Wall clock time and date at job start Mon Mar 30 2020 06:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47352 * 2 1 4 4 C 1.52990 * 109.47483 * 174.90427 * 3 2 1 5 5 C 1.50703 * 115.55248 * 61.36423 * 4 3 2 6 6 O 1.20826 * 119.99873 * 245.61341 * 5 4 3 7 7 O 1.34230 * 119.99878 * 65.60068 * 5 4 3 8 8 C 1.45204 * 116.99829 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.46811 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.47053 * 299.99934 * 9 8 7 11 11 C 1.52993 * 109.47424 * 60.00166 * 9 8 7 12 12 C 1.50703 * 109.46787 * 180.02562 * 9 8 7 13 13 H 1.08003 * 120.00025 * 0.02562 * 12 9 8 14 14 C 1.37875 * 120.00151 * 179.97438 * 12 9 8 15 15 N 1.31522 * 119.99559 * 359.97438 * 14 12 9 16 16 Si 1.86795 * 120.00362 * 180.02562 * 14 12 9 17 17 H 1.48500 * 109.47092 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47050 * 119.99907 * 16 14 12 19 19 H 1.48495 * 109.47264 * 240.00046 * 16 14 12 20 20 C 1.52999 * 117.50043 * 207.02996 * 4 3 2 21 21 C 1.53004 * 117.50131 * 275.69233 * 4 3 2 22 22 H 1.09005 * 109.46680 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46888 * 299.99723 * 1 2 3 24 24 H 1.08997 * 109.47144 * 60.00156 * 1 2 3 25 25 H 1.09000 * 109.47307 * 239.99999 * 2 1 3 26 26 H 1.08997 * 109.47144 * 119.99844 * 2 1 3 27 27 H 1.09003 * 109.46675 * 54.90282 * 3 2 1 28 28 H 1.08996 * 109.46768 * 294.90932 * 3 2 1 29 29 H 1.09002 * 109.46843 * 60.00925 * 8 7 5 30 30 H 1.08995 * 109.47203 * 300.00746 * 8 7 5 31 31 H 1.09000 * 109.47188 * 60.00660 * 10 9 8 32 32 H 1.08996 * 109.47376 * 180.02562 * 10 9 8 33 33 H 1.09002 * 109.47446 * 300.00400 * 10 9 8 34 34 H 1.09000 * 109.47420 * 60.00086 * 11 9 8 35 35 H 1.09002 * 109.47419 * 179.97438 * 11 9 8 36 36 H 1.09001 * 109.47346 * 300.00177 * 11 9 8 37 37 H 0.97004 * 119.99620 * 179.97438 * 15 14 12 38 38 H 1.08999 * 117.50048 * 215.00134 * 20 4 3 39 39 H 1.09002 * 117.49952 * 0.02562 * 20 4 3 40 40 H 1.09000 * 117.49237 * 359.97438 * 21 4 3 41 41 H 1.08999 * 117.49801 * 144.97535 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5646 1.4445 0.1281 5 6 4.3115 0.7586 -0.9868 6 8 4.9464 -0.2442 -0.7611 7 8 4.2711 1.2618 -2.2305 8 6 5.0136 0.5487 -3.2545 9 6 4.8504 1.2665 -4.5958 10 6 3.3688 1.3072 -4.9754 11 6 5.3863 2.6947 -4.4786 12 6 5.6205 0.5260 -5.6587 13 1 6.1710 -0.3673 -5.4032 14 6 5.6216 0.9885 -6.9576 15 7 4.9500 2.0756 -7.2690 16 14 6.5756 0.0704 -8.2752 17 1 7.2396 -1.1129 -7.6717 18 1 5.6430 -0.3760 -9.3411 19 1 7.6022 0.9697 -8.8604 20 6 4.2184 2.6720 0.7658 21 6 4.1554 1.3508 1.5364 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6040 1.9820 0.8409 28 1 1.7531 1.9293 -0.9320 29 1 4.6320 -0.4689 -3.3378 30 1 6.0692 0.5200 -2.9843 31 1 2.8114 1.8426 -4.2067 32 1 3.2524 1.8181 -5.9311 33 1 2.9869 0.2897 -5.0589 34 1 6.4418 2.6657 -4.2083 35 1 5.2704 3.2059 -5.4344 36 1 4.8289 3.2300 -3.7099 37 1 4.9510 2.4011 -8.1828 38 1 5.1887 2.9834 0.3790 39 1 3.5623 3.4780 1.0944 40 1 3.4578 1.2882 2.3716 41 1 5.0840 0.7928 1.6565 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764839259.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:38 Heat of formation + Delta-G solvation = -102.021768 kcal Electronic energy + Delta-G solvation = -19664.813603 eV Core-core repulsion = 16737.337979 eV Total energy + Delta-G solvation = -2927.475624 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.72304 -39.06311 -37.84038 -36.61982 -34.74764 -33.28419 -28.72040 -27.70035 -27.60428 -27.19463 -24.76422 -23.52593 -22.46516 -20.91043 -20.57683 -18.35705 -17.78069 -17.56730 -17.40656 -16.69840 -15.82846 -15.74155 -15.10546 -14.85100 -14.61673 -14.30894 -14.05691 -13.59368 -13.33495 -13.25174 -13.03150 -12.85557 -12.70335 -12.63005 -12.47876 -12.36087 -12.20424 -12.15801 -11.76267 -11.73443 -11.53735 -11.38363 -11.31824 -11.08801 -10.91841 -10.75576 -10.42867 -8.06770 -6.25132 1.14266 1.40829 1.43423 1.53400 1.74369 2.43709 2.68857 3.16504 3.50688 3.70304 3.81986 3.91758 4.18399 4.20786 4.22854 4.29558 4.46364 4.56024 4.70640 4.79069 4.83138 4.85476 4.91879 4.95795 5.00763 5.01284 5.17070 5.17645 5.19721 5.24834 5.31148 5.34424 5.43623 5.57406 5.60679 5.64386 6.04275 6.14675 6.34484 6.73922 6.81634 7.42959 8.93247 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.029344 B = 0.005101 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.964227 B = 5488.233182 C = 5759.591193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.127 4.127 3 C -0.069 4.069 4 C -0.156 4.156 5 C 0.485 3.515 6 O -0.548 6.548 7 O -0.347 6.347 8 C 0.096 3.904 9 C 0.061 3.939 10 C -0.116 4.116 11 C -0.117 4.117 12 C -0.535 4.535 13 H 0.047 0.953 14 C 0.029 3.971 15 N -0.899 5.899 16 Si 0.954 3.046 17 H -0.274 1.274 18 H -0.278 1.278 19 H -0.278 1.278 20 C -0.140 4.140 21 C -0.133 4.133 22 H 0.055 0.945 23 H 0.076 0.924 24 H 0.051 0.949 25 H 0.025 0.975 26 H 0.069 0.931 27 H 0.112 0.888 28 H 0.066 0.934 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.031 0.969 32 H 0.065 0.935 33 H 0.018 0.982 34 H 0.019 0.981 35 H 0.064 0.936 36 H 0.032 0.968 37 H 0.263 0.737 38 H 0.089 0.911 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.976 1.941 15.967 17.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.165 4.165 3 C -0.106 4.106 4 C -0.157 4.157 5 C 0.330 3.670 6 O -0.439 6.439 7 O -0.263 6.263 8 C 0.023 3.977 9 C 0.061 3.939 10 C -0.174 4.174 11 C -0.174 4.174 12 C -0.573 4.573 13 H 0.065 0.935 14 C -0.171 4.171 15 N -0.537 5.537 16 Si 0.780 3.220 17 H -0.199 1.199 18 H -0.204 1.204 19 H -0.204 1.204 20 C -0.177 4.177 21 C -0.170 4.170 22 H 0.074 0.926 23 H 0.095 0.905 24 H 0.070 0.930 25 H 0.044 0.956 26 H 0.087 0.913 27 H 0.130 0.870 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.037 0.963 34 H 0.038 0.962 35 H 0.083 0.917 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.108 0.892 39 H 0.158 0.842 40 H 0.158 0.842 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.820 1.761 15.816 17.314 hybrid contribution 0.963 -0.939 -1.283 1.859 sum -5.856 0.822 14.533 15.691 Atomic orbital electron populations 1.21728 0.93818 1.02135 1.02643 1.21522 0.97413 0.96546 1.00970 1.21157 0.87552 0.97571 1.04287 1.21186 0.96673 1.06458 0.91397 1.23443 0.77692 0.82127 0.83749 1.90586 1.42474 1.26505 1.84349 1.86527 1.66956 1.54551 1.18227 1.23249 0.93342 0.94662 0.86479 1.18269 0.94466 0.93377 0.87782 1.21600 0.96083 0.98486 1.01246 1.21600 0.97248 0.97829 1.00760 1.21209 1.31296 1.10915 0.93837 0.93481 1.25511 0.96026 0.95682 0.99915 1.69947 1.41677 1.22685 1.19405 0.85576 0.78613 0.78698 0.79152 1.19875 1.20415 1.20367 1.23297 1.02313 0.91665 1.00423 1.23247 1.02888 0.99215 0.91620 0.92579 0.90543 0.92961 0.95636 0.91253 0.86957 0.91498 0.93735 0.93587 0.95011 0.91642 0.96314 0.96209 0.91680 0.94947 0.92750 0.89249 0.84167 0.84197 0.89415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.91 71.98 0.71 -1.88 16 2 C -0.13 -2.88 5.68 30.59 0.17 -2.71 16 3 C -0.07 -1.45 5.10 30.59 0.16 -1.29 16 4 C -0.16 -4.01 2.05 -52.93 -0.11 -4.12 16 5 C 0.48 18.07 6.53 71.24 0.47 18.53 16 6 O -0.55 -23.46 16.45 21.96 0.36 -23.10 16 7 O -0.35 -14.50 8.88 -51.42 -0.46 -14.95 16 8 C 0.10 4.50 4.26 71.98 0.31 4.81 16 9 C 0.06 3.10 0.58 -52.93 -0.03 3.07 16 10 C -0.12 -5.74 8.11 71.98 0.58 -5.15 16 11 C -0.12 -5.72 8.11 71.98 0.58 -5.14 16 12 C -0.53 -29.36 8.01 25.60 0.21 -29.15 16 13 H 0.05 2.61 7.74 -2.91 -0.02 2.59 16 14 C 0.03 1.55 5.15 84.65 0.44 1.99 16 15 N -0.90 -49.32 9.35 21.45 0.20 -49.12 16 16 Si 0.95 43.09 29.54 68.60 2.03 45.11 16 17 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 19 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 20 C -0.14 -2.74 9.94 30.62 0.30 -2.43 16 21 C -0.13 -2.60 9.77 30.62 0.30 -2.30 16 22 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 23 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.02 0.74 7.77 -2.39 -0.02 0.72 16 26 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 27 H 0.11 1.55 8.11 -2.39 -0.02 1.53 16 28 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.04 2.14 8.13 -2.39 -0.02 2.12 16 30 H 0.05 2.19 8.13 -2.39 -0.02 2.17 16 31 H 0.03 1.42 7.68 -2.39 -0.02 1.40 16 32 H 0.06 3.47 6.07 -2.39 -0.01 3.46 16 33 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.06 3.45 6.07 -2.39 -0.01 3.43 16 36 H 0.03 1.44 7.68 -2.39 -0.02 1.42 16 37 H 0.26 13.69 8.31 -92.71 -0.77 12.92 16 38 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.14 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.14 1.77 8.14 -2.39 -0.02 1.76 16 41 H 0.09 2.01 8.00 -2.39 -0.02 1.99 16 Total: -1.00 -62.84 333.87 7.19 -55.65 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.97 Total: 12.19 kcal Atomic # 6 Polarization: -29.86 SS G_CDS: 4.09 Total: -25.77 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: 0.20 Total: -49.12 kcal Atomic # 8 Polarization: -37.96 SS G_CDS: -0.10 Total: -38.05 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Total: -62.84 7.19 -55.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764839259.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.374 kcal (2) G-P(sol) polarization free energy of solvation -62.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds