Wall clock time and date at job start Mon Mar 30 2020 06:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46952 * 2 1 4 4 C 1.53008 * 109.46747 * 119.99521 * 2 1 3 5 5 C 1.53000 * 115.55731 * 34.31373 * 4 2 1 6 6 C 1.53072 * 117.49321 * 248.60203 * 4 2 1 7 7 C 1.52993 * 117.49571 * 179.97438 * 4 2 1 8 8 H 1.09004 * 117.50141 * 359.97438 * 7 4 2 9 9 C 1.53008 * 117.49796 * 214.97867 * 7 4 2 10 10 O 1.45193 * 109.47238 * 175.08834 * 9 7 4 11 11 C 1.34233 * 116.99929 * 180.02562 * 10 9 7 12 12 O 1.20818 * 119.99806 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.99659 * 180.02562 * 11 10 9 14 14 C 1.53003 * 109.46707 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.47038 * 180.02562 * 14 13 11 16 16 H 1.08006 * 120.00159 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00120 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00089 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99938 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 269.99556 * 19 17 15 21 21 H 1.48503 * 109.47261 * 149.99737 * 19 17 15 22 22 H 1.48500 * 109.47454 * 29.99730 * 19 17 15 23 23 H 1.08997 * 109.47089 * 300.00911 * 1 2 3 24 24 H 1.09003 * 109.46699 * 60.00575 * 1 2 3 25 25 H 1.08995 * 109.47229 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46851 * 239.99586 * 2 1 3 27 27 H 1.08996 * 109.47240 * 59.99789 * 3 2 1 28 28 H 1.09004 * 109.46383 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.46949 * 299.99272 * 3 2 1 30 30 H 1.09007 * 109.46823 * 205.68798 * 5 4 2 31 31 H 1.08998 * 109.47509 * 325.68522 * 5 4 2 32 32 H 1.08997 * 109.47110 * 85.68955 * 5 4 2 33 33 H 1.09001 * 117.50954 * 145.03663 * 6 4 2 34 34 H 1.08996 * 117.49629 * 0.02562 * 6 4 2 35 35 H 1.09001 * 109.46884 * 55.08806 * 9 7 4 36 36 H 1.08991 * 109.47091 * 295.09172 * 9 7 4 37 37 H 1.08996 * 109.47466 * 59.99984 * 13 11 10 38 38 H 1.08996 * 109.47158 * 299.99764 * 13 11 10 39 39 H 1.09003 * 109.46825 * 60.00385 * 14 13 11 40 40 H 1.08996 * 109.47396 * 299.99958 * 14 13 11 41 41 H 0.96998 * 119.99255 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.1851 -1.8962 1.7284 6 6 2.7426 0.1232 2.3154 7 6 3.5549 -0.8285 1.4341 8 1 4.1884 -0.3858 0.6654 9 6 4.0988 -2.1023 2.0844 10 8 5.5503 -2.0721 2.0684 11 6 6.1877 -3.1245 2.6050 12 8 5.5537 -4.0408 3.0721 13 6 7.6941 -3.1631 2.6248 14 6 8.1623 -4.4605 3.2870 15 6 9.6687 -4.4988 3.3073 16 1 10.2355 -3.6799 2.8894 17 6 10.3235 -5.5798 3.8586 18 7 9.6334 -6.5772 4.3671 19 14 12.1907 -5.6269 3.8845 20 1 12.6868 -6.2750 2.6438 21 1 12.6500 -6.4016 5.0652 22 1 12.7198 -4.2417 3.9650 23 1 -0.3633 0.5140 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.6767 1.9564 0.8899 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.3349 -2.0421 2.7983 31 1 0.1338 -1.6835 1.5345 32 1 1.4775 -2.8000 1.1940 33 1 2.5957 -0.1584 3.3582 34 1 2.8409 1.1921 2.1265 35 1 3.7474 -2.9721 1.5293 36 1 3.7480 -2.1627 3.1145 37 1 8.0720 -2.3106 3.1891 38 1 8.0721 -3.1190 1.6034 39 1 7.7844 -5.3132 2.7229 40 1 7.7843 -4.5041 4.3083 41 1 8.6638 -6.5524 4.3539 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813087266.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:42 Heat of formation + Delta-G solvation = -97.005538 kcal Electronic energy + Delta-G solvation = -18534.401202 eV Core-core repulsion = 15607.143098 eV Total energy + Delta-G solvation = -2927.258104 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.21859 -39.37785 -36.17165 -33.89766 -33.69718 -31.05743 -29.64250 -27.89704 -26.41186 -25.21098 -23.32173 -22.32572 -20.75554 -20.03251 -18.34417 -17.47408 -16.70727 -16.29322 -16.02385 -15.55154 -14.84904 -14.39510 -14.07134 -13.72374 -13.44524 -13.19402 -13.04773 -12.76212 -12.47044 -12.28272 -12.09298 -11.92145 -11.65666 -11.59172 -11.41236 -11.17999 -10.87378 -10.84831 -10.65875 -10.19598 -10.16937 -10.07667 -10.00997 -9.85092 -9.63392 -8.61201 -8.32955 -6.36693 -4.07477 2.75404 2.94422 3.44172 3.48101 3.53082 3.63796 4.32393 4.43548 4.53859 4.56484 4.62362 4.80868 4.95409 5.13504 5.21745 5.29442 5.33536 5.41295 5.42277 5.49719 5.51391 5.54020 5.59411 5.64118 5.65039 5.75471 5.82032 5.95433 6.00123 6.02300 6.03105 6.10663 6.14172 6.55681 6.86859 7.40713 7.45376 8.10335 8.31082 8.45100 8.86290 9.66150 11.04399 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.056857 B = 0.003098 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.342602 B = 9034.943200 C = 9329.259863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.059 4.059 3 C -0.152 4.152 4 C -0.110 4.110 5 C -0.128 4.128 6 C -0.172 4.172 7 C -0.146 4.146 8 H 0.116 0.884 9 C 0.097 3.903 10 O -0.363 6.363 11 C 0.457 3.543 12 O -0.510 6.510 13 C -0.096 4.096 14 C 0.020 3.980 15 C -0.609 4.609 16 H 0.053 0.947 17 C 0.016 3.984 18 N -0.910 5.910 19 Si 1.074 2.926 20 H -0.287 1.287 21 H -0.284 1.284 22 H -0.288 1.288 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.017 0.983 40 H 0.017 0.983 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.360 15.492 -8.312 24.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.078 4.078 3 C -0.209 4.209 4 C -0.110 4.110 5 C -0.185 4.185 6 C -0.208 4.208 7 C -0.164 4.164 8 H 0.134 0.866 9 C 0.023 3.977 10 O -0.281 6.281 11 C 0.300 3.700 12 O -0.397 6.397 13 C -0.134 4.134 14 C -0.017 4.017 15 C -0.647 4.647 16 H 0.071 0.929 17 C -0.189 4.189 18 N -0.546 5.546 19 Si 0.902 3.098 20 H -0.214 1.214 21 H -0.210 1.210 22 H -0.214 1.214 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.112 0.888 34 H 0.121 0.879 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.035 0.965 40 H 0.035 0.965 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.296 14.304 -7.695 23.008 hybrid contribution -1.444 0.884 -0.440 1.749 sum -17.740 15.188 -8.135 24.730 Atomic orbital electron populations 1.21905 0.94901 1.01938 1.01651 1.20587 0.95710 0.95514 0.95948 1.21983 1.01295 0.95821 1.01764 1.21683 0.92209 0.99331 0.97766 1.21531 0.99704 0.96252 1.01011 1.23500 1.03255 0.97982 0.96092 1.22296 0.93484 0.97678 1.02930 0.86619 1.22389 0.77801 0.96947 1.00570 1.86535 1.21509 1.45601 1.74479 1.24737 0.92972 0.78797 0.73449 1.90617 1.68874 1.37069 1.43168 1.21599 0.83667 1.03981 1.04152 1.19137 0.96721 0.90200 0.95656 1.22009 0.90815 1.07908 1.44000 0.92906 1.25887 1.07219 0.92432 0.93331 1.70717 1.09387 1.32136 1.42332 0.83475 0.73953 0.75533 0.76799 1.21405 1.20958 1.21407 0.92511 0.92759 0.92106 0.90789 0.92195 0.92365 0.92655 0.92287 0.91098 0.92009 0.88769 0.87854 0.91187 0.91490 0.88794 0.88799 0.96511 0.96505 0.91740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 8.20 37.16 0.30 -0.66 16 2 C -0.06 -0.46 3.15 -90.61 -0.29 -0.74 16 3 C -0.15 -1.07 7.79 37.16 0.29 -0.78 16 4 C -0.11 -1.00 2.47 -154.47 -0.38 -1.38 16 5 C -0.13 -1.13 8.50 37.16 0.32 -0.81 16 6 C -0.17 -1.62 8.86 -26.67 -0.24 -1.86 16 7 C -0.15 -1.62 5.43 -90.59 -0.49 -2.12 16 8 H 0.12 1.29 7.61 -51.93 -0.40 0.89 16 9 C 0.10 1.38 4.83 37.16 0.18 1.56 16 10 O -0.36 -6.27 10.22 -39.27 -0.40 -6.67 16 11 C 0.46 9.30 7.96 36.00 0.29 9.59 16 12 O -0.51 -11.84 15.73 -18.74 -0.29 -12.13 16 13 C -0.10 -2.04 5.75 -27.88 -0.16 -2.20 16 14 C 0.02 0.53 3.57 -27.88 -0.10 0.43 16 15 C -0.61 -17.48 9.11 -34.44 -0.31 -17.80 16 16 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 17 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 18 N -0.91 -28.64 13.65 55.43 0.76 -27.88 16 19 Si 1.07 25.43 29.90 -169.99 -5.08 20.34 16 20 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 23 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.06 0.39 6.45 -51.93 -0.33 0.06 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.41 6.98 -51.93 -0.36 0.04 16 28 H 0.06 0.44 7.07 -51.93 -0.37 0.07 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.54 7.90 -51.92 -0.41 0.13 16 31 H 0.07 0.52 5.58 -51.93 -0.29 0.23 16 32 H 0.06 0.57 7.83 -51.93 -0.41 0.16 16 33 H 0.09 0.90 7.94 -51.93 -0.41 0.49 16 34 H 0.10 0.86 5.85 -51.93 -0.30 0.56 16 35 H 0.07 1.01 7.76 -51.93 -0.40 0.60 16 36 H 0.07 0.96 7.87 -51.93 -0.41 0.55 16 37 H 0.09 1.84 8.14 -51.93 -0.42 1.42 16 38 H 0.09 1.84 8.14 -51.93 -0.42 1.41 16 39 H 0.02 0.48 7.97 -51.93 -0.41 0.06 16 40 H 0.02 0.48 7.97 -51.93 -0.41 0.06 16 41 H 0.27 8.65 7.22 -40.82 -0.29 8.36 16 LS Contribution 330.50 15.07 4.98 4.98 Total: -1.00 -32.42 330.50 -7.69 -40.11 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -6.95 Total: -2.33 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: -0.69 Total: -16.41 kcal Atomic # 7 Polarization: -28.64 SS G_CDS: 0.76 Total: -27.88 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.70 Total: -18.81 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -5.08 Total: 20.34 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.42 -7.69 -40.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813087266.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.900 kcal (2) G-P(sol) polarization free energy of solvation -32.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds