Wall clock time and date at job start Mon Mar 30 2020 06:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00168 * 2 1 4 4 H 1.48495 * 109.47159 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47290 * 300.00141 * 3 2 1 6 6 H 1.48495 * 109.47273 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99508 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99419 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00289 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46972 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47298 * 179.97438 * 10 9 7 12 12 O 1.20833 * 119.99655 * 359.97438 * 11 10 9 13 13 O 1.34222 * 120.00432 * 180.27351 * 11 10 9 14 14 C 1.45201 * 117.00137 * 179.71953 * 13 11 10 15 15 C 1.53011 * 109.47253 * 269.99838 * 14 13 11 16 16 C 1.52991 * 109.45982 * 164.04856 * 15 14 13 17 17 C 1.52986 * 109.50924 * 315.98672 * 16 15 14 18 18 C 1.53013 * 109.46708 * 112.93614 * 17 16 15 19 19 C 1.53000 * 109.43219 * 284.04287 * 18 17 16 20 20 C 1.52991 * 109.48266 * 75.96399 * 19 18 17 21 21 C 1.53001 * 109.50378 * 247.06081 * 20 19 18 22 22 H 0.96999 * 119.99800 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.47178 * 59.99827 * 9 7 2 24 24 H 1.09006 * 109.46629 * 299.99631 * 9 7 2 25 25 H 1.09000 * 109.47764 * 59.99413 * 10 9 7 26 26 H 1.09006 * 109.46938 * 299.99191 * 10 9 7 27 27 H 1.08997 * 109.47182 * 30.00237 * 14 13 11 28 28 H 1.09003 * 109.47672 * 284.04143 * 15 14 13 29 29 H 1.09001 * 109.47147 * 44.05341 * 15 14 13 30 30 H 1.08999 * 109.46403 * 195.97742 * 16 15 14 31 31 H 1.08999 * 109.46855 * 76.00403 * 16 15 14 32 32 H 1.09002 * 109.47228 * 352.94167 * 17 16 15 33 33 H 1.08996 * 109.47220 * 232.93961 * 17 16 15 34 34 H 1.09003 * 109.47302 * 164.05253 * 18 17 16 35 35 H 1.09001 * 109.48354 * 44.03911 * 18 17 16 36 36 H 1.08999 * 109.46797 * 315.95979 * 19 18 17 37 37 H 1.08993 * 109.46587 * 195.96394 * 19 18 17 38 38 H 1.08999 * 109.46463 * 127.05610 * 20 19 18 39 39 H 1.08999 * 109.46217 * 7.06823 * 20 19 18 40 40 H 1.08994 * 109.47346 * 284.01757 * 21 20 19 41 41 H 1.08999 * 109.47265 * 164.01003 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 6 1.4916 -4.9672 -0.0020 12 8 0.2833 -4.9671 -0.0020 13 8 2.1627 -6.1296 0.0037 14 6 1.3718 -7.3473 0.0091 15 6 1.0935 -7.7684 1.4536 16 6 -0.0437 -8.7915 1.4762 17 6 -1.1624 -8.3327 0.5389 18 6 -1.2618 -9.2955 -0.6461 19 6 -0.1142 -9.0233 -1.6207 20 6 1.1844 -9.6005 -1.0539 21 6 2.1421 -8.4589 -0.7068 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5563 -0.8919 24 1 0.6239 -2.5575 0.8881 25 1 2.8712 -3.6048 0.8890 26 1 2.8724 -3.6040 -0.8911 27 1 0.4277 -7.1697 -0.5059 28 1 1.9915 -8.2139 1.8817 29 1 0.8074 -6.8940 2.0382 30 1 -0.4330 -8.8795 2.4905 31 1 0.3323 -9.7599 1.1463 32 1 -0.9423 -7.3293 0.1743 33 1 -2.1086 -8.3233 1.0798 34 1 -2.2141 -9.1477 -1.1555 35 1 -1.1975 -10.3225 -0.2866 36 1 -0.0034 -7.9480 -1.7602 37 1 -0.3326 -9.4934 -2.5795 38 1 1.6477 -10.2501 -1.7965 39 1 0.9640 -10.1759 -0.1548 40 1 2.5835 -8.0640 -1.6217 41 1 2.9313 -8.8324 -0.0543 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813061058.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:22 Heat of formation + Delta-G solvation = -129.624838 kcal Electronic energy + Delta-G solvation = -19536.549430 eV Core-core repulsion = 16607.876847 eV Total energy + Delta-G solvation = -2928.672583 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.83126 -39.82841 -37.32345 -35.65687 -33.83291 -33.49097 -32.93931 -28.39895 -27.04608 -26.94917 -24.20030 -22.93165 -21.87869 -21.41350 -20.37317 -19.12710 -18.30073 -17.41605 -17.21029 -16.50676 -16.02848 -15.76576 -15.23227 -15.07787 -14.80876 -14.52366 -14.25879 -14.24597 -13.89610 -13.28975 -12.95915 -12.84142 -12.75673 -12.54313 -12.47171 -12.31894 -12.07407 -12.03013 -11.81456 -11.73633 -11.63989 -11.41940 -11.33781 -11.17494 -10.86258 -10.60582 -10.58648 -8.21389 -6.35435 1.26487 1.42453 1.43632 1.57198 1.78389 2.42435 3.12463 3.53457 3.72302 3.76964 4.00550 4.08211 4.08842 4.16504 4.24671 4.27260 4.27787 4.41812 4.42597 4.70656 4.74269 4.79605 4.88202 4.94587 4.95432 4.99833 5.05762 5.12702 5.15428 5.25510 5.29391 5.38885 5.44151 5.52555 5.53065 5.56604 5.60081 5.79057 6.12009 6.80308 6.88905 7.35033 8.91643 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.040109 B = 0.004099 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.934864 B = 6828.822503 C = 7036.372652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.975 3.025 4 H -0.253 1.253 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.544 4.544 8 H 0.077 0.923 9 C 0.040 3.960 10 C -0.096 4.096 11 C 0.461 3.539 12 O -0.542 6.542 13 O -0.358 6.358 14 C 0.050 3.950 15 C -0.132 4.132 16 C -0.115 4.115 17 C -0.142 4.142 18 C -0.113 4.113 19 C -0.137 4.137 20 C -0.116 4.116 21 C -0.111 4.111 22 H 0.264 0.736 23 H -0.011 1.011 24 H -0.012 1.012 25 H 0.113 0.887 26 H 0.113 0.887 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.036 0.964 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.043 0.957 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.066 0.934 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.952 -22.120 -0.299 22.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.799 3.201 4 H -0.177 1.177 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.582 4.582 8 H 0.095 0.905 9 C 0.003 3.997 10 C -0.133 4.133 11 C 0.306 3.694 12 O -0.432 6.432 13 O -0.275 6.275 14 C -0.004 4.004 15 C -0.170 4.170 16 C -0.152 4.152 17 C -0.180 4.180 18 C -0.151 4.151 19 C -0.175 4.175 20 C -0.153 4.153 21 C -0.148 4.148 22 H 0.073 0.927 23 H 0.007 0.993 24 H 0.007 0.993 25 H 0.131 0.869 26 H 0.131 0.869 27 H 0.113 0.887 28 H 0.107 0.893 29 H 0.055 0.945 30 H 0.089 0.911 31 H 0.118 0.882 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.062 0.938 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.085 0.915 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.453 -22.067 -0.297 22.337 hybrid contribution -0.370 1.373 0.063 1.423 sum 3.083 -20.694 -0.235 20.924 Atomic orbital electron populations 1.70170 1.08274 1.27896 1.51274 1.26107 0.95726 1.03884 0.94421 0.85249 0.79276 0.77960 0.77629 1.17688 1.20520 1.20531 1.21675 0.94089 0.91300 1.51143 0.90504 1.18777 0.93619 0.91994 0.95326 1.21507 0.99369 0.86487 1.05961 1.24469 0.87256 0.86863 0.70791 1.90600 1.17375 1.88239 1.46969 1.86546 1.42263 1.15115 1.83624 1.23798 0.96438 0.81596 0.98540 1.22015 1.00736 0.99472 0.94766 1.21792 0.94126 0.99104 1.00131 1.21923 0.99089 0.99388 0.97583 1.21698 0.98185 0.99779 0.95416 1.21891 0.95668 1.00328 0.99570 1.21835 0.94266 0.96676 1.02561 1.21720 0.98720 0.93817 1.00546 0.92730 0.99257 0.99328 0.86939 0.86861 0.88707 0.89350 0.94500 0.91072 0.88219 0.93569 0.92053 0.92290 0.89439 0.93848 0.90665 0.89471 0.89170 0.91480 0.89414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.97 13.29 21.45 0.28 -58.69 16 2 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 3 Si 0.98 44.22 29.54 68.60 2.03 46.24 16 4 H -0.25 -10.65 7.11 99.48 0.71 -9.94 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.54 -31.01 9.11 25.60 0.23 -30.78 16 8 H 0.08 4.01 7.74 -2.91 -0.02 3.99 16 9 C 0.04 2.24 4.26 29.85 0.13 2.36 16 10 C -0.10 -4.06 5.75 29.85 0.17 -3.89 16 11 C 0.46 19.20 7.91 71.23 0.56 19.77 16 12 O -0.54 -26.29 15.01 21.94 0.33 -25.96 16 13 O -0.36 -12.30 9.88 -51.34 -0.51 -12.81 16 14 C 0.05 1.39 1.86 30.60 0.06 1.45 16 15 C -0.13 -3.29 5.35 30.60 0.16 -3.12 16 16 C -0.11 -2.23 5.48 30.59 0.17 -2.07 16 17 C -0.14 -3.29 5.47 30.59 0.17 -3.12 16 18 C -0.11 -2.03 5.59 30.60 0.17 -1.86 16 19 C -0.14 -2.56 5.47 30.59 0.17 -2.39 16 20 C -0.12 -1.75 5.48 30.59 0.17 -1.58 16 21 C -0.11 -2.20 5.38 30.60 0.16 -2.04 16 22 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 23 H -0.01 -0.68 8.10 -2.39 -0.02 -0.70 16 24 H -0.01 -0.73 8.10 -2.38 -0.02 -0.75 16 25 H 0.11 4.27 8.14 -2.39 -0.02 4.25 16 26 H 0.11 4.28 8.14 -2.38 -0.02 4.26 16 27 H 0.10 3.02 1.85 -2.39 0.00 3.01 16 28 H 0.09 1.82 7.82 -2.39 -0.02 1.80 16 29 H 0.04 1.13 8.12 -2.39 -0.02 1.11 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.10 1.42 4.69 -2.39 -0.01 1.41 16 32 H 0.05 1.44 5.28 -2.39 -0.01 1.43 16 33 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.09 1.15 7.47 -2.39 -0.02 1.14 16 36 H 0.04 1.09 5.47 -2.39 -0.01 1.07 16 37 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.09 1.10 4.69 -2.39 -0.01 1.09 16 40 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.09 1.47 7.82 -2.39 -0.02 1.45 16 Total: -1.00 -71.03 312.21 5.92 -65.11 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 1.01 Total: 13.12 kcal Atomic # 6 Polarization: -29.80 SS G_CDS: 2.78 Total: -27.01 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: 0.28 Total: -58.69 kcal Atomic # 8 Polarization: -38.59 SS G_CDS: -0.18 Total: -38.77 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -71.03 5.92 -65.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813061058.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.519 kcal (2) G-P(sol) polarization free energy of solvation -71.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds