Wall clock time and date at job start Mon Mar 30 2020 06:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20762 * 120.00159 * 2 1 4 4 C 1.50702 * 119.99729 * 179.97438 * 2 1 3 5 5 C 1.52995 * 109.47248 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47395 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.47357 * 180.02562 * 6 5 4 8 8 O 1.20828 * 119.99973 * 359.97438 * 7 6 5 9 9 O 1.34232 * 120.00141 * 180.02562 * 7 6 5 10 10 C 1.45199 * 116.99697 * 177.69712 * 9 7 6 11 11 C 1.50703 * 112.84592 * 65.19332 * 10 9 7 12 12 H 1.08001 * 119.99605 * 242.59924 * 11 10 9 13 13 C 1.37882 * 120.00427 * 62.60893 * 11 10 9 14 14 N 1.31516 * 119.99366 * 353.75077 * 13 11 10 15 15 Si 1.86795 * 120.00240 * 173.75482 * 13 11 10 16 16 H 1.48493 * 109.47148 * 59.99485 * 15 13 11 17 17 H 1.48491 * 109.47008 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47064 * 299.99651 * 15 13 11 19 19 C 1.53780 * 113.61912 * 293.99359 * 10 9 7 20 20 C 1.53953 * 87.01850 * 220.04867 * 19 10 9 21 21 C 1.53778 * 113.61170 * 196.38164 * 10 9 7 22 22 H 1.09002 * 109.47456 * 270.00296 * 1 2 3 23 23 H 1.09000 * 109.46635 * 30.00127 * 1 2 3 24 24 H 1.09005 * 109.47500 * 149.99746 * 1 2 3 25 25 H 1.08999 * 109.47378 * 59.99791 * 4 2 1 26 26 H 1.09010 * 109.46825 * 300.00026 * 4 2 1 27 27 H 1.09001 * 109.47033 * 59.99990 * 5 4 2 28 28 H 1.08999 * 109.47308 * 300.00038 * 5 4 2 29 29 H 1.09000 * 109.46751 * 299.99807 * 6 5 4 30 30 H 1.08999 * 109.47255 * 59.99554 * 6 5 4 31 31 H 0.97001 * 119.99179 * 185.02137 * 14 13 11 32 32 H 1.08996 * 113.61197 * 334.57218 * 19 10 9 33 33 H 1.08998 * 113.61274 * 105.47327 * 19 10 9 34 34 H 1.08995 * 113.53971 * 270.80742 * 20 19 10 35 35 H 1.08996 * 113.74190 * 139.94059 * 20 19 10 36 36 H 1.09000 * 113.61788 * 254.52972 * 21 10 9 37 37 H 1.08998 * 113.61550 * 25.35400 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2605 -1.3052 0.0006 5 6 3.7647 -1.0257 0.0011 6 6 4.5296 -2.3507 0.0023 7 6 6.0113 -2.0754 0.0035 8 8 6.4141 -0.9363 0.0029 9 8 6.8835 -3.0957 0.0042 10 6 8.2945 -2.7567 -0.0467 11 6 8.7641 -2.0208 1.1817 12 1 9.1428 -1.0131 1.0956 13 6 8.7105 -2.6341 2.4155 14 7 8.1376 -3.8113 2.5401 15 14 9.4514 -1.7929 3.9097 16 1 8.7772 -0.4879 4.1281 17 1 9.2636 -2.6528 5.1056 18 1 10.9018 -1.5689 3.6832 19 6 8.7207 -2.0896 -1.3651 20 6 10.0037 -2.9367 -1.2856 21 6 9.1978 -3.9373 -0.4405 22 1 -0.3634 0.0001 1.0277 23 1 -0.3632 0.8900 -0.5139 24 1 -0.3634 -0.8900 -0.5139 25 1 1.9971 -1.8772 -0.8891 26 1 1.9970 -1.8763 0.8909 27 1 4.0277 -0.4539 0.8911 28 1 4.0284 -0.4543 -0.8889 29 1 4.2659 -2.9216 0.8926 30 1 4.2667 -2.9229 -0.8873 31 1 8.0348 -4.2100 3.4185 32 1 8.0809 -2.3443 -2.2100 33 1 8.8976 -1.0179 -1.2748 34 1 10.8115 -2.4527 -0.7367 35 1 10.3256 -3.3369 -2.2469 36 1 9.7595 -4.3550 0.3950 37 1 8.6884 -4.6988 -1.0310 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788130832.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:44 Heat of formation + Delta-G solvation = -139.708387 kcal Electronic energy + Delta-G solvation = -19082.040659 eV Core-core repulsion = 16017.097726 eV Total energy + Delta-G solvation = -3064.942933 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.135 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.15153 -40.42288 -38.95965 -36.06484 -35.21838 -34.38365 -31.64884 -29.14556 -28.07894 -26.37692 -25.11947 -23.50525 -21.11152 -20.48550 -20.44621 -18.78195 -17.44451 -17.20970 -17.06747 -16.74972 -16.41640 -16.20468 -15.72569 -15.69322 -14.93022 -14.63707 -14.04767 -13.56451 -13.34915 -13.16739 -12.97734 -12.95757 -12.85660 -12.79339 -12.65625 -12.37835 -12.22070 -12.12192 -11.78880 -11.73954 -11.63843 -11.12400 -10.79889 -10.61208 -10.43892 -10.41298 -8.20441 -6.37683 1.08749 1.34006 1.34960 1.43091 1.78786 2.33363 2.40619 3.08312 3.26417 3.86952 3.99784 4.02110 4.05659 4.10735 4.19709 4.34146 4.47811 4.57480 4.60708 4.73385 4.77711 4.81930 4.84821 4.89351 4.94572 5.13975 5.15625 5.27170 5.34895 5.36378 5.43007 5.62794 5.77009 6.05504 6.49502 6.66342 6.66794 7.30186 7.48104 8.83432 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.022486 B = 0.005580 C = 0.004933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.930883 B = 5016.428228 C = 5674.898080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.349 3.651 3 O -0.518 6.518 4 C -0.166 4.166 5 C -0.094 4.094 6 C -0.105 4.105 7 C 0.442 3.558 8 O -0.553 6.553 9 O -0.359 6.359 10 C 0.213 3.787 11 C -0.533 4.533 12 H 0.042 0.958 13 C 0.036 3.964 14 N -0.884 5.884 15 Si 0.946 3.054 16 H -0.286 1.286 17 H -0.272 1.272 18 H -0.264 1.264 19 C -0.154 4.154 20 C -0.112 4.112 21 C -0.105 4.105 22 H 0.110 0.890 23 H 0.078 0.922 24 H 0.118 0.882 25 H 0.138 0.862 26 H 0.128 0.872 27 H 0.036 0.964 28 H 0.050 0.950 29 H 0.111 0.889 30 H 0.130 0.870 31 H 0.266 0.734 32 H 0.074 0.926 33 H 0.042 0.958 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.051 0.949 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.415 -2.028 -5.839 14.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.228 3.772 3 O -0.396 6.396 4 C -0.202 4.202 5 C -0.132 4.132 6 C -0.142 4.142 7 C 0.286 3.714 8 O -0.444 6.444 9 O -0.275 6.275 10 C 0.179 3.821 11 C -0.570 4.570 12 H 0.060 0.940 13 C -0.168 4.168 14 N -0.520 5.520 15 Si 0.771 3.229 16 H -0.212 1.212 17 H -0.197 1.197 18 H -0.188 1.188 19 C -0.192 4.192 20 C -0.149 4.149 21 C -0.143 4.143 22 H 0.128 0.872 23 H 0.097 0.903 24 H 0.136 0.864 25 H 0.155 0.845 26 H 0.146 0.854 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.129 0.871 30 H 0.148 0.852 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.111 0.889 36 H 0.069 0.931 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.914 -1.367 -5.724 14.192 hybrid contribution 0.671 0.820 1.122 1.543 sum -12.243 -0.548 -4.601 13.091 Atomic orbital electron populations 1.22302 0.90998 1.06057 1.05924 1.25408 0.93919 0.89856 0.67972 1.90452 1.73496 1.37225 1.38381 1.22241 0.92482 0.97688 1.07819 1.21082 0.95143 0.95150 1.01800 1.21452 0.85601 1.00142 1.07005 1.24224 0.91556 0.83560 0.72012 1.90542 1.81757 1.24932 1.47200 1.86449 1.20726 1.38644 1.81692 1.21371 0.74497 0.94017 0.92187 1.21018 1.43586 0.99705 0.92710 0.93976 1.25667 0.94730 0.95148 1.01214 1.70098 1.41368 1.16274 1.24294 0.85822 0.79651 0.78235 0.79229 1.21211 1.19657 1.18838 1.23486 0.98714 0.98843 0.98118 1.22485 0.95462 0.96981 0.99974 1.22861 0.96786 0.96322 0.98288 0.87216 0.90301 0.86387 0.84465 0.85386 0.94456 0.93137 0.87099 0.85192 0.92524 0.90751 0.93884 0.90874 0.88894 0.93057 0.90665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.18 10.25 71.24 0.73 -1.45 16 2 C 0.35 7.41 7.27 29.10 0.21 7.63 16 3 O -0.52 -17.30 16.72 -1.46 -0.02 -17.32 16 4 C -0.17 -2.98 5.62 29.85 0.17 -2.81 16 5 C -0.09 -2.90 3.79 30.59 0.12 -2.78 16 6 C -0.10 -3.34 5.81 29.85 0.17 -3.17 16 7 C 0.44 20.88 7.52 71.24 0.54 21.42 16 8 O -0.55 -30.22 14.43 21.96 0.32 -29.90 16 9 O -0.36 -18.43 9.76 -51.44 -0.50 -18.93 16 10 C 0.21 11.11 0.47 -11.01 -0.01 11.11 16 11 C -0.53 -30.94 7.08 25.60 0.18 -30.76 16 12 H 0.04 2.57 7.81 -2.91 -0.02 2.55 16 13 C 0.04 2.03 5.29 84.66 0.45 2.48 16 14 N -0.88 -50.45 12.78 21.45 0.27 -50.18 16 15 Si 0.95 45.05 29.55 68.60 2.03 47.07 16 16 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 17 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 18 H -0.26 -12.06 7.11 99.48 0.71 -11.36 16 19 C -0.15 -6.99 6.56 31.18 0.20 -6.78 16 20 C -0.11 -4.43 7.81 31.18 0.24 -4.19 16 21 C -0.10 -4.80 7.28 31.12 0.23 -4.57 16 22 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.12 0.55 8.12 -2.38 -0.02 0.53 16 25 H 0.14 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.13 1.66 8.14 -2.38 -0.02 1.64 16 27 H 0.04 1.41 8.06 -2.39 -0.02 1.39 16 28 H 0.05 1.76 8.06 -2.39 -0.02 1.74 16 29 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 30 H 0.13 3.13 8.14 -2.39 -0.02 3.11 16 31 H 0.27 14.34 8.32 -92.71 -0.77 13.57 16 32 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 33 H 0.04 2.08 8.08 -2.39 -0.02 2.06 16 34 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 35 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 36 H 0.05 2.55 7.97 -2.39 -0.02 2.53 16 37 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -78.01 317.16 6.36 -71.65 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 1.04 Total: 11.50 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: 3.23 Total: -13.88 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: 0.27 Total: -50.18 kcal Atomic # 8 Polarization: -65.95 SS G_CDS: -0.21 Total: -66.16 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -78.01 6.36 -71.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788130832.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.060 kcal (2) G-P(sol) polarization free energy of solvation -78.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds