Wall clock time and date at job start Mon Mar 30 2020 06:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47352 * 2 1 4 4 C 1.52990 * 109.47483 * 174.90427 * 3 2 1 5 5 C 1.50703 * 115.55248 * 61.36423 * 4 3 2 6 6 O 1.20826 * 119.99873 * 245.61341 * 5 4 3 7 7 O 1.34230 * 119.99878 * 65.60068 * 5 4 3 8 8 C 1.45204 * 116.99829 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.46811 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.47053 * 299.99934 * 9 8 7 11 11 C 1.52993 * 109.47424 * 60.00166 * 9 8 7 12 12 C 1.50703 * 109.46787 * 180.02562 * 9 8 7 13 13 H 1.08003 * 120.00025 * 0.02562 * 12 9 8 14 14 C 1.37875 * 120.00151 * 179.97438 * 12 9 8 15 15 N 1.31522 * 119.99559 * 359.97438 * 14 12 9 16 16 Si 1.86795 * 120.00362 * 180.02562 * 14 12 9 17 17 H 1.48500 * 109.47092 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47050 * 119.99907 * 16 14 12 19 19 H 1.48495 * 109.47264 * 240.00046 * 16 14 12 20 20 C 1.52999 * 117.50043 * 207.02996 * 4 3 2 21 21 C 1.53004 * 117.50131 * 275.69233 * 4 3 2 22 22 H 1.09005 * 109.46680 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46888 * 299.99723 * 1 2 3 24 24 H 1.08997 * 109.47144 * 60.00156 * 1 2 3 25 25 H 1.09000 * 109.47307 * 239.99999 * 2 1 3 26 26 H 1.08997 * 109.47144 * 119.99844 * 2 1 3 27 27 H 1.09003 * 109.46675 * 54.90282 * 3 2 1 28 28 H 1.08996 * 109.46768 * 294.90932 * 3 2 1 29 29 H 1.09002 * 109.46843 * 60.00925 * 8 7 5 30 30 H 1.08995 * 109.47203 * 300.00746 * 8 7 5 31 31 H 1.09000 * 109.47188 * 60.00660 * 10 9 8 32 32 H 1.08996 * 109.47376 * 180.02562 * 10 9 8 33 33 H 1.09002 * 109.47446 * 300.00400 * 10 9 8 34 34 H 1.09000 * 109.47420 * 60.00086 * 11 9 8 35 35 H 1.09002 * 109.47419 * 179.97438 * 11 9 8 36 36 H 1.09001 * 109.47346 * 300.00177 * 11 9 8 37 37 H 0.97004 * 119.99620 * 179.97438 * 15 14 12 38 38 H 1.08999 * 117.50048 * 215.00134 * 20 4 3 39 39 H 1.09002 * 117.49952 * 0.02562 * 20 4 3 40 40 H 1.09000 * 117.49237 * 359.97438 * 21 4 3 41 41 H 1.08999 * 117.49801 * 144.97535 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5646 1.4445 0.1281 5 6 4.3115 0.7586 -0.9868 6 8 4.9464 -0.2442 -0.7611 7 8 4.2711 1.2618 -2.2305 8 6 5.0136 0.5487 -3.2545 9 6 4.8504 1.2665 -4.5958 10 6 3.3688 1.3072 -4.9754 11 6 5.3863 2.6947 -4.4786 12 6 5.6205 0.5260 -5.6587 13 1 6.1710 -0.3673 -5.4032 14 6 5.6216 0.9885 -6.9576 15 7 4.9500 2.0756 -7.2690 16 14 6.5756 0.0704 -8.2752 17 1 7.2396 -1.1129 -7.6717 18 1 5.6430 -0.3760 -9.3411 19 1 7.6022 0.9697 -8.8604 20 6 4.2184 2.6720 0.7658 21 6 4.1554 1.3508 1.5364 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6040 1.9820 0.8409 28 1 1.7531 1.9293 -0.9320 29 1 4.6320 -0.4689 -3.3378 30 1 6.0692 0.5200 -2.9843 31 1 2.8114 1.8426 -4.2067 32 1 3.2524 1.8181 -5.9311 33 1 2.9869 0.2897 -5.0589 34 1 6.4418 2.6657 -4.2083 35 1 5.2704 3.2059 -5.4344 36 1 4.8289 3.2300 -3.7099 37 1 4.9510 2.4011 -8.1828 38 1 5.1887 2.9834 0.3790 39 1 3.5623 3.4780 1.0944 40 1 3.4578 1.2882 2.3716 41 1 5.0840 0.7928 1.6565 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764839259.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:39 Heat of formation + Delta-G solvation = -88.810493 kcal Electronic energy + Delta-G solvation = -19664.240719 eV Core-core repulsion = 16737.337979 eV Total energy + Delta-G solvation = -2926.902740 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.27215 -37.75246 -36.23694 -34.79965 -33.86063 -31.24868 -27.73414 -26.00535 -25.60627 -25.18405 -23.34507 -22.64465 -21.53398 -19.37417 -18.79860 -16.93360 -16.15060 -15.94403 -15.74445 -14.95113 -14.70348 -14.57341 -13.67952 -13.40168 -13.01934 -12.84654 -12.67511 -12.27245 -11.97269 -11.65684 -11.58308 -11.45839 -11.33385 -11.15736 -10.97047 -10.80202 -10.66905 -10.44324 -10.40229 -10.21013 -10.08496 -9.87265 -9.83930 -9.39580 -9.28208 -8.73805 -8.37399 -6.01511 -4.12974 2.59035 3.13889 3.27003 3.35418 3.40338 3.66982 4.38723 4.46415 4.70593 4.80937 5.06334 5.10077 5.21157 5.24941 5.36106 5.52981 5.65353 5.72833 5.76849 5.83505 5.87181 6.01487 6.08134 6.11296 6.11835 6.21626 6.30517 6.48466 6.76698 6.99518 7.09706 7.15850 7.17715 7.41829 7.63368 7.70783 8.06036 8.16929 8.30918 8.41127 8.87190 9.52539 10.99730 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.029344 B = 0.005101 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.964227 B = 5488.233182 C = 5759.591193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.075 4.075 4 C -0.131 4.131 5 C 0.491 3.509 6 O -0.517 6.517 7 O -0.341 6.341 8 C 0.083 3.917 9 C 0.070 3.930 10 C -0.129 4.129 11 C -0.129 4.129 12 C -0.511 4.511 13 H 0.057 0.943 14 C 0.068 3.932 15 N -0.882 5.882 16 Si 0.895 3.105 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.154 4.154 21 C -0.148 4.148 22 H 0.053 0.947 23 H 0.052 0.948 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.017 0.983 32 H 0.084 0.916 33 H 0.022 0.978 34 H 0.022 0.978 35 H 0.084 0.916 36 H 0.017 0.983 37 H 0.260 0.740 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.118 1.162 14.343 15.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C -0.112 4.112 4 C -0.133 4.133 5 C 0.333 3.667 6 O -0.407 6.407 7 O -0.257 6.257 8 C 0.011 3.989 9 C 0.070 3.930 10 C -0.186 4.186 11 C -0.186 4.186 12 C -0.549 4.549 13 H 0.075 0.925 14 C -0.134 4.134 15 N -0.520 5.520 16 Si 0.723 3.277 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.191 4.191 21 C -0.185 4.185 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.036 0.964 32 H 0.103 0.897 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.102 0.898 36 H 0.036 0.964 37 H 0.070 0.930 38 H 0.119 0.881 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.956 0.975 14.182 15.412 hybrid contribution 0.689 -0.690 -0.832 1.282 sum -5.266 0.285 13.350 14.354 Atomic orbital electron populations 1.21751 0.95548 1.01662 1.01765 1.21517 0.95887 0.96437 1.02528 1.21125 0.89049 0.97689 1.03355 1.20998 0.95929 1.04216 0.92119 1.22340 0.78170 0.82346 0.83816 1.90611 1.40907 1.25006 1.84147 1.86530 1.67149 1.54618 1.17362 1.23680 0.93658 0.95317 0.86275 1.18244 0.94494 0.93152 0.87147 1.21759 0.96081 0.98884 1.01905 1.21760 0.97248 0.98171 1.01467 1.20982 1.30548 1.10725 0.92643 0.92501 1.24857 0.95288 0.94956 0.98267 1.69848 1.41271 1.22012 1.18913 0.86488 0.79757 0.79863 0.81621 1.19788 1.20954 1.20951 1.23117 1.02594 0.91304 1.02050 1.23097 1.03139 0.99908 0.92357 0.92750 0.92868 0.92462 0.91943 0.91793 0.90775 0.90149 0.92642 0.92687 0.96438 0.89745 0.95891 0.95914 0.89754 0.96412 0.92976 0.88103 0.87517 0.87670 0.87894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 37.16 0.37 -1.11 16 2 C -0.13 -1.51 5.68 -26.73 -0.15 -1.66 16 3 C -0.07 -0.88 5.10 -26.73 -0.14 -1.02 16 4 C -0.13 -1.81 2.05 -155.66 -0.32 -2.13 16 5 C 0.49 9.10 6.53 36.01 0.24 9.33 16 6 O -0.52 -10.83 16.45 -18.75 -0.31 -11.13 16 7 O -0.34 -7.06 8.88 -39.26 -0.35 -7.40 16 8 C 0.08 1.90 4.26 37.16 0.16 2.06 16 9 C 0.07 1.74 0.58 -155.66 -0.09 1.65 16 10 C -0.13 -3.13 8.11 37.16 0.30 -2.83 16 11 C -0.13 -3.14 8.11 37.15 0.30 -2.84 16 12 C -0.51 -13.79 8.01 -34.44 -0.28 -14.07 16 13 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 14 C 0.07 1.82 5.15 -17.82 -0.09 1.73 16 15 N -0.88 -24.08 9.35 55.43 0.52 -23.56 16 16 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 20 C -0.15 -1.74 9.94 -26.69 -0.27 -2.00 16 21 C -0.15 -1.66 9.77 -26.69 -0.26 -1.92 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.90 7.77 -51.93 -0.40 0.50 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.69 8.11 -51.93 -0.42 0.27 16 28 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 30 H 0.05 1.27 8.13 -51.93 -0.42 0.85 16 31 H 0.02 0.38 7.68 -51.93 -0.40 -0.02 16 32 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 36 H 0.02 0.39 7.68 -51.93 -0.40 -0.01 16 37 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 38 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.10 1.26 8.00 -51.93 -0.42 0.84 16 LS Contribution 333.87 15.07 5.03 5.03 Total: -1.00 -28.83 333.87 -7.64 -36.47 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -7.28 Total: -0.51 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -0.23 Total: -14.82 kcal Atomic # 7 Polarization: -24.08 SS G_CDS: 0.52 Total: -23.56 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.66 Total: -18.54 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.83 -7.64 -36.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764839259.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.339 kcal (2) G-P(sol) polarization free energy of solvation -28.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds