Wall clock time and date at job start Mon Mar 30 2020 06:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20762 * 120.00159 * 2 1 4 4 C 1.50702 * 119.99729 * 179.97438 * 2 1 3 5 5 C 1.52995 * 109.47248 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47395 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.47357 * 180.02562 * 6 5 4 8 8 O 1.20828 * 119.99973 * 359.97438 * 7 6 5 9 9 O 1.34232 * 120.00141 * 180.02562 * 7 6 5 10 10 C 1.45199 * 116.99697 * 177.69712 * 9 7 6 11 11 C 1.50703 * 112.84592 * 65.19332 * 10 9 7 12 12 H 1.08001 * 119.99605 * 242.59924 * 11 10 9 13 13 C 1.37882 * 120.00427 * 62.60893 * 11 10 9 14 14 N 1.31516 * 119.99366 * 353.75077 * 13 11 10 15 15 Si 1.86795 * 120.00240 * 173.75482 * 13 11 10 16 16 H 1.48493 * 109.47148 * 59.99485 * 15 13 11 17 17 H 1.48491 * 109.47008 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47064 * 299.99651 * 15 13 11 19 19 C 1.53780 * 113.61912 * 293.99359 * 10 9 7 20 20 C 1.53953 * 87.01850 * 220.04867 * 19 10 9 21 21 C 1.53778 * 113.61170 * 196.38164 * 10 9 7 22 22 H 1.09002 * 109.47456 * 270.00296 * 1 2 3 23 23 H 1.09000 * 109.46635 * 30.00127 * 1 2 3 24 24 H 1.09005 * 109.47500 * 149.99746 * 1 2 3 25 25 H 1.08999 * 109.47378 * 59.99791 * 4 2 1 26 26 H 1.09010 * 109.46825 * 300.00026 * 4 2 1 27 27 H 1.09001 * 109.47033 * 59.99990 * 5 4 2 28 28 H 1.08999 * 109.47308 * 300.00038 * 5 4 2 29 29 H 1.09000 * 109.46751 * 299.99807 * 6 5 4 30 30 H 1.08999 * 109.47255 * 59.99554 * 6 5 4 31 31 H 0.97001 * 119.99179 * 185.02137 * 14 13 11 32 32 H 1.08996 * 113.61197 * 334.57218 * 19 10 9 33 33 H 1.08998 * 113.61274 * 105.47327 * 19 10 9 34 34 H 1.08995 * 113.53971 * 270.80742 * 20 19 10 35 35 H 1.08996 * 113.74190 * 139.94059 * 20 19 10 36 36 H 1.09000 * 113.61788 * 254.52972 * 21 10 9 37 37 H 1.08998 * 113.61550 * 25.35400 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2605 -1.3052 0.0006 5 6 3.7647 -1.0257 0.0011 6 6 4.5296 -2.3507 0.0023 7 6 6.0113 -2.0754 0.0035 8 8 6.4141 -0.9363 0.0029 9 8 6.8835 -3.0957 0.0042 10 6 8.2945 -2.7567 -0.0467 11 6 8.7641 -2.0208 1.1817 12 1 9.1428 -1.0131 1.0956 13 6 8.7105 -2.6341 2.4155 14 7 8.1376 -3.8113 2.5401 15 14 9.4514 -1.7929 3.9097 16 1 8.7772 -0.4879 4.1281 17 1 9.2636 -2.6528 5.1056 18 1 10.9018 -1.5689 3.6832 19 6 8.7207 -2.0896 -1.3651 20 6 10.0037 -2.9367 -1.2856 21 6 9.1978 -3.9373 -0.4405 22 1 -0.3634 0.0001 1.0277 23 1 -0.3632 0.8900 -0.5139 24 1 -0.3634 -0.8900 -0.5139 25 1 1.9971 -1.8772 -0.8891 26 1 1.9970 -1.8763 0.8909 27 1 4.0277 -0.4539 0.8911 28 1 4.0284 -0.4543 -0.8889 29 1 4.2659 -2.9216 0.8926 30 1 4.2667 -2.9229 -0.8873 31 1 8.0348 -4.2100 3.4185 32 1 8.0809 -2.3443 -2.2100 33 1 8.8976 -1.0179 -1.2748 34 1 10.8115 -2.4527 -0.7367 35 1 10.3256 -3.3369 -2.2469 36 1 9.7595 -4.3550 0.3950 37 1 8.6884 -4.6988 -1.0310 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788130832.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:44 Heat of formation + Delta-G solvation = -119.226426 kcal Electronic energy + Delta-G solvation = -19081.152495 eV Core-core repulsion = 16017.097726 eV Total energy + Delta-G solvation = -3064.054769 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.135 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.56907 -39.14023 -37.14367 -34.31185 -33.79004 -32.26047 -30.78602 -28.01012 -26.08147 -24.53446 -23.41974 -22.06841 -19.60998 -19.40712 -18.51605 -16.87602 -15.99483 -15.96485 -15.36805 -15.07800 -14.91725 -14.63268 -14.58341 -13.91692 -13.51856 -12.95176 -12.58916 -12.38594 -12.16681 -11.84315 -11.72658 -11.56542 -11.19030 -11.00964 -10.94177 -10.85532 -10.52038 -10.37652 -10.26718 -9.85080 -9.77755 -9.66833 -9.18461 -8.74789 -8.49976 -8.46622 -6.08139 -4.19456 1.94389 3.30042 3.33471 3.38686 3.60283 3.86673 4.25199 4.38259 4.85820 5.04180 5.07388 5.21913 5.25758 5.29287 5.49018 5.66242 5.70605 5.74102 5.79963 5.88836 5.93999 5.99223 6.28594 6.38305 6.49376 6.56024 6.62573 6.66681 6.95095 7.13330 7.32036 7.50074 7.58917 7.82626 8.02176 8.42602 8.84324 9.31648 9.51024 10.96374 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.022486 B = 0.005580 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.930883 B = 5016.428228 C = 5674.898080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.350 3.650 3 O -0.454 6.454 4 C -0.172 4.172 5 C -0.099 4.099 6 C -0.117 4.117 7 C 0.458 3.542 8 O -0.512 6.512 9 O -0.346 6.346 10 C 0.241 3.759 11 C -0.513 4.513 12 H 0.067 0.933 13 C 0.076 3.924 14 N -0.864 5.864 15 Si 0.892 3.108 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.159 4.159 20 C -0.132 4.132 21 C -0.108 4.108 22 H 0.093 0.907 23 H 0.081 0.919 24 H 0.084 0.916 25 H 0.098 0.902 26 H 0.100 0.900 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.263 0.737 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.825 -0.407 -5.264 12.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.225 3.775 3 O -0.327 6.327 4 C -0.210 4.210 5 C -0.136 4.136 6 C -0.155 4.155 7 C 0.300 3.700 8 O -0.401 6.401 9 O -0.262 6.262 10 C 0.207 3.793 11 C -0.550 4.550 12 H 0.085 0.915 13 C -0.130 4.130 14 N -0.500 5.500 15 Si 0.719 3.281 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.198 1.198 19 C -0.197 4.197 20 C -0.169 4.169 21 C -0.146 4.146 22 H 0.112 0.888 23 H 0.100 0.900 24 H 0.103 0.897 25 H 0.116 0.884 26 H 0.118 0.882 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.310 0.287 -5.145 12.428 hybrid contribution 0.212 0.304 0.965 1.033 sum -11.098 0.591 -4.180 11.874 Atomic orbital electron populations 1.22305 0.94836 1.04524 1.04504 1.24677 0.91754 0.90604 0.70495 1.90451 1.71945 1.35213 1.35078 1.22182 0.96895 0.97258 1.04641 1.21181 0.91232 0.96484 1.04750 1.21333 0.90700 0.99036 1.04471 1.22874 0.89193 0.84411 0.73543 1.90565 1.80649 1.23470 1.45456 1.86469 1.20533 1.37797 1.81452 1.21133 0.73980 0.92341 0.91844 1.20917 1.42831 1.00432 0.90843 0.91537 1.25063 0.94453 0.94454 0.99035 1.70036 1.40752 1.15541 1.23660 0.86647 0.80067 0.79618 0.81751 1.20042 1.21134 1.19843 1.23546 0.97215 0.99922 0.98972 1.22567 0.96860 0.98884 0.98622 1.22899 0.97042 0.96272 0.98406 0.88834 0.89988 0.89749 0.88366 0.88233 0.90561 0.90827 0.88685 0.89222 0.92769 0.92329 0.91859 0.90280 0.93043 0.90812 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.46 10.25 36.01 0.37 -1.09 16 2 C 0.35 3.98 7.27 -29.03 -0.21 3.77 16 3 O -0.45 -7.37 16.72 6.00 0.10 -7.27 16 4 C -0.17 -1.80 5.62 -27.88 -0.16 -1.96 16 5 C -0.10 -1.54 3.79 -26.73 -0.10 -1.64 16 6 C -0.12 -1.96 5.81 -27.88 -0.16 -2.12 16 7 C 0.46 10.70 7.52 36.00 0.27 10.97 16 8 O -0.51 -13.44 14.43 -18.75 -0.27 -13.71 16 9 O -0.35 -8.86 9.76 -39.26 -0.38 -9.25 16 10 C 0.24 6.20 0.47 -90.96 -0.04 6.16 16 11 C -0.51 -14.48 7.08 -34.44 -0.24 -14.73 16 12 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 13 C 0.08 2.11 5.29 -17.82 -0.09 2.01 16 14 N -0.86 -24.50 12.78 55.43 0.71 -23.79 16 15 Si 0.89 21.64 29.55 -169.99 -5.02 16.62 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 19 C -0.16 -3.61 6.56 -25.83 -0.17 -3.78 16 20 C -0.13 -2.71 7.81 -25.83 -0.20 -2.91 16 21 C -0.11 -2.52 7.28 -25.92 -0.19 -2.71 16 22 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.08 0.41 8.12 -51.93 -0.42 -0.01 16 25 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.10 0.86 8.14 -51.92 -0.42 0.43 16 27 H 0.08 1.38 8.06 -51.93 -0.42 0.97 16 28 H 0.07 1.25 8.06 -51.93 -0.42 0.83 16 29 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 30 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.26 7.09 8.32 -40.82 -0.34 6.75 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.06 1.49 8.08 -51.93 -0.42 1.07 16 34 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.07 1.83 7.97 -51.93 -0.41 1.41 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 317.16 15.07 4.78 4.78 Total: -1.00 -33.71 317.16 -6.89 -40.59 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -5.86 Total: 0.05 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -0.93 Total: -8.03 kcal Atomic # 7 Polarization: -24.50 SS G_CDS: 0.71 Total: -23.79 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -0.55 Total: -30.22 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.71 -6.89 -40.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788130832.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.632 kcal (2) G-P(sol) polarization free energy of solvation -33.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds