Wall clock time and date at job start Mon Mar 30 2020 06:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47314 * 2 1 4 4 C 1.52994 * 109.47405 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47405 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47314 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47524 * 180.02562 * 6 5 4 8 8 O 1.20828 * 119.99534 * 0.02562 * 7 6 5 9 9 O 1.34230 * 120.00276 * 179.97438 * 7 6 5 10 10 C 1.45198 * 116.99995 * 184.35054 * 9 7 6 11 11 C 1.50697 * 112.85075 * 294.78240 * 10 9 7 12 12 H 1.07996 * 120.00460 * 124.37004 * 11 10 9 13 13 C 1.37877 * 120.00034 * 304.64375 * 11 10 9 14 14 N 1.31514 * 120.00456 * 185.67263 * 13 11 10 15 15 Si 1.86803 * 119.99826 * 5.66997 * 13 11 10 16 16 H 1.48500 * 109.47122 * 84.88081 * 15 13 11 17 17 H 1.48505 * 109.47211 * 204.88076 * 15 13 11 18 18 H 1.48505 * 109.46971 * 324.88091 * 15 13 11 19 19 C 1.53778 * 113.61233 * 65.97593 * 10 9 7 20 20 C 1.53955 * 87.01979 * 89.23077 * 19 10 9 21 21 C 1.53777 * 87.11072 * 25.36097 * 20 19 10 22 22 H 1.09009 * 109.46980 * 300.00154 * 1 2 3 23 23 H 1.09007 * 109.47129 * 59.99493 * 1 2 3 24 24 H 1.08995 * 109.47289 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46702 * 240.00158 * 2 1 3 26 26 H 1.08993 * 109.47007 * 120.00311 * 2 1 3 27 27 H 1.09000 * 109.47001 * 59.99886 * 3 2 1 28 28 H 1.08999 * 109.47182 * 300.00537 * 3 2 1 29 29 H 1.09000 * 109.47187 * 59.99935 * 4 3 2 30 30 H 1.08999 * 109.47336 * 300.00378 * 4 3 2 31 31 H 1.08997 * 109.47107 * 60.00341 * 5 4 3 32 32 H 1.08993 * 109.47338 * 300.00043 * 5 4 3 33 33 H 1.09000 * 109.47179 * 59.99995 * 6 5 4 34 34 H 1.09007 * 109.47129 * 300.00507 * 6 5 4 35 35 H 0.97003 * 120.00086 * 179.97438 * 14 13 11 36 36 H 1.09002 * 113.61715 * 203.74894 * 19 10 9 37 37 H 1.09002 * 113.62053 * 334.64937 * 19 10 9 38 38 H 1.09002 * 113.53645 * 270.80796 * 20 19 10 39 39 H 1.08995 * 113.74545 * 139.94809 * 20 19 10 40 40 H 1.09000 * 113.61296 * 220.09453 * 21 20 19 41 41 H 1.08998 * 113.69248 * 89.20167 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0801 2.8850 0.0000 6 6 5.6101 2.8850 0.0000 7 6 6.1125 4.3057 0.0013 8 8 5.3273 5.2241 0.0026 9 8 7.4322 4.5510 0.0020 10 6 7.8446 5.9396 0.1014 11 6 7.4357 6.7585 -1.0958 12 1 6.8447 7.6525 -0.9622 13 6 7.8115 6.3635 -2.3622 14 7 7.5518 7.1342 -3.3957 15 14 8.6894 4.7333 -2.6100 16 1 7.6873 3.6429 -2.7188 17 1 9.4964 4.7900 -3.8553 18 1 9.5826 4.4712 -1.4528 19 6 7.4868 6.5937 1.4463 20 6 8.8516 6.0984 1.9586 21 6 9.3206 6.1173 0.4943 22 1 -0.3633 0.5139 0.8901 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8899 29 1 3.9330 0.9288 -0.8909 30 1 3.9338 0.9285 0.8891 31 1 3.7172 3.3982 0.8905 32 1 3.7164 3.3993 -0.8895 33 1 5.9734 2.3715 -0.8902 34 1 5.9734 2.3706 0.8898 35 1 7.8165 6.8564 -4.2866 36 1 7.4071 7.6796 1.3963 37 1 6.6369 6.1285 1.9458 38 1 8.8169 5.0994 2.3933 39 1 9.3698 6.8179 2.5925 40 1 9.9491 5.2680 0.2262 41 1 9.7437 7.0721 0.1821 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810858725.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:22 Heat of formation + Delta-G solvation = -93.357208 kcal Electronic energy + Delta-G solvation = -19376.116155 eV Core-core repulsion = 16449.016254 eV Total energy + Delta-G solvation = -2927.099901 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.75930 -37.50989 -36.29826 -34.39207 -33.26641 -32.34207 -29.35541 -26.95160 -25.05809 -24.89946 -22.49125 -21.56995 -21.02377 -19.97986 -18.25388 -17.24429 -16.16000 -15.85788 -15.50260 -15.12368 -14.68836 -14.32896 -13.97459 -13.76728 -13.26535 -12.93368 -12.64751 -12.49609 -12.32299 -11.88771 -11.55175 -11.47901 -11.41002 -11.29053 -10.99581 -10.90986 -10.74929 -10.63600 -10.44220 -10.31560 -10.26489 -9.97807 -9.89776 -9.39951 -8.92688 -8.55583 -8.54205 -6.13679 -4.18231 3.19993 3.34133 3.40367 3.48420 3.75882 4.44434 4.68274 4.81216 4.94402 5.13046 5.15465 5.21185 5.31011 5.43600 5.48968 5.50575 5.62997 5.64372 5.70987 5.73066 5.77130 5.89392 5.93151 5.97540 6.03804 6.09556 6.22659 6.25955 6.28185 6.39195 6.51327 6.62609 6.65803 6.79117 7.00142 7.26503 7.48045 7.80974 8.43590 8.87370 8.98199 9.48362 10.97227 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.024630 B = 0.005179 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.541367 B = 5404.664608 C = 5907.935102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.121 4.121 4 C -0.119 4.119 5 C -0.107 4.107 6 C -0.120 4.120 7 C 0.454 3.546 8 O -0.488 6.488 9 O -0.363 6.363 10 C 0.193 3.807 11 C -0.510 4.510 12 H 0.083 0.917 13 C 0.080 3.920 14 N -0.887 5.887 15 Si 0.885 3.115 16 H -0.282 1.282 17 H -0.300 1.300 18 H -0.249 1.249 19 C -0.140 4.140 20 C -0.147 4.147 21 C -0.123 4.123 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.265 0.735 36 H 0.085 0.915 37 H 0.055 0.945 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.657 -12.834 8.224 16.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.159 4.159 4 C -0.157 4.157 5 C -0.145 4.145 6 C -0.158 4.158 7 C 0.296 3.704 8 O -0.374 6.374 9 O -0.282 6.282 10 C 0.158 3.842 11 C -0.547 4.547 12 H 0.101 0.899 13 C -0.125 4.125 14 N -0.524 5.524 15 Si 0.714 3.286 16 H -0.208 1.208 17 H -0.228 1.228 18 H -0.174 1.174 19 C -0.177 4.177 20 C -0.185 4.185 21 C -0.160 4.160 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.853 -12.478 8.032 15.952 hybrid contribution 0.356 -0.755 -0.415 0.932 sum -5.497 -13.233 7.617 16.228 Atomic orbital electron populations 1.21786 0.96101 1.01318 1.01862 1.21541 0.95683 0.97191 1.01844 1.21618 0.95432 0.96435 1.02365 1.21610 0.95390 0.96685 1.01988 1.21399 0.92803 0.96435 1.03857 1.21441 0.97031 0.92710 1.04618 1.23099 0.81826 0.91626 0.73886 1.90617 1.56755 1.46585 1.43474 1.86311 1.24895 1.34733 1.82252 1.21193 0.92263 0.75881 0.94825 1.21051 1.34769 1.09915 0.88963 0.89901 1.25016 0.94671 0.96929 0.95859 1.69933 1.46269 1.36918 0.99264 0.86783 0.80392 0.84120 0.77341 1.20835 1.22796 1.17369 1.23308 0.95671 1.01212 0.97533 1.22962 0.98229 1.00301 0.96988 1.23272 0.96501 1.02047 0.94203 0.92793 0.92741 0.93019 0.92133 0.92187 0.91929 0.91832 0.91942 0.92021 0.91167 0.90907 0.88862 0.88831 0.92518 0.89616 0.92635 0.91182 0.92377 0.91904 0.88719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.91 37.16 0.37 -0.87 16 2 C -0.13 -1.10 5.93 -26.73 -0.16 -1.26 16 3 C -0.12 -1.24 5.21 -26.74 -0.14 -1.38 16 4 C -0.12 -1.33 5.21 -26.74 -0.14 -1.47 16 5 C -0.11 -1.55 4.51 -26.73 -0.12 -1.67 16 6 C -0.12 -1.94 5.81 -27.88 -0.16 -2.10 16 7 C 0.45 10.02 7.31 36.00 0.26 10.28 16 8 O -0.49 -12.22 14.11 -18.75 -0.26 -12.48 16 9 O -0.36 -8.52 7.27 -39.26 -0.29 -8.80 16 10 C 0.19 4.67 0.11 -90.96 -0.01 4.66 16 11 C -0.51 -14.72 7.92 -34.44 -0.27 -15.00 16 12 H 0.08 2.64 8.06 -52.49 -0.42 2.22 16 13 C 0.08 2.34 5.47 -17.82 -0.10 2.24 16 14 N -0.89 -27.48 13.96 55.43 0.77 -26.71 16 15 Si 0.88 22.50 25.54 -169.99 -4.34 18.16 16 16 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 18 H -0.25 -5.95 5.15 56.52 0.29 -5.66 16 19 C -0.14 -2.97 6.91 -25.83 -0.18 -3.15 16 20 C -0.15 -2.68 8.03 -25.83 -0.21 -2.88 16 21 C -0.12 -2.59 6.50 -25.92 -0.17 -2.76 16 22 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 32 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 33 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 36 H 0.09 1.82 8.09 -51.93 -0.42 1.40 16 37 H 0.05 1.17 7.35 -51.93 -0.38 0.79 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 1.30 6.60 -51.93 -0.34 0.96 16 41 H 0.09 1.98 8.09 -51.93 -0.42 1.56 16 LS Contribution 327.63 15.07 4.94 4.94 Total: -1.00 -32.17 327.63 -7.77 -39.94 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -7.57 Total: 0.31 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: -1.02 Total: -15.35 kcal Atomic # 7 Polarization: -27.48 SS G_CDS: 0.77 Total: -26.71 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.55 Total: -21.28 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.34 Total: 18.16 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.17 -7.77 -39.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810858725.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.415 kcal (2) G-P(sol) polarization free energy of solvation -32.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds