Wall clock time and date at job start Mon Mar 30 2020 07:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46704 * 2 1 4 4 C 1.53007 * 109.46900 * 180.02562 * 3 2 1 5 5 H 1.08997 * 115.55057 * 29.32806 * 4 3 2 6 6 C 1.52997 * 117.51656 * 243.63201 * 4 3 2 7 7 C 1.52994 * 117.50094 * 175.00219 * 4 3 2 8 8 H 1.09005 * 117.49885 * 359.97438 * 7 4 3 9 9 C 1.50696 * 117.50206 * 215.00509 * 7 4 3 10 10 O 1.20833 * 119.99655 * 359.97438 * 9 7 4 11 11 O 1.34231 * 120.00640 * 180.27450 * 9 7 4 12 12 C 1.45193 * 117.00126 * 179.71955 * 11 9 7 13 13 C 1.53006 * 109.46665 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47328 * 299.99880 * 13 12 11 15 15 C 1.52997 * 109.47159 * 60.00263 * 13 12 11 16 16 C 1.50701 * 109.46788 * 180.02562 * 13 12 11 17 17 H 1.07996 * 120.00388 * 359.97438 * 16 13 12 18 18 C 1.37881 * 119.99872 * 179.97438 * 16 13 12 19 19 N 1.31518 * 119.99802 * 0.02562 * 18 16 13 20 20 Si 1.86804 * 119.99987 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.46919 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47018 * 120.00369 * 20 18 16 23 23 H 1.48502 * 109.47034 * 239.99895 * 20 18 16 24 24 H 1.09005 * 109.47149 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47352 * 299.99890 * 1 2 3 26 26 H 1.09003 * 109.47461 * 60.00142 * 1 2 3 27 27 H 1.08999 * 109.46992 * 240.00442 * 2 1 3 28 28 H 1.08993 * 109.47357 * 119.99994 * 2 1 3 29 29 H 1.08999 * 109.47035 * 60.00468 * 3 2 1 30 30 H 1.08996 * 109.47581 * 299.99719 * 3 2 1 31 31 H 1.08997 * 117.49836 * 145.03093 * 6 4 3 32 32 H 1.08999 * 117.50117 * 0.02562 * 6 4 3 33 33 H 1.08997 * 109.47488 * 299.99586 * 12 11 9 34 34 H 1.08997 * 109.47515 * 60.00401 * 12 11 9 35 35 H 1.08999 * 109.46873 * 60.00173 * 14 13 12 36 36 H 1.08999 * 109.47400 * 179.97438 * 14 13 12 37 37 H 1.08997 * 109.47343 * 300.00349 * 14 13 12 38 38 H 1.09003 * 109.46961 * 60.00056 * 15 13 12 39 39 H 1.09007 * 109.47020 * 179.97438 * 15 13 12 40 40 H 1.08999 * 109.47056 * 299.99836 * 15 13 12 41 41 H 0.97000 * 119.99313 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 4.0399 0.5854 -0.4826 6 6 4.2773 2.0451 1.2149 7 6 4.2763 2.7945 -0.1190 8 1 3.6510 3.6840 -0.1968 9 6 5.5685 2.8392 -0.8931 10 8 6.0092 1.8306 -1.3917 11 8 6.2331 3.9981 -1.0237 12 6 7.4737 3.9652 -1.7773 13 6 8.0826 5.3682 -1.8186 14 6 7.1020 6.3302 -2.4923 15 6 8.3648 5.8439 -0.3920 16 6 9.3700 5.3343 -2.6012 17 1 9.7192 4.4049 -3.0263 18 6 10.1021 6.4897 -2.7746 19 7 9.6770 7.6214 -2.2566 20 14 11.6982 6.4475 -3.7442 21 1 11.9532 5.0633 -4.2178 22 1 11.5921 7.3583 -4.9123 23 1 12.8180 6.8875 -2.8736 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 5.2126 1.5843 1.5325 32 1 3.6527 2.4412 2.0155 33 1 8.1722 3.2796 -1.2975 34 1 7.2727 3.6268 -2.7937 35 1 6.1707 6.3548 -1.9266 36 1 7.5356 7.3298 -2.5213 37 1 6.9010 5.9913 -3.5086 38 1 9.0635 5.1586 0.0879 39 1 8.7990 6.8433 -0.4215 40 1 7.4334 5.8685 0.1737 41 1 10.1919 8.4343 -2.3789 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813085554.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:57 Heat of formation + Delta-G solvation = -92.877394 kcal Electronic energy + Delta-G solvation = -18861.798254 eV Core-core repulsion = 15934.719160 eV Total energy + Delta-G solvation = -2927.079094 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.15219 -37.90166 -36.28765 -34.79439 -34.05156 -31.25403 -27.88947 -26.12564 -25.60514 -25.21859 -23.80094 -22.16692 -20.82452 -19.85055 -18.82777 -17.39101 -16.02389 -15.83397 -15.68185 -15.36872 -14.78734 -14.60484 -13.76901 -13.36960 -13.04421 -13.00815 -12.73105 -12.38434 -12.20932 -11.72560 -11.53705 -11.44502 -11.25249 -11.17413 -11.04313 -10.97220 -10.67005 -10.41128 -10.37480 -10.20341 -10.16907 -9.98014 -9.87252 -9.39425 -9.28368 -8.73837 -8.37461 -6.01550 -4.13041 2.48629 3.14692 3.27015 3.35400 3.40396 3.74545 4.37815 4.49121 4.63558 4.74413 4.87805 4.93602 5.12522 5.24868 5.30871 5.34906 5.50359 5.58163 5.60899 5.66536 5.81599 5.89295 6.00203 6.04021 6.11461 6.12165 6.21589 6.48527 6.76654 6.99689 7.09959 7.15894 7.17920 7.42046 7.63499 7.70829 8.06128 8.16928 8.30587 8.41064 8.87235 9.52460 10.99739 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.052629 B = 0.003590 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.900704 B = 7798.416832 C = 7919.372106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.090 4.090 4 C -0.121 4.121 5 H 0.118 0.882 6 C -0.146 4.146 7 C -0.163 4.163 8 H 0.132 0.868 9 C 0.483 3.517 10 O -0.522 6.522 11 O -0.344 6.344 12 C 0.084 3.916 13 C 0.070 3.930 14 C -0.130 4.130 15 C -0.130 4.130 16 C -0.511 4.511 17 H 0.057 0.943 18 C 0.068 3.932 19 N -0.882 5.882 20 Si 0.895 3.105 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.016 0.984 36 H 0.084 0.916 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.084 0.916 40 H 0.017 0.983 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.627 -9.515 6.215 18.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.128 4.128 4 C -0.139 4.139 5 H 0.136 0.864 6 C -0.183 4.183 7 C -0.183 4.183 8 H 0.150 0.850 9 C 0.326 3.674 10 O -0.412 6.412 11 O -0.259 6.259 12 C 0.011 3.989 13 C 0.070 3.930 14 C -0.187 4.187 15 C -0.187 4.187 16 C -0.549 4.549 17 H 0.075 0.925 18 C -0.134 4.134 19 N -0.521 5.521 20 Si 0.723 3.277 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.209 1.209 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.118 0.882 32 H 0.126 0.874 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.036 0.964 36 H 0.103 0.897 37 H 0.042 0.958 38 H 0.041 0.959 39 H 0.103 0.897 40 H 0.036 0.964 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.392 -9.581 6.058 18.320 hybrid contribution 1.079 0.008 -0.675 1.273 sum -13.313 -9.573 5.383 17.259 Atomic orbital electron populations 1.21781 0.95884 1.01574 1.01814 1.21502 0.95626 0.96504 1.02365 1.21253 0.91697 0.97384 1.02437 1.22546 0.94858 0.95299 1.01190 0.86382 1.23147 1.03136 1.01615 0.90378 1.21825 0.95687 0.99117 1.01625 0.84970 1.22478 0.85021 0.82016 0.77864 1.90608 1.68182 1.35929 1.46502 1.86509 1.37604 1.33825 1.67985 1.23678 0.79815 1.02159 0.93213 1.18246 0.93427 0.86975 0.94402 1.21770 0.96315 1.03464 0.97181 1.21771 0.97634 1.03428 0.95902 1.20988 1.05346 0.95059 1.33548 0.92466 1.24866 0.97727 0.95321 0.95486 1.69846 1.38421 0.99193 1.44600 0.86483 0.83304 0.78149 0.79757 1.19774 1.20953 1.20949 0.92801 0.92772 0.92708 0.91774 0.91797 0.91443 0.91209 0.88155 0.87438 0.92617 0.92585 0.96448 0.89717 0.95842 0.95861 0.89724 0.96408 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.12 -0.95 5.89 -26.73 -0.16 -1.11 16 3 C -0.09 -0.78 5.50 -26.73 -0.15 -0.93 16 4 C -0.12 -1.35 5.25 -90.62 -0.48 -1.82 16 5 H 0.12 1.49 7.60 -51.93 -0.39 1.09 16 6 C -0.15 -1.59 9.88 -26.73 -0.26 -1.85 16 7 C -0.16 -2.20 6.02 -91.78 -0.55 -2.75 16 8 H 0.13 1.57 8.14 -51.93 -0.42 1.15 16 9 C 0.48 8.91 7.74 36.00 0.28 9.18 16 10 O -0.52 -10.83 16.01 -18.76 -0.30 -11.13 16 11 O -0.34 -7.15 8.88 -39.26 -0.35 -7.50 16 12 C 0.08 1.93 4.26 37.16 0.16 2.08 16 13 C 0.07 1.75 0.58 -155.66 -0.09 1.66 16 14 C -0.13 -3.18 8.11 37.16 0.30 -2.88 16 15 C -0.13 -3.18 8.11 37.16 0.30 -2.88 16 16 C -0.51 -13.87 8.01 -34.44 -0.28 -14.14 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 18 C 0.07 1.82 5.15 -17.82 -0.09 1.73 16 19 N -0.88 -24.19 9.35 55.43 0.52 -23.67 16 20 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.51 7.88 -51.93 -0.41 0.10 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.11 0.91 8.03 -51.93 -0.42 0.50 16 33 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 34 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 35 H 0.02 0.38 7.68 -51.93 -0.40 -0.02 16 36 H 0.08 2.24 6.07 -51.93 -0.32 1.92 16 37 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 2.23 6.07 -51.93 -0.32 1.92 16 40 H 0.02 0.39 7.68 -51.93 -0.40 -0.01 16 41 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 334.25 15.07 5.04 5.04 Total: -1.00 -28.95 334.25 -8.02 -36.97 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -7.26 Total: -1.31 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -0.65 Total: -14.37 kcal Atomic # 7 Polarization: -24.19 SS G_CDS: 0.52 Total: -23.67 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.65 Total: -18.63 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.95 -8.02 -36.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813085554.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.908 kcal (2) G-P(sol) polarization free energy of solvation -28.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds