Wall clock time and date at job start Mon Mar 30 2020 06:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00168 * 2 1 4 4 H 1.48495 * 109.47159 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47290 * 300.00141 * 3 2 1 6 6 H 1.48495 * 109.47273 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99508 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99419 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00289 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46972 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47298 * 179.97438 * 10 9 7 12 12 O 1.20833 * 119.99655 * 359.97438 * 11 10 9 13 13 O 1.34222 * 120.00432 * 180.27351 * 11 10 9 14 14 C 1.45201 * 117.00137 * 179.71953 * 13 11 10 15 15 C 1.53011 * 109.47253 * 269.99838 * 14 13 11 16 16 C 1.52991 * 109.45982 * 164.04856 * 15 14 13 17 17 C 1.52986 * 109.50924 * 315.98672 * 16 15 14 18 18 C 1.53013 * 109.46708 * 112.93614 * 17 16 15 19 19 C 1.53000 * 109.43219 * 284.04287 * 18 17 16 20 20 C 1.52991 * 109.48266 * 75.96399 * 19 18 17 21 21 C 1.53001 * 109.50378 * 247.06081 * 20 19 18 22 22 H 0.96999 * 119.99800 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.47178 * 59.99827 * 9 7 2 24 24 H 1.09006 * 109.46629 * 299.99631 * 9 7 2 25 25 H 1.09000 * 109.47764 * 59.99413 * 10 9 7 26 26 H 1.09006 * 109.46938 * 299.99191 * 10 9 7 27 27 H 1.08997 * 109.47182 * 30.00237 * 14 13 11 28 28 H 1.09003 * 109.47672 * 284.04143 * 15 14 13 29 29 H 1.09001 * 109.47147 * 44.05341 * 15 14 13 30 30 H 1.08999 * 109.46403 * 195.97742 * 16 15 14 31 31 H 1.08999 * 109.46855 * 76.00403 * 16 15 14 32 32 H 1.09002 * 109.47228 * 352.94167 * 17 16 15 33 33 H 1.08996 * 109.47220 * 232.93961 * 17 16 15 34 34 H 1.09003 * 109.47302 * 164.05253 * 18 17 16 35 35 H 1.09001 * 109.48354 * 44.03911 * 18 17 16 36 36 H 1.08999 * 109.46797 * 315.95979 * 19 18 17 37 37 H 1.08993 * 109.46587 * 195.96394 * 19 18 17 38 38 H 1.08999 * 109.46463 * 127.05610 * 20 19 18 39 39 H 1.08999 * 109.46217 * 7.06823 * 20 19 18 40 40 H 1.08994 * 109.47346 * 284.01757 * 21 20 19 41 41 H 1.08999 * 109.47265 * 164.01003 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 6 1.4916 -4.9672 -0.0020 12 8 0.2833 -4.9671 -0.0020 13 8 2.1627 -6.1296 0.0037 14 6 1.3718 -7.3473 0.0091 15 6 1.0935 -7.7684 1.4536 16 6 -0.0437 -8.7915 1.4762 17 6 -1.1624 -8.3327 0.5389 18 6 -1.2618 -9.2955 -0.6461 19 6 -0.1142 -9.0233 -1.6207 20 6 1.1844 -9.6005 -1.0539 21 6 2.1421 -8.4589 -0.7068 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5563 -0.8919 24 1 0.6239 -2.5575 0.8881 25 1 2.8712 -3.6048 0.8890 26 1 2.8724 -3.6040 -0.8911 27 1 0.4277 -7.1697 -0.5059 28 1 1.9915 -8.2139 1.8817 29 1 0.8074 -6.8940 2.0382 30 1 -0.4330 -8.8795 2.4905 31 1 0.3323 -9.7599 1.1463 32 1 -0.9423 -7.3293 0.1743 33 1 -2.1086 -8.3233 1.0798 34 1 -2.2141 -9.1477 -1.1555 35 1 -1.1975 -10.3225 -0.2866 36 1 -0.0034 -7.9480 -1.7602 37 1 -0.3326 -9.4934 -2.5795 38 1 1.6477 -10.2501 -1.7965 39 1 0.9640 -10.1759 -0.1548 40 1 2.5835 -8.0640 -1.6217 41 1 2.9313 -8.8324 -0.0543 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813061058.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:22 Heat of formation + Delta-G solvation = -112.809679 kcal Electronic energy + Delta-G solvation = -19535.820270 eV Core-core repulsion = 16607.876847 eV Total energy + Delta-G solvation = -2927.943423 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.48024 -38.64399 -35.87272 -33.55812 -32.98176 -32.36182 -31.04084 -26.83315 -26.05795 -25.54740 -22.36791 -21.95369 -20.91178 -19.87180 -19.30135 -17.46597 -16.60118 -15.96744 -15.60305 -14.78247 -14.74724 -14.42115 -14.28329 -14.23166 -13.43931 -13.32135 -13.11177 -12.54469 -12.28205 -11.90047 -11.68970 -11.51768 -11.41268 -11.22383 -11.17759 -10.96891 -10.89454 -10.62913 -10.58607 -10.40220 -10.04362 -9.91031 -9.85038 -9.69161 -9.48162 -9.14317 -8.36937 -6.00609 -4.05218 2.89392 3.18797 3.31378 3.38892 3.42791 4.43586 4.45071 4.68109 4.74027 4.89067 4.95081 5.04658 5.10025 5.13707 5.23715 5.34967 5.35126 5.54257 5.63580 5.75353 5.80042 5.85182 5.87091 5.90862 6.00777 6.01668 6.11743 6.15363 6.16271 6.23056 6.26272 6.37538 6.46845 6.73847 7.04478 7.68368 7.75619 7.99555 8.29577 8.48045 9.02261 9.58844 11.10501 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.040109 B = 0.004099 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.934864 B = 6828.822503 C = 7036.372652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.033 3.967 10 C -0.104 4.104 11 C 0.455 3.545 12 O -0.507 6.507 13 O -0.364 6.364 14 C 0.063 3.937 15 C -0.134 4.134 16 C -0.121 4.121 17 C -0.140 4.140 18 C -0.117 4.117 19 C -0.135 4.135 20 C -0.123 4.123 21 C -0.115 4.115 22 H 0.261 0.739 23 H 0.025 0.975 24 H 0.025 0.975 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.109 0.891 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.884 -20.465 -0.309 20.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.004 4.004 10 C -0.142 4.142 11 C 0.298 3.702 12 O -0.393 6.393 13 O -0.282 6.282 14 C 0.008 3.992 15 C -0.171 4.171 16 C -0.158 4.158 17 C -0.177 4.177 18 C -0.155 4.155 19 C -0.173 4.173 20 C -0.161 4.161 21 C -0.153 4.153 22 H 0.071 0.929 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.109 0.891 26 H 0.109 0.891 27 H 0.126 0.874 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.353 -20.381 -0.307 20.428 hybrid contribution 0.322 0.923 0.071 0.980 sum 1.676 -19.459 -0.236 19.532 Atomic orbital electron populations 1.70006 1.06096 1.26609 1.50115 1.25019 0.94843 0.99317 0.95143 0.86496 0.80049 0.83598 0.77613 1.19645 1.20970 1.20968 1.21208 0.93107 0.90681 1.51567 0.92287 1.19009 0.93226 0.89316 0.98839 1.21748 1.00650 0.87954 1.03858 1.24733 0.87966 0.85992 0.71464 1.90602 1.15880 1.87625 1.45235 1.86597 1.42277 1.14982 1.84391 1.23342 0.96467 0.82232 0.97114 1.21997 0.99018 0.99921 0.96197 1.21784 0.95401 0.98851 0.99787 1.21931 0.98574 1.00748 0.96448 1.21700 0.98278 0.99167 0.96345 1.21889 0.94723 1.02037 0.98606 1.21829 0.95450 0.97395 1.01377 1.21672 0.98215 0.94490 1.00887 0.92930 0.95617 0.95629 0.89107 0.89111 0.87415 0.91316 0.91354 0.91944 0.90866 0.89807 0.92068 0.92109 0.91933 0.90843 0.92029 0.91657 0.90611 0.91006 0.91092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.18 13.29 55.43 0.74 -26.45 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.53 -14.89 9.11 -34.44 -0.31 -15.20 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.03 0.89 4.26 -27.88 -0.12 0.77 16 10 C -0.10 -2.19 5.75 -27.89 -0.16 -2.35 16 11 C 0.45 9.17 7.91 36.00 0.28 9.46 16 12 O -0.51 -11.53 15.01 -18.76 -0.28 -11.81 16 13 O -0.36 -6.25 9.88 -39.24 -0.39 -6.64 16 14 C 0.06 0.88 1.86 -26.72 -0.05 0.83 16 15 C -0.13 -1.70 5.35 -26.73 -0.14 -1.85 16 16 C -0.12 -1.28 5.48 -26.74 -0.15 -1.42 16 17 C -0.14 -1.61 5.47 -26.73 -0.15 -1.76 16 18 C -0.12 -1.14 5.59 -26.72 -0.15 -1.29 16 19 C -0.14 -1.36 5.47 -26.74 -0.15 -1.50 16 20 C -0.12 -1.12 5.48 -26.74 -0.15 -1.26 16 21 C -0.12 -1.27 5.38 -26.72 -0.14 -1.41 16 22 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 23 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 24 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 25 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 26 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 27 H 0.11 1.64 1.85 -51.93 -0.10 1.55 16 28 H 0.07 0.78 7.82 -51.93 -0.41 0.37 16 29 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.65 4.69 -51.93 -0.24 0.41 16 32 H 0.08 1.22 5.28 -51.93 -0.27 0.95 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.52 7.47 -51.93 -0.39 0.13 16 36 H 0.07 0.90 5.47 -51.93 -0.28 0.61 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.63 4.69 -51.93 -0.24 0.38 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.71 7.82 -51.93 -0.41 0.31 16 LS Contribution 312.21 15.07 4.70 4.70 Total: -1.00 -31.37 312.21 -8.25 -39.63 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -6.53 Total: -0.58 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -1.48 Total: -15.40 kcal Atomic # 7 Polarization: -27.18 SS G_CDS: 0.74 Total: -26.45 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.67 Total: -18.45 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.37 -8.25 -39.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813061058.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.184 kcal (2) G-P(sol) polarization free energy of solvation -31.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds