Wall clock time and date at job start Mon Mar 30 2020 06:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.53000 * 115.54590 * 325.71834 * 4 2 1 6 6 C 1.53001 * 117.50076 * 111.39101 * 4 2 1 7 7 C 1.52995 * 117.49917 * 180.02562 * 4 2 1 8 8 H 1.09005 * 117.50056 * 359.97438 * 7 4 2 9 9 C 1.53000 * 117.50310 * 145.01866 * 7 4 2 10 10 O 1.45196 * 109.47358 * 184.99872 * 9 7 4 11 11 C 1.34232 * 116.99911 * 179.97438 * 10 9 7 12 12 O 1.20821 * 119.99951 * 0.02562 * 11 10 9 13 13 C 1.50696 * 120.00115 * 179.97438 * 11 10 9 14 14 C 1.53005 * 109.47398 * 179.97438 * 13 11 10 15 15 C 1.50700 * 109.47164 * 179.97438 * 14 13 11 16 16 H 1.07997 * 120.00186 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99897 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99698 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99856 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47149 * 60.00731 * 19 17 15 21 21 H 1.48505 * 109.46799 * 180.02562 * 19 17 15 22 22 H 1.48491 * 109.47482 * 300.00174 * 19 17 15 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 27 27 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 28 28 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 30 30 H 1.08993 * 109.46947 * 34.41910 * 5 4 2 31 31 H 1.09005 * 109.46765 * 154.42174 * 5 4 2 32 32 H 1.09005 * 109.46997 * 274.41510 * 5 4 2 33 33 H 1.09000 * 117.49788 * 214.98193 * 6 4 2 34 34 H 1.09001 * 117.49697 * 359.97438 * 6 4 2 35 35 H 1.09004 * 109.46675 * 304.99970 * 9 7 4 36 36 H 1.09004 * 109.46946 * 64.99835 * 9 7 4 37 37 H 1.09003 * 109.47317 * 300.00511 * 13 11 10 38 38 H 1.09007 * 109.47177 * 60.00150 * 13 11 10 39 39 H 1.08995 * 109.46824 * 300.00339 * 14 13 11 40 40 H 1.09000 * 109.46393 * 59.99823 * 14 13 11 41 41 H 0.97004 * 119.99595 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.1845 -0.5492 2.5060 6 6 2.7422 -2.0662 1.0513 7 6 3.5550 -0.8277 1.4346 8 1 4.1884 -0.3841 0.6663 9 6 4.0990 -0.7538 2.8627 10 8 5.5505 -0.7531 2.8283 11 6 6.1880 -0.6912 4.0080 12 8 5.5541 -0.6399 5.0352 13 6 7.6943 -0.6870 4.0511 14 6 8.1627 -0.6105 5.5057 15 6 9.6691 -0.6068 5.5489 16 1 10.2358 -0.6539 4.6307 17 6 10.3239 -0.5423 6.7605 18 7 9.6338 -0.4845 7.8786 19 14 12.1911 -0.5371 6.8139 20 1 12.7044 0.6385 6.0659 21 1 12.6456 -0.4630 8.2258 22 1 12.7076 -1.7831 6.1929 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.6768 1.9562 0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 0.1333 -0.4899 2.2246 31 1 1.3360 -1.4017 3.1682 32 1 1.4752 0.3667 3.0207 33 1 2.5950 -2.8283 1.8166 34 1 2.8404 -2.4373 0.0311 35 1 3.7463 0.1611 3.3389 36 1 3.7494 -1.6167 3.4297 37 1 8.0735 -1.6012 3.5945 38 1 8.0711 0.1764 3.5026 39 1 7.7835 0.3040 5.9618 40 1 7.7859 -1.4735 6.0545 41 1 10.0945 -0.4387 8.7310 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813087268.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:44 Heat of formation + Delta-G solvation = -112.052302 kcal Electronic energy + Delta-G solvation = -18530.223772 eV Core-core repulsion = 15602.313191 eV Total energy + Delta-G solvation = -2927.910581 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.55323 -40.15043 -37.57620 -35.65663 -34.59926 -33.15585 -29.84211 -29.04624 -27.73695 -27.52218 -24.14967 -23.38946 -21.89760 -21.49823 -19.28081 -18.92251 -18.20006 -17.69208 -17.13256 -16.52599 -16.34951 -15.73782 -15.36317 -14.83226 -14.44259 -14.26575 -14.16754 -13.92023 -13.73531 -13.39567 -13.35669 -13.19805 -12.79907 -12.57036 -12.48020 -12.24623 -12.13250 -12.00751 -12.00532 -11.85588 -11.76577 -11.48885 -11.39607 -11.30548 -10.70044 -10.57455 -10.54414 -8.20358 -6.34478 1.21698 1.42893 1.47536 1.54894 1.65699 2.42887 2.70678 3.13245 3.48923 3.69432 3.73411 3.96306 4.04256 4.12260 4.22467 4.35055 4.41030 4.43383 4.48556 4.51787 4.60817 4.82294 4.85268 4.87961 4.90969 4.93185 5.02064 5.04287 5.16616 5.16717 5.21365 5.35801 5.40202 5.46642 5.47564 5.54019 5.57503 5.79778 6.12464 6.77748 6.85428 7.35796 8.92204 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.054383 B = 0.003119 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.747292 B = 8974.367022 C = 9110.926358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.057 4.057 3 C -0.148 4.148 4 C -0.097 4.097 5 C -0.131 4.131 6 C -0.161 4.161 7 C -0.159 4.159 8 H 0.118 0.882 9 C 0.095 3.905 10 O -0.355 6.355 11 C 0.464 3.536 12 O -0.546 6.546 13 C -0.094 4.094 14 C 0.039 3.961 15 C -0.546 4.546 16 H 0.078 0.922 17 C -0.005 4.005 18 N -0.936 5.936 19 Si 0.975 3.025 20 H -0.262 1.262 21 H -0.287 1.287 22 H -0.262 1.262 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.077 0.923 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.116 0.884 38 H 0.116 0.884 39 H -0.011 1.011 40 H -0.011 1.011 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.959 0.000 -18.837 25.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.075 4.075 3 C -0.205 4.205 4 C -0.097 4.097 5 C -0.187 4.187 6 C -0.198 4.198 7 C -0.177 4.177 8 H 0.136 0.864 9 C 0.021 3.979 10 O -0.272 6.272 11 C 0.309 3.691 12 O -0.436 6.436 13 C -0.131 4.131 14 C 0.001 3.999 15 C -0.583 4.583 16 H 0.096 0.904 17 C -0.202 4.202 18 N -0.576 5.576 19 Si 0.799 3.201 20 H -0.187 1.187 21 H -0.213 1.213 22 H -0.187 1.187 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.096 0.904 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.112 0.888 34 H 0.131 0.869 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.008 0.992 40 H 0.008 0.992 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.182 0.025 -18.370 25.153 hybrid contribution 0.731 0.023 0.912 1.169 sum -16.451 0.048 -17.457 23.988 Atomic orbital electron populations 1.21894 0.93865 1.02215 1.02276 1.20689 0.96553 0.95574 0.94696 1.21838 1.00868 0.95800 1.01980 1.21753 0.90650 0.99424 0.97896 1.21566 1.00740 1.01494 0.94937 1.23464 1.02095 0.90612 1.03614 1.22198 0.94824 1.05494 0.95155 0.86386 1.22606 0.75960 1.01747 0.97566 1.86507 1.23254 1.83751 1.33717 1.24546 0.92911 0.70766 0.80837 1.90620 1.69572 1.47012 1.36383 1.21523 0.84349 1.06240 1.01014 1.18793 0.95501 0.95400 0.90162 1.21619 0.91964 1.51165 0.93596 0.90401 1.26119 1.04500 0.94459 0.95167 1.70158 1.38045 1.50998 0.98392 0.85348 0.78172 0.79504 0.77087 1.18684 1.21280 1.18695 0.91807 0.92084 0.92175 0.90433 0.93084 0.93273 0.91584 0.89442 0.92906 0.92802 0.88762 0.86921 0.91792 0.91933 0.86589 0.86594 0.99222 0.99230 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.20 71.98 0.59 -1.00 16 2 C -0.06 -0.77 2.99 -10.79 -0.03 -0.80 16 3 C -0.15 -2.12 9.03 71.98 0.65 -1.47 16 4 C -0.10 -1.63 1.91 -52.18 -0.10 -1.73 16 5 C -0.13 -2.20 8.50 71.98 0.61 -1.59 16 6 C -0.16 -2.77 9.47 30.60 0.29 -2.49 16 7 C -0.16 -3.36 5.27 -10.79 -0.06 -3.42 16 8 H 0.12 2.47 7.61 -2.38 -0.02 2.46 16 9 C 0.09 2.70 4.83 71.98 0.35 3.04 16 10 O -0.36 -12.06 10.22 -51.44 -0.53 -12.58 16 11 C 0.46 19.05 7.96 71.23 0.57 19.62 16 12 O -0.55 -26.46 15.73 21.98 0.35 -26.11 16 13 C -0.09 -3.89 5.75 29.85 0.17 -3.72 16 14 C 0.04 2.13 4.26 29.85 0.13 2.26 16 15 C -0.55 -30.82 9.11 25.60 0.23 -30.58 16 16 H 0.08 4.00 7.74 -2.91 -0.02 3.97 16 17 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 18 N -0.94 -58.74 13.29 21.45 0.28 -58.46 16 19 Si 0.98 43.95 29.54 68.60 2.03 45.98 16 20 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 21 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 22 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 23 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 24 H 0.06 0.67 6.45 -2.39 -0.02 0.66 16 25 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 26 H 0.08 0.97 7.90 -2.39 -0.02 0.96 16 27 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.05 0.79 7.28 -2.39 -0.02 0.77 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.09 1.16 5.59 -2.39 -0.01 1.15 16 31 H 0.05 0.95 7.90 -2.38 -0.02 0.93 16 32 H 0.05 0.99 7.84 -2.38 -0.02 0.97 16 33 H 0.09 1.67 7.94 -2.39 -0.02 1.65 16 34 H 0.11 1.59 8.05 -2.39 -0.02 1.57 16 35 H 0.06 1.89 7.76 -2.38 -0.02 1.87 16 36 H 0.06 1.83 7.87 -2.39 -0.02 1.81 16 37 H 0.12 4.26 8.14 -2.39 -0.02 4.24 16 38 H 0.12 4.26 8.14 -2.38 -0.02 4.24 16 39 H -0.01 -0.66 8.10 -2.39 -0.02 -0.67 16 40 H -0.01 -0.66 8.10 -2.39 -0.02 -0.68 16 41 H 0.26 15.54 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -69.52 336.11 6.97 -62.56 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 0.98 Total: 10.29 kcal Atomic # 6 Polarization: -25.54 SS G_CDS: 3.86 Total: -21.68 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: 0.28 Total: -58.46 kcal Atomic # 8 Polarization: -38.51 SS G_CDS: -0.18 Total: -38.69 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -69.52 6.97 -62.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813087268.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.497 kcal (2) G-P(sol) polarization free energy of solvation -69.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds