.08997 * 109.46840 * 300.00002 * 3 2 1 29 29 H 1.08998 * 109.46920 * 59.99519 * 3 2 1 30 30 H 1.08999 * 109.47130 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47026 * 55.00306 * 4 2 1 32 32 H 1.08995 * 109.47052 * 294.99885 * 4 2 1 33 33 H 1.08997 * 110.36567 * 336.42496 * 7 5 4 34 34 H 1.09001 * 110.35883 * 98.63398 * 7 5 4 35 35 H 1.08998 * 110.41413 * 201.73160 * 9 8 7 36 36 H 1.08997 * 110.41452 * 79.28034 * 9 8 7 37 37 H 1.08995 * 111.14703 * 204.66553 * 11 10 9 38 38 H 1.09003 * 111.14898 * 328.85354 * 11 10 9 39 39 H 1.08998 * 110.83056 * 274.81932 * 12 11 10 40 40 H 1.08997 * 110.82432 * 151.24817 * 12 11 10 41 41 H 0.96999 * 120.00209 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5648 -0.8311 1.1880 6 1 4.0130 0.1515 1.0412 7 6 3.9988 -1.8005 0.0628 8 8 5.1400 -2.5050 0.6009 9 6 4.8149 -2.7645 1.9865 10 6 4.1100 -1.4877 2.4635 11 6 2.9663 -1.8255 3.4363 12 6 3.7371 -1.8760 4.7858 13 6 4.8353 -0.8094 4.5794 14 1 4.5330 0.1295 5.0434 15 6 6.1306 -1.2851 5.1851 16 1 6.1761 -2.2456 5.6769 17 6 7.2577 -0.4944 5.1113 18 7 8.3879 -0.9094 5.6403 19 14 7.1789 1.1671 4.2613 20 1 7.5030 1.0024 2.8214 21 1 5.8114 1.7296 4.3997 22 1 8.1594 2.0904 4.8870 23 8 4.9981 -0.6235 3.1654 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.6767 1.9562 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 3.1300 1.4424 -0.0005 31 1 1.6053 -1.7198 1.2952 32 1 1.7515 -0.1583 2.1369 33 1 3.1947 -2.4999 -0.1665 34 1 4.2816 -1.2429 -0.8301 35 1 5.7230 -2.9359 2.5645 36 1 4.1453 -3.6208 2.0660 37 1 2.2113 -1.0394 3.4438 38 1 2.5216 -2.7923 3.2001 39 1 4.1778 -2.8604 4.9438 40 1 3.0844 -1.6046 5.6153 41 1 9.1809 -0.3533 5.5881 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716350760.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:18 Heat of formation + Delta-G solvation = -124.304196 kcal Electronic energy + Delta-G solvation = -20568.325870 eV Core-core repulsion = 17639.884008 eV Total energy + Delta-G solvation = -2928.441863 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.72091 -38.75327 -37.35186 -34.79048 -33.33491 -32.54157 -30.54625 -28.14800 -27.97591 -26.80817 -24.95208 -23.36366 -22.19063 -20.99903 -20.04145 -18.91642 -17.65279 -17.10700 -16.97345 -16.46389 -16.34902 -15.71976 -15.11054 -14.88071 -14.75812 -14.44547 -14.17690 -13.98656 -13.67884 -13.26088 -13.11452 -13.00090 -12.89762 -12.57960 -12.40684 -12.27060 -12.04119 -11.80309 -11.67729 -11.57927 -11.49126 -11.28254 -11.21426 -11.04981 -10.86460 -10.82053 -9.91698 -8.37393 -6.48090 1.29950 1.39122 1.46849 2.34162 2.82082 3.01686 3.31247 3.59649 3.81127 3.86273 3.93661 4.05009 4.14626 4.22343 4.31860 4.41465 4.47614 4.51944 4.58850 4.71377 4.75104 4.82090 4.86111 4.89259 4.93486 4.99945 5.04437 5.08397 5.10438 5.17570 5.25908 5.29884 5.40441 5.49048 5.54822 5.55363 5.59113 5.84869 6.14768 6.51622 6.74188 7.28951 8.77237 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.024501 B = 0.007286 C = 0.006964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.533140 B = 3841.881901 C = 4019.640442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 C -0.152 4.152 4 C -0.097 4.097 5 C -0.116 4.116 6 H 0.073 0.927 7 C 0.049 3.951 8 O -0.405 6.405 9 C 0.037 3.963 10 C 0.071 3.929 11 C -0.132 4.132 12 C -0.133 4.133 13 C 0.162 3.838 14 H 0.038 0.962 15 C -0.532 4.532 16 H 0.043 0.957 17 C 0.029 3.971 18 N -0.940 5.940 19 Si 0.958 3.042 20 H -0.286 1.286 21 H -0.251 1.251 22 H -0.291 1.291 23 O -0.398 6.398 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.059 0.941 40 H 0.086 0.914 41 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.837 0.904 -11.956 22.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 C -0.210 4.210 4 C -0.134 4.134 5 C -0.134 4.134 6 H 0.091 0.909 7 C -0.027 4.027 8 O -0.325 6.325 9 C -0.039 4.039 10 C 0.031 3.969 11 C -0.169 4.169 12 C -0.171 4.171 13 C 0.106 3.894 14 H 0.056 0.944 15 C -0.570 4.570 16 H 0.061 0.939 17 C -0.170 4.170 18 N -0.580 5.580 19 Si 0.785 3.215 20 H -0.212 1.212 21 H -0.174 1.174 22 H -0.218 1.218 23 O -0.319 6.319 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.077 0.923 40 H 0.105 0.895 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.343 1.024 -12.117 22.008 hybrid contribution 0.949 0.547 0.281 1.131 sum -17.394 1.571 -11.835 21.097 Atomic orbital electron populations 1.21800 0.93905 1.02309 1.01995 1.21140 0.96562 0.95778 0.97910 1.21916 1.00484 0.96684 1.01878 1.21802 0.90910 1.01951 0.98719 1.22557 0.98123 0.99811 0.92953 0.90880 1.23723 0.88667 0.93792 0.96493 1.89125 1.41265 1.77511 1.24566 1.23800 1.00403 0.97582 0.82143 1.22936 0.89858 0.90223 0.93903 1.23346 0.96773 1.04215 0.92579 1.23026 0.96370 0.98972 0.98726 1.20832 0.94157 0.95478 0.78928 0.94410 1.21649 0.95365 1.04639 1.35328 0.93916 1.25816 0.94902 1.02035 0.94247 1.70051 1.01586 1.39849 1.46523 0.85505 0.78393 0.79453 0.78170 1.21235 1.17441 1.21844 1.88303 1.62003 1.61515 1.20053 0.92762 0.92179 0.91826 0.90638 0.91852 0.93053 0.93962 0.89660 0.91073 0.89565 0.88607 0.91928 0.89349 0.87876 0.87760 0.92261 0.89496 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.19 71.98 0.66 -1.22 16 2 C -0.10 -1.58 2.85 -10.79 -0.03 -1.61 16 3 C -0.15 -2.87 8.96 71.98 0.65 -2.23 16 4 C -0.10 -1.91 2.84 30.60 0.09 -1.82 16 5 C -0.12 -3.28 2.79 -10.04 -0.03 -3.31 16 6 H 0.07 2.39 6.28 -2.39 -0.02 2.38 16 7 C 0.05 1.32 6.39 72.58 0.46 1.79 16 8 O -0.41 -15.14 11.66 -148.98 -1.74 -16.87 16 9 C 0.04 1.39 6.88 72.13 0.50 1.89 16 10 C 0.07 2.51 1.15 -10.18 -0.01 2.50 16 11 C -0.13 -3.72 4.85 31.76 0.15 -3.57 16 12 C -0.13 -4.86 6.44 31.95 0.21 -4.66 16 13 C 0.16 7.70 2.83 30.35 0.09 7.78 16 14 H 0.04 1.83 7.17 -2.39 -0.02 1.81 16 15 C -0.53 -31.22 9.33 25.60 0.24 -30.98 16 16 H 0.04 2.71 7.77 -2.91 -0.02 2.69 16 17 C 0.03 1.80 5.47 84.65 0.46 2.26 16 18 N -0.94 -60.65 13.96 21.44 0.30 -60.35 16 19 Si 0.96 49.86 26.28 68.60 1.80 51.66 16 20 H -0.29 -15.33 7.11 99.48 0.71 -14.62 16 21 H -0.25 -12.25 6.53 99.48 0.65 -11.60 16 22 H -0.29 -14.59 7.11 99.48 0.71 -13.89 16 23 O -0.40 -18.76 8.25 -148.98 -1.23 -19.99 16 24 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 26 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.08 1.17 7.43 -2.39 -0.02 1.16 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.04 0.94 6.47 -2.39 -0.02 0.92 16 31 H 0.08 1.38 7.61 -2.39 -0.02 1.37 16 32 H 0.07 1.46 6.32 -2.39 -0.02 1.45 16 33 H 0.09 1.78 7.79 -2.39 -0.02 1.76 16 34 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.06 2.86 8.09 -2.39 -0.02 2.84 16 36 H 0.09 2.63 7.53 -2.39 -0.02 2.61 16 37 H 0.10 2.48 5.60 -2.39 -0.01 2.46 16 38 H 0.10 2.29 7.61 -2.39 -0.02 2.27 16 39 H 0.06 2.29 7.66 -2.39 -0.02 2.28 16 40 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 41 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16 Total: -1.00 -71.87 309.49 3.50 -68.37 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 0.93 Total: 10.36 kcal Atomic # 6 Polarization: -36.61 SS G_CDS: 3.43 Total: -33.18 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: 0.30 Total: -60.35 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -2.97 Total: -36.87 kcal Atomic # 14 Polarization: 49.86 SS G_CDS: 1.80 Total: 51.66 kcal Total: -71.87 3.50 -68.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716350760.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.932 kcal (2) G-P(sol) polarization free energy of solvation -71.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds