Wall clock time and date at job start Mon Mar 30 2020 07:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46704 * 2 1 4 4 C 1.53007 * 109.46900 * 180.02562 * 3 2 1 5 5 H 1.08997 * 115.55057 * 29.32806 * 4 3 2 6 6 C 1.52997 * 117.51656 * 243.63201 * 4 3 2 7 7 C 1.52994 * 117.50094 * 175.00219 * 4 3 2 8 8 H 1.09005 * 117.49885 * 359.97438 * 7 4 3 9 9 C 1.50696 * 117.50206 * 215.00509 * 7 4 3 10 10 O 1.20833 * 119.99655 * 359.97438 * 9 7 4 11 11 O 1.34231 * 120.00640 * 180.27450 * 9 7 4 12 12 C 1.45193 * 117.00126 * 179.71955 * 11 9 7 13 13 C 1.53006 * 109.46665 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47328 * 299.99880 * 13 12 11 15 15 C 1.52997 * 109.47159 * 60.00263 * 13 12 11 16 16 C 1.50701 * 109.46788 * 180.02562 * 13 12 11 17 17 H 1.07996 * 120.00388 * 359.97438 * 16 13 12 18 18 C 1.37881 * 119.99872 * 179.97438 * 16 13 12 19 19 N 1.31518 * 119.99802 * 0.02562 * 18 16 13 20 20 Si 1.86804 * 119.99987 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.46919 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47018 * 120.00369 * 20 18 16 23 23 H 1.48502 * 109.47034 * 239.99895 * 20 18 16 24 24 H 1.09005 * 109.47149 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47352 * 299.99890 * 1 2 3 26 26 H 1.09003 * 109.47461 * 60.00142 * 1 2 3 27 27 H 1.08999 * 109.46992 * 240.00442 * 2 1 3 28 28 H 1.08993 * 109.47357 * 119.99994 * 2 1 3 29 29 H 1.08999 * 109.47035 * 60.00468 * 3 2 1 30 30 H 1.08996 * 109.47581 * 299.99719 * 3 2 1 31 31 H 1.08997 * 117.49836 * 145.03093 * 6 4 3 32 32 H 1.08999 * 117.50117 * 0.02562 * 6 4 3 33 33 H 1.08997 * 109.47488 * 299.99586 * 12 11 9 34 34 H 1.08997 * 109.47515 * 60.00401 * 12 11 9 35 35 H 1.08999 * 109.46873 * 60.00173 * 14 13 12 36 36 H 1.08999 * 109.47400 * 179.97438 * 14 13 12 37 37 H 1.08997 * 109.47343 * 300.00349 * 14 13 12 38 38 H 1.09003 * 109.46961 * 60.00056 * 15 13 12 39 39 H 1.09007 * 109.47020 * 179.97438 * 15 13 12 40 40 H 1.08999 * 109.47056 * 299.99836 * 15 13 12 41 41 H 0.97000 * 119.99313 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 4.0399 0.5854 -0.4826 6 6 4.2773 2.0451 1.2149 7 6 4.2763 2.7945 -0.1190 8 1 3.6510 3.6840 -0.1968 9 6 5.5685 2.8392 -0.8931 10 8 6.0092 1.8306 -1.3917 11 8 6.2331 3.9981 -1.0237 12 6 7.4737 3.9652 -1.7773 13 6 8.0826 5.3682 -1.8186 14 6 7.1020 6.3302 -2.4923 15 6 8.3648 5.8439 -0.3920 16 6 9.3700 5.3343 -2.6012 17 1 9.7192 4.4049 -3.0263 18 6 10.1021 6.4897 -2.7746 19 7 9.6770 7.6214 -2.2566 20 14 11.6982 6.4475 -3.7442 21 1 11.9532 5.0633 -4.2178 22 1 11.5921 7.3583 -4.9123 23 1 12.8180 6.8875 -2.8736 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 5.2126 1.5843 1.5325 32 1 3.6527 2.4412 2.0155 33 1 8.1722 3.2796 -1.2975 34 1 7.2727 3.6268 -2.7937 35 1 6.1707 6.3548 -1.9266 36 1 7.5356 7.3298 -2.5213 37 1 6.9010 5.9913 -3.5086 38 1 9.0635 5.1586 0.0879 39 1 8.7990 6.8433 -0.4215 40 1 7.4334 5.8685 0.1737 41 1 10.1919 8.4343 -2.3789 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813085554.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:57 Heat of formation + Delta-G solvation = -105.791394 kcal Electronic energy + Delta-G solvation = -18862.358247 eV Core-core repulsion = 15934.719160 eV Total energy + Delta-G solvation = -2927.639087 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.62149 -39.11863 -37.85643 -36.59573 -34.75782 -33.28398 -28.75745 -27.69742 -27.59818 -27.21109 -25.18730 -22.87367 -21.73312 -21.09532 -20.73772 -18.82352 -17.79965 -17.53400 -17.29742 -16.66422 -16.01019 -15.59472 -15.09268 -14.86117 -14.71969 -14.24690 -13.93828 -13.53341 -13.38785 -13.22637 -13.07145 -12.90573 -12.84528 -12.62372 -12.35809 -12.22584 -12.15723 -11.95778 -11.75642 -11.67921 -11.62550 -11.32292 -11.25182 -11.17596 -10.91680 -10.75263 -10.42743 -8.06695 -6.25078 1.08489 1.41003 1.43585 1.53642 1.74866 2.43835 2.74901 3.16589 3.59403 3.65500 3.77956 4.10541 4.19229 4.23055 4.25042 4.30683 4.38181 4.57567 4.63113 4.79084 4.83920 4.88027 4.94893 4.99425 5.02036 5.05904 5.17663 5.20372 5.20991 5.34354 5.36749 5.42414 5.53229 5.57931 5.61283 5.64836 6.05008 6.15318 6.34831 6.74551 6.82183 7.43072 8.93326 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.052629 B = 0.003590 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.900704 B = 7798.416832 C = 7919.372106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.085 4.085 4 C -0.111 4.111 5 H 0.099 0.901 6 C -0.129 4.129 7 C -0.181 4.181 8 H 0.152 0.848 9 C 0.477 3.523 10 O -0.551 6.551 11 O -0.350 6.350 12 C 0.096 3.904 13 C 0.061 3.939 14 C -0.119 4.119 15 C -0.119 4.119 16 C -0.535 4.535 17 H 0.048 0.952 18 C 0.028 3.972 19 N -0.900 5.900 20 Si 0.954 3.046 21 H -0.273 1.273 22 H -0.279 1.279 23 H -0.278 1.278 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.141 0.859 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.032 0.968 36 H 0.065 0.935 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.064 0.936 40 H 0.032 0.968 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.907 -9.766 7.124 19.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.122 4.122 4 C -0.129 4.129 5 H 0.117 0.883 6 C -0.166 4.166 7 C -0.200 4.200 8 H 0.170 0.830 9 C 0.323 3.677 10 O -0.443 6.443 11 O -0.265 6.265 12 C 0.023 3.977 13 C 0.061 3.939 14 C -0.177 4.177 15 C -0.177 4.177 16 C -0.573 4.573 17 H 0.066 0.934 18 C -0.172 4.172 19 N -0.538 5.538 20 Si 0.780 3.220 21 H -0.198 1.198 22 H -0.204 1.204 23 H -0.204 1.204 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.159 0.841 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.083 0.917 37 H 0.038 0.962 38 H 0.039 0.961 39 H 0.083 0.917 40 H 0.051 0.949 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.687 -9.836 6.975 19.786 hybrid contribution 1.440 0.037 -0.936 1.717 sum -14.247 -9.799 6.039 18.316 Atomic orbital electron populations 1.21767 0.94903 1.02042 1.02182 1.21500 0.96451 0.95946 1.02134 1.21275 0.89489 0.98101 1.03377 1.22614 0.96387 0.93100 1.00823 0.88293 1.23340 1.03165 0.99864 0.90197 1.21981 0.93511 1.01295 1.03191 0.82996 1.23512 0.85979 0.80768 0.77451 1.90591 1.69262 1.36618 1.47843 1.86503 1.36822 1.35388 1.67833 1.23258 0.80831 1.00633 0.93010 1.18267 0.93097 0.88160 0.94375 1.21625 0.96701 1.02105 0.97241 1.21625 0.98092 1.02024 0.95915 1.21230 1.06681 0.94983 1.34410 0.93376 1.25526 1.00442 0.95000 0.96257 1.69947 1.39328 0.99525 1.44974 0.85571 0.79860 0.77998 0.78574 1.19806 1.20435 1.20410 0.92357 0.91950 0.92787 0.92750 0.91411 0.89503 0.91231 0.89034 0.84061 0.93448 0.93489 0.94920 0.91656 0.96160 0.96135 0.91670 0.94896 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 71.98 0.71 -0.98 16 2 C -0.12 -1.66 5.89 30.59 0.18 -1.48 16 3 C -0.09 -1.24 5.50 30.60 0.17 -1.08 16 4 C -0.11 -2.27 5.25 -10.79 -0.06 -2.33 16 5 H 0.10 2.44 7.60 -2.39 -0.02 2.42 16 6 C -0.13 -2.46 9.88 30.59 0.30 -2.16 16 7 C -0.18 -4.53 6.02 -11.54 -0.07 -4.60 16 8 H 0.15 3.20 8.14 -2.38 -0.02 3.18 16 9 C 0.48 17.43 7.74 71.23 0.55 17.99 16 10 O -0.55 -23.14 16.01 21.94 0.35 -22.79 16 11 O -0.35 -14.42 8.88 -51.42 -0.46 -14.88 16 12 C 0.10 4.45 4.26 71.98 0.31 4.76 16 13 C 0.06 3.08 0.58 -52.93 -0.03 3.05 16 14 C -0.12 -5.84 8.11 71.98 0.58 -5.26 16 15 C -0.12 -5.82 8.11 71.98 0.58 -5.24 16 16 C -0.54 -29.31 8.01 25.60 0.21 -29.11 16 17 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 18 C 0.03 1.50 5.15 84.66 0.44 1.93 16 19 N -0.90 -49.39 9.35 21.45 0.20 -49.19 16 20 Si 0.95 43.04 29.54 68.60 2.03 45.07 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 23 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 24 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 25 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.09 0.97 7.88 -2.39 -0.02 0.95 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.14 1.78 8.03 -2.39 -0.02 1.76 16 33 H 0.05 2.23 8.13 -2.39 -0.02 2.21 16 34 H 0.05 2.22 8.13 -2.39 -0.02 2.20 16 35 H 0.03 1.45 7.68 -2.39 -0.02 1.43 16 36 H 0.06 3.46 6.07 -2.39 -0.01 3.44 16 37 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.06 3.45 6.07 -2.38 -0.01 3.43 16 40 H 0.03 1.46 7.68 -2.39 -0.02 1.44 16 41 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 Total: -1.00 -61.70 334.25 6.97 -54.73 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 0.97 Total: 11.56 kcal Atomic # 6 Polarization: -28.37 SS G_CDS: 3.87 Total: -24.50 kcal Atomic # 7 Polarization: -49.39 SS G_CDS: 0.20 Total: -49.19 kcal Atomic # 8 Polarization: -37.56 SS G_CDS: -0.11 Total: -37.67 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -61.70 6.97 -54.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813085554.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.060 kcal (2) G-P(sol) polarization free energy of solvation -61.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds