Wall clock time and date at job start Mon Mar 30 2020 06:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46952 * 2 1 4 4 C 1.53008 * 109.46747 * 119.99521 * 2 1 3 5 5 C 1.53000 * 115.55731 * 34.31373 * 4 2 1 6 6 C 1.53072 * 117.49321 * 248.60203 * 4 2 1 7 7 C 1.52993 * 117.49571 * 179.97438 * 4 2 1 8 8 H 1.09004 * 117.50141 * 359.97438 * 7 4 2 9 9 C 1.53008 * 117.49796 * 214.97867 * 7 4 2 10 10 O 1.45193 * 109.47238 * 175.08834 * 9 7 4 11 11 C 1.34233 * 116.99929 * 180.02562 * 10 9 7 12 12 O 1.20818 * 119.99806 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.99659 * 180.02562 * 11 10 9 14 14 C 1.53003 * 109.46707 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.47038 * 180.02562 * 14 13 11 16 16 H 1.08006 * 120.00159 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00120 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00089 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99938 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 269.99556 * 19 17 15 21 21 H 1.48503 * 109.47261 * 149.99737 * 19 17 15 22 22 H 1.48500 * 109.47454 * 29.99730 * 19 17 15 23 23 H 1.08997 * 109.47089 * 300.00911 * 1 2 3 24 24 H 1.09003 * 109.46699 * 60.00575 * 1 2 3 25 25 H 1.08995 * 109.47229 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46851 * 239.99586 * 2 1 3 27 27 H 1.08996 * 109.47240 * 59.99789 * 3 2 1 28 28 H 1.09004 * 109.46383 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.46949 * 299.99272 * 3 2 1 30 30 H 1.09007 * 109.46823 * 205.68798 * 5 4 2 31 31 H 1.08998 * 109.47509 * 325.68522 * 5 4 2 32 32 H 1.08997 * 109.47110 * 85.68955 * 5 4 2 33 33 H 1.09001 * 117.50954 * 145.03663 * 6 4 2 34 34 H 1.08996 * 117.49629 * 0.02562 * 6 4 2 35 35 H 1.09001 * 109.46884 * 55.08806 * 9 7 4 36 36 H 1.08991 * 109.47091 * 295.09172 * 9 7 4 37 37 H 1.08996 * 109.47466 * 59.99984 * 13 11 10 38 38 H 1.08996 * 109.47158 * 299.99764 * 13 11 10 39 39 H 1.09003 * 109.46825 * 60.00385 * 14 13 11 40 40 H 1.08996 * 109.47396 * 299.99958 * 14 13 11 41 41 H 0.96998 * 119.99255 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.1851 -1.8962 1.7284 6 6 2.7426 0.1232 2.3154 7 6 3.5549 -0.8285 1.4341 8 1 4.1884 -0.3858 0.6654 9 6 4.0988 -2.1023 2.0844 10 8 5.5503 -2.0721 2.0684 11 6 6.1877 -3.1245 2.6050 12 8 5.5537 -4.0408 3.0721 13 6 7.6941 -3.1631 2.6248 14 6 8.1623 -4.4605 3.2870 15 6 9.6687 -4.4988 3.3073 16 1 10.2355 -3.6799 2.8894 17 6 10.3235 -5.5798 3.8586 18 7 9.6334 -6.5772 4.3671 19 14 12.1907 -5.6269 3.8845 20 1 12.6868 -6.2750 2.6438 21 1 12.6500 -6.4016 5.0652 22 1 12.7198 -4.2417 3.9650 23 1 -0.3633 0.5140 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.6767 1.9564 0.8899 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.3349 -2.0421 2.7983 31 1 0.1338 -1.6835 1.5345 32 1 1.4775 -2.8000 1.1940 33 1 2.5957 -0.1584 3.3582 34 1 2.8409 1.1921 2.1265 35 1 3.7474 -2.9721 1.5293 36 1 3.7480 -2.1627 3.1145 37 1 8.0720 -2.3106 3.1891 38 1 8.0721 -3.1190 1.6034 39 1 7.7844 -5.3132 2.7229 40 1 7.7843 -4.5041 4.3083 41 1 8.6638 -6.5524 4.3539 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813087266.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:41 Heat of formation + Delta-G solvation = -113.941776 kcal Electronic energy + Delta-G solvation = -18535.135612 eV Core-core repulsion = 15607.143098 eV Total energy + Delta-G solvation = -2927.992514 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.66071 -40.32727 -37.70278 -36.03389 -34.42922 -33.06063 -30.33072 -29.13072 -27.32642 -26.88592 -24.34703 -23.97607 -21.72728 -21.67266 -19.33071 -19.02951 -18.41671 -17.81049 -17.45845 -16.67478 -15.63002 -15.60913 -15.44835 -15.33803 -14.82726 -14.44408 -14.02809 -13.93218 -13.67151 -13.65442 -13.39359 -12.90636 -12.72092 -12.71435 -12.34567 -12.21359 -12.13754 -12.13358 -12.05969 -11.87101 -11.80924 -11.59400 -11.50294 -10.80593 -10.75807 -10.57648 -10.51597 -8.72216 -6.44543 1.10324 1.52901 1.57854 1.65294 1.82530 2.58370 2.67303 3.14612 3.44806 3.67061 3.69972 3.89808 3.95197 4.07618 4.17953 4.22954 4.26814 4.27410 4.41231 4.51491 4.59604 4.73882 4.78929 4.81013 4.85732 4.88175 4.99970 5.05783 5.11833 5.14899 5.17425 5.19806 5.26779 5.33265 5.36775 5.46452 5.51622 5.88050 6.14804 6.47348 6.70339 7.40639 8.68271 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.056857 B = 0.003098 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.342602 B = 9034.943200 C = 9329.259863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.060 4.060 3 C -0.151 4.151 4 C -0.098 4.098 5 C -0.132 4.132 6 C -0.165 4.165 7 C -0.161 4.161 8 H 0.118 0.882 9 C 0.094 3.906 10 O -0.354 6.354 11 C 0.465 3.535 12 O -0.546 6.546 13 C -0.088 4.088 14 C 0.023 3.977 15 C -0.620 4.620 16 H 0.069 0.931 17 C -0.043 4.043 18 N -0.939 5.939 19 Si 1.127 2.873 20 H -0.271 1.271 21 H -0.286 1.286 22 H -0.261 1.261 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.088 0.912 32 H 0.054 0.946 33 H 0.092 0.908 34 H 0.119 0.881 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.116 0.884 38 H 0.116 0.884 39 H -0.013 1.013 40 H -0.013 1.013 41 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.163 17.659 -9.367 26.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.078 4.078 3 C -0.208 4.208 4 C -0.098 4.098 5 C -0.188 4.188 6 C -0.201 4.201 7 C -0.179 4.179 8 H 0.136 0.864 9 C 0.021 3.979 10 O -0.271 6.271 11 C 0.310 3.690 12 O -0.436 6.436 13 C -0.125 4.125 14 C -0.015 4.015 15 C -0.657 4.657 16 H 0.087 0.913 17 C -0.240 4.240 18 N -0.576 5.576 19 Si 0.947 3.053 20 H -0.196 1.196 21 H -0.212 1.212 22 H -0.185 1.185 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.106 0.894 32 H 0.073 0.927 33 H 0.110 0.890 34 H 0.137 0.863 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.005 0.995 40 H 0.005 0.995 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -16.126 16.515 -8.776 24.694 hybrid contribution -1.617 0.250 -0.136 1.642 sum -17.743 16.765 -8.912 25.986 Atomic orbital electron populations 1.21891 0.93827 1.02212 1.02287 1.20629 0.96585 0.95761 0.94855 1.21975 1.00944 0.95344 1.02492 1.21800 0.90507 0.99161 0.98300 1.21583 1.00812 0.95944 1.00510 1.23587 1.02013 0.98566 0.95951 1.22237 0.94884 0.96913 1.03864 0.86401 1.22640 0.75745 0.98760 1.00772 1.86504 1.23429 1.43771 1.73384 1.24466 0.92786 0.78843 0.72877 1.90611 1.69551 1.38568 1.44914 1.21377 0.84551 1.01534 1.05085 1.18973 0.96209 0.92200 0.94076 1.22462 0.91824 1.08216 1.43205 0.91271 1.27658 1.12072 0.91960 0.92320 1.70875 1.08342 1.33710 1.44671 0.82832 0.68035 0.77128 0.77306 1.19634 1.21161 1.18505 0.92225 0.91810 0.92029 0.91140 0.91727 0.92911 0.91711 0.92909 0.89355 0.92727 0.88953 0.86328 0.91692 0.91865 0.86627 0.86595 0.99495 0.99489 0.93763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 8.20 71.98 0.59 -0.99 16 2 C -0.06 -0.81 3.15 -10.79 -0.03 -0.84 16 3 C -0.15 -1.77 7.79 71.98 0.56 -1.21 16 4 C -0.10 -1.63 2.47 -52.16 -0.13 -1.76 16 5 C -0.13 -2.19 8.50 71.98 0.61 -1.58 16 6 C -0.16 -2.83 8.86 30.63 0.27 -2.56 16 7 C -0.16 -3.41 5.43 -10.78 -0.06 -3.46 16 8 H 0.12 2.46 7.61 -2.38 -0.02 2.45 16 9 C 0.09 2.66 4.83 71.98 0.35 3.01 16 10 O -0.35 -11.98 10.22 -51.44 -0.53 -12.50 16 11 C 0.46 18.98 7.96 71.24 0.57 19.55 16 12 O -0.55 -26.10 15.73 21.99 0.35 -25.76 16 13 C -0.09 -3.67 5.75 29.85 0.17 -3.50 16 14 C 0.02 1.24 3.57 29.85 0.11 1.35 16 15 C -0.62 -35.42 9.11 25.60 0.23 -35.19 16 16 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 17 C -0.04 -2.54 5.46 84.65 0.46 -2.08 16 18 N -0.94 -60.52 13.65 21.45 0.29 -60.23 16 19 Si 1.13 50.09 29.90 68.60 2.05 52.14 16 20 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 21 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 23 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.06 0.66 6.45 -2.39 -0.02 0.64 16 26 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.06 0.70 6.98 -2.39 -0.02 0.69 16 28 H 0.05 0.68 7.07 -2.39 -0.02 0.66 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.05 0.94 7.90 -2.38 -0.02 0.92 16 31 H 0.09 1.15 5.58 -2.39 -0.01 1.14 16 32 H 0.05 0.99 7.83 -2.39 -0.02 0.97 16 33 H 0.09 1.64 7.94 -2.39 -0.02 1.62 16 34 H 0.12 1.69 5.85 -2.39 -0.01 1.67 16 35 H 0.06 1.89 7.76 -2.39 -0.02 1.88 16 36 H 0.06 1.83 7.87 -2.39 -0.02 1.81 16 37 H 0.12 4.33 8.14 -2.39 -0.02 4.31 16 38 H 0.12 4.33 8.14 -2.39 -0.02 4.31 16 39 H -0.01 -0.80 7.97 -2.39 -0.02 -0.82 16 40 H -0.01 -0.80 7.97 -2.39 -0.02 -0.82 16 41 H 0.25 16.87 7.22 -92.71 -0.67 16.20 16 Total: -1.00 -70.73 330.50 6.95 -63.78 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 1.09 Total: 11.83 kcal Atomic # 6 Polarization: -32.97 SS G_CDS: 3.70 Total: -29.26 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: 0.29 Total: -60.23 kcal Atomic # 8 Polarization: -38.08 SS G_CDS: -0.18 Total: -38.26 kcal Atomic # 14 Polarization: 50.09 SS G_CDS: 2.05 Total: 52.14 kcal Total: -70.73 6.95 -63.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813087266.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.161 kcal (2) G-P(sol) polarization free energy of solvation -70.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds