Wall clock time and date at job start Mon Mar 30 2020 06:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.53000 * 115.54590 * 325.71834 * 4 2 1 6 6 C 1.53001 * 117.50076 * 111.39101 * 4 2 1 7 7 C 1.52995 * 117.49917 * 180.02562 * 4 2 1 8 8 H 1.09005 * 117.50056 * 359.97438 * 7 4 2 9 9 C 1.53000 * 117.50310 * 145.01866 * 7 4 2 10 10 O 1.45196 * 109.47358 * 184.99872 * 9 7 4 11 11 C 1.34232 * 116.99911 * 179.97438 * 10 9 7 12 12 O 1.20821 * 119.99951 * 0.02562 * 11 10 9 13 13 C 1.50696 * 120.00115 * 179.97438 * 11 10 9 14 14 C 1.53005 * 109.47398 * 179.97438 * 13 11 10 15 15 C 1.50700 * 109.47164 * 179.97438 * 14 13 11 16 16 H 1.07997 * 120.00186 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99897 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99698 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99856 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47149 * 60.00731 * 19 17 15 21 21 H 1.48505 * 109.46799 * 180.02562 * 19 17 15 22 22 H 1.48491 * 109.47482 * 300.00174 * 19 17 15 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 28 28 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 30 30 H 1.08993 * 109.46947 * 34.41910 * 5 4 2 31 31 H 1.09005 * 109.46765 * 154.42174 * 5 4 2 32 32 H 1.09005 * 109.46997 * 274.41510 * 5 4 2 33 33 H 1.09000 * 117.49788 * 214.98193 * 6 4 2 34 34 H 1.09001 * 117.49697 * 359.97438 * 6 4 2 35 35 H 1.09004 * 109.46675 * 304.99970 * 9 7 4 36 36 H 1.09004 * 109.46946 * 64.99835 * 9 7 4 37 37 H 1.09003 * 109.47317 * 300.00511 * 13 11 10 38 38 H 1.09007 * 109.47177 * 60.00150 * 13 11 10 39 39 H 1.08995 * 109.46824 * 300.00339 * 14 13 11 40 40 H 1.09000 * 109.46393 * 59.99823 * 14 13 11 41 41 H 0.97004 * 119.99595 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.1845 -0.5492 2.5060 6 6 2.7422 -2.0662 1.0513 7 6 3.5550 -0.8277 1.4346 8 1 4.1884 -0.3841 0.6663 9 6 4.0990 -0.7538 2.8627 10 8 5.5505 -0.7531 2.8283 11 6 6.1880 -0.6912 4.0080 12 8 5.5541 -0.6399 5.0352 13 6 7.6943 -0.6870 4.0511 14 6 8.1627 -0.6105 5.5057 15 6 9.6691 -0.6068 5.5489 16 1 10.2358 -0.6539 4.6307 17 6 10.3239 -0.5423 6.7605 18 7 9.6338 -0.4845 7.8786 19 14 12.1911 -0.5371 6.8139 20 1 12.7044 0.6385 6.0659 21 1 12.6456 -0.4630 8.2258 22 1 12.7076 -1.7831 6.1929 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.6768 1.9562 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 0.1333 -0.4899 2.2246 31 1 1.3360 -1.4017 3.1682 32 1 1.4752 0.3667 3.0207 33 1 2.5950 -2.8283 1.8166 34 1 2.8404 -2.4373 0.0311 35 1 3.7463 0.1611 3.3389 36 1 3.7494 -1.6167 3.4297 37 1 8.0735 -1.6012 3.5945 38 1 8.0711 0.1764 3.5026 39 1 7.7835 0.3040 5.9618 40 1 7.7859 -1.4735 6.0545 41 1 10.0945 -0.4387 8.7310 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813087268.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:44 Heat of formation + Delta-G solvation = -95.753524 kcal Electronic energy + Delta-G solvation = -18529.517004 eV Core-core repulsion = 15602.313191 eV Total energy + Delta-G solvation = -2927.203813 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.09689 -39.20184 -36.05350 -33.86454 -33.56040 -31.14449 -29.03139 -27.77609 -27.13446 -25.67923 -22.74436 -22.20743 -20.95242 -19.79349 -18.36985 -17.30510 -16.48242 -16.14571 -15.70716 -15.49683 -14.73494 -14.44932 -14.08933 -13.86102 -13.47682 -13.15508 -12.88480 -12.72535 -12.46848 -12.25993 -12.16729 -11.83682 -11.43758 -11.39228 -11.35710 -11.13395 -10.93696 -10.75882 -10.65268 -10.59552 -10.03563 -10.00814 -9.82180 -9.76184 -9.46390 -9.17451 -8.36464 -6.00415 -4.05325 2.86715 3.02389 3.33625 3.38099 3.40209 3.56815 4.33568 4.45306 4.47478 4.58438 4.68775 4.94687 5.02250 5.17684 5.19458 5.34830 5.37979 5.40059 5.49205 5.54399 5.59943 5.62832 5.64761 5.65446 5.70338 5.79070 5.85081 5.99002 6.04759 6.09274 6.14746 6.21552 6.23714 6.69409 6.98704 7.67537 7.75089 7.99362 8.28137 8.44841 9.01671 9.58556 11.10613 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.054383 B = 0.003119 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.747292 B = 8974.367022 C = 9110.926358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.058 4.058 3 C -0.147 4.147 4 C -0.109 4.109 5 C -0.127 4.127 6 C -0.168 4.168 7 C -0.144 4.144 8 H 0.116 0.884 9 C 0.097 3.903 10 O -0.365 6.365 11 C 0.456 3.544 12 O -0.507 6.507 13 C -0.103 4.103 14 C 0.033 3.967 15 C -0.529 4.529 16 H 0.058 0.942 17 C 0.059 3.941 18 N -0.890 5.890 19 Si 0.896 3.104 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 H 0.053 0.947 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.026 0.974 40 H 0.025 0.975 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.273 0.189 -16.487 23.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.076 4.076 3 C -0.205 4.205 4 C -0.110 4.110 5 C -0.184 4.184 6 C -0.205 4.205 7 C -0.162 4.162 8 H 0.134 0.866 9 C 0.023 3.977 10 O -0.283 6.283 11 C 0.300 3.700 12 O -0.394 6.394 13 C -0.141 4.141 14 C -0.004 4.004 15 C -0.567 4.567 16 H 0.076 0.924 17 C -0.143 4.143 18 N -0.528 5.528 19 Si 0.724 3.276 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.044 0.956 40 H 0.044 0.956 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.487 0.216 -15.972 23.684 hybrid contribution 0.934 -0.039 0.206 0.957 sum -16.553 0.177 -15.766 22.860 Atomic orbital electron populations 1.21907 0.94950 1.01788 1.01768 1.20652 0.95691 0.95933 0.95357 1.21835 1.01459 0.95523 1.01636 1.21646 0.92353 0.99695 0.97262 1.21519 0.99641 1.02165 0.95081 1.23369 1.03403 0.90918 1.02788 1.22269 0.93437 1.03176 0.97315 0.86616 1.22365 0.77982 1.02161 0.95176 1.86539 1.21359 1.84597 1.35807 1.24757 0.92995 0.71642 0.80618 1.90627 1.68832 1.45067 1.34882 1.21758 0.83661 1.03965 1.04700 1.19011 0.95619 0.98832 0.86923 1.21126 0.91192 1.51712 0.92686 0.92355 1.25024 0.98529 0.95130 0.95660 1.69987 1.35530 1.49737 0.97573 0.86596 0.85404 0.78636 0.76984 1.20159 1.21259 1.20163 0.92788 0.92053 0.92571 0.91110 0.92522 0.92344 0.92794 0.91160 0.92292 0.92004 0.88608 0.88571 0.91198 0.91516 0.88982 0.88998 0.95609 0.95615 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 8.20 37.16 0.30 -0.68 16 2 C -0.06 -0.45 2.99 -90.62 -0.27 -0.72 16 3 C -0.15 -1.17 9.03 37.15 0.34 -0.84 16 4 C -0.11 -1.00 1.91 -154.51 -0.29 -1.29 16 5 C -0.13 -1.13 8.50 37.16 0.32 -0.82 16 6 C -0.17 -1.60 9.47 -26.72 -0.25 -1.85 16 7 C -0.14 -1.60 5.27 -90.61 -0.48 -2.08 16 8 H 0.12 1.29 7.61 -51.93 -0.39 0.90 16 9 C 0.10 1.39 4.83 37.16 0.18 1.57 16 10 O -0.36 -6.29 10.22 -39.26 -0.40 -6.69 16 11 C 0.46 9.29 7.96 36.00 0.29 9.58 16 12 O -0.51 -11.87 15.73 -18.75 -0.29 -12.17 16 13 C -0.10 -2.16 5.75 -27.88 -0.16 -2.32 16 14 C 0.03 0.89 4.26 -27.88 -0.12 0.77 16 15 C -0.53 -14.95 9.11 -34.44 -0.31 -15.26 16 16 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -27.24 13.29 55.43 0.74 -26.50 16 19 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.06 0.41 6.45 -51.93 -0.33 0.07 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.54 7.90 -51.93 -0.41 0.13 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.50 7.28 -51.93 -0.38 0.13 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.53 5.59 -51.93 -0.29 0.24 16 31 H 0.06 0.54 7.90 -51.93 -0.41 0.13 16 32 H 0.06 0.58 7.84 -51.93 -0.41 0.17 16 33 H 0.10 0.92 7.94 -51.93 -0.41 0.50 16 34 H 0.10 0.81 8.05 -51.93 -0.42 0.39 16 35 H 0.07 1.01 7.76 -51.93 -0.40 0.61 16 36 H 0.07 0.96 7.87 -51.93 -0.41 0.55 16 37 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 38 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 39 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 40 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 41 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 336.11 15.07 5.07 5.07 Total: -1.00 -31.72 336.11 -7.67 -39.38 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -7.19 Total: -3.30 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -0.56 Total: -12.35 kcal Atomic # 7 Polarization: -27.24 SS G_CDS: 0.74 Total: -26.50 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.70 Total: -18.86 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.72 -7.67 -39.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813087268.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.369 kcal (2) G-P(sol) polarization free energy of solvation -31.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds