Wall clock time and date at job start Mon Mar 30 2020 06:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47253 * 2 1 4 4 C 1.52997 * 115.54760 * 65.21808 * 3 2 1 5 5 O 1.45198 * 109.47275 * 39.67122 * 4 3 2 6 6 C 1.34233 * 117.00214 * 179.97438 * 5 4 3 7 7 O 1.20827 * 119.99583 * 359.97438 * 6 5 4 8 8 C 1.50694 * 120.00026 * 179.97438 * 6 5 4 9 9 C 1.53008 * 109.46860 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.46693 * 180.02562 * 9 8 6 11 11 C 1.53007 * 109.47063 * 179.97438 * 10 9 8 12 12 C 1.50694 * 109.47230 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00047 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99750 * 179.97438 * 12 11 10 15 15 N 1.31518 * 120.00050 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99898 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47370 * 60.00364 * 16 14 12 18 18 H 1.48498 * 109.47247 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46992 * 299.99907 * 16 14 12 20 20 C 1.53005 * 117.51828 * 210.91772 * 3 2 1 21 21 C 1.52998 * 117.49937 * 279.54764 * 3 2 1 22 22 H 1.09005 * 109.47123 * 174.73237 * 1 2 3 23 23 H 1.09003 * 109.46941 * 294.73607 * 1 2 3 24 24 H 1.09001 * 109.47015 * 54.73789 * 1 2 3 25 25 H 1.09002 * 109.47228 * 239.99968 * 2 1 3 26 26 H 1.08996 * 109.47448 * 120.00194 * 2 1 3 27 27 H 1.08999 * 109.46905 * 159.67260 * 4 3 2 28 28 H 1.08997 * 109.47373 * 279.66821 * 4 3 2 29 29 H 1.09000 * 109.47659 * 299.99863 * 8 6 5 30 30 H 1.09000 * 109.46937 * 60.00352 * 8 6 5 31 31 H 1.08995 * 109.46803 * 299.99805 * 9 8 6 32 32 H 1.09000 * 109.47135 * 60.00379 * 9 8 6 33 33 H 1.09000 * 109.47601 * 299.99631 * 10 9 8 34 34 H 1.09000 * 109.47162 * 60.00223 * 10 9 8 35 35 H 1.09000 * 109.46629 * 300.00249 * 11 10 9 36 36 H 1.09006 * 109.46907 * 59.99642 * 11 10 9 37 37 H 0.97001 * 119.99475 * 179.97438 * 15 14 12 38 38 H 1.08997 * 117.49382 * 214.97268 * 20 3 2 39 39 H 1.08999 * 117.50054 * 359.97438 * 20 3 2 40 40 H 1.09004 * 117.49727 * 359.97438 * 21 3 2 41 41 H 1.08997 * 117.50070 * 144.99730 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.7144 2.2575 1.2533 5 8 1.8630 1.4180 2.4286 6 6 1.6126 1.9860 3.6188 7 8 1.2808 3.1464 3.6765 8 6 1.7454 1.1764 4.8829 9 6 1.4057 2.0546 6.0889 10 6 1.5412 1.2328 7.3724 11 6 1.2021 2.1111 8.5785 12 6 1.3349 1.3015 9.8426 13 1 1.6319 0.2645 9.7909 14 6 1.0782 1.8852 11.0651 15 7 0.7171 3.1482 11.1279 16 14 1.2435 0.8819 12.6321 17 1 2.6374 0.3853 12.7573 18 1 0.9143 1.7342 13.8027 19 1 0.3096 -0.2717 12.5821 20 6 3.3732 1.7209 -0.6972 21 6 2.0633 2.1836 -1.3383 22 1 -0.3634 -1.0234 -0.0944 23 1 -0.3633 0.4300 0.9334 24 1 -0.3633 0.5933 -0.8391 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 2.3968 3.1046 1.3232 28 1 0.6887 2.6212 1.1939 29 1 1.0600 0.3298 4.8459 30 1 2.7686 0.8120 4.9751 31 1 2.0909 2.9015 6.1262 32 1 0.3825 2.4187 5.9965 33 1 0.8563 0.3857 7.3354 34 1 2.5645 0.8690 7.4646 35 1 1.8873 2.9580 8.6152 36 1 0.1788 2.4753 8.4865 37 1 0.5362 3.5586 11.9880 38 1 4.0183 2.4847 -0.2630 39 1 3.8874 0.8763 -1.1557 40 1 1.7156 1.6433 -2.2189 41 1 1.8467 3.2517 -1.3260 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816185360.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:08 Heat of formation + Delta-G solvation = -101.975616 kcal Electronic energy + Delta-G solvation = -18238.374155 eV Core-core repulsion = 15310.900532 eV Total energy + Delta-G solvation = -2927.473623 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 254.167 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.51353 -38.69231 -36.30410 -34.95235 -32.67344 -32.13775 -30.06328 -27.96152 -25.64144 -24.12613 -22.82425 -22.58713 -20.50107 -20.00895 -19.32928 -17.44522 -16.73897 -16.47641 -16.15469 -15.34050 -15.08253 -14.57531 -14.42532 -14.04261 -13.47500 -13.15793 -12.87193 -12.63913 -12.37625 -12.25294 -11.86625 -11.75129 -11.66038 -11.50766 -11.02645 -10.98835 -10.91634 -10.61315 -10.57309 -10.56332 -10.45027 -10.28859 -9.98676 -9.63855 -9.27598 -9.02404 -8.30797 -5.95767 -3.98427 2.32685 2.59515 3.35553 3.39878 3.40977 3.42286 4.25034 4.36939 4.48776 4.51912 4.56316 4.93381 5.06291 5.12344 5.18347 5.25575 5.27155 5.29764 5.31872 5.39652 5.43103 5.52327 5.72189 5.74184 5.74391 5.82245 5.95662 6.07109 6.07751 6.21204 6.44026 6.50374 6.77892 6.96049 7.17123 7.72618 7.86094 7.87868 8.05114 8.46794 9.09004 9.65311 11.15571 Molecular weight = 254.17amu Principal moments of inertia in cm(-1) A = 0.051739 B = 0.002834 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.047825 B = 9877.947838 C =10070.826528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.082 4.082 3 C -0.127 4.127 4 C 0.105 3.895 5 O -0.355 6.355 6 C 0.459 3.541 7 O -0.507 6.507 8 C -0.111 4.111 9 C -0.108 4.108 10 C -0.110 4.110 11 C 0.020 3.980 12 C -0.521 4.521 13 H 0.054 0.946 14 C 0.055 3.945 15 N -0.896 5.896 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.171 4.171 21 C -0.165 4.165 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.016 0.984 36 H 0.016 0.984 37 H 0.261 0.739 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.747 -5.230 -25.205 25.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.119 4.119 3 C -0.127 4.127 4 C 0.031 3.969 5 O -0.272 6.272 6 C 0.302 3.698 7 O -0.395 6.395 8 C -0.149 4.149 9 C -0.146 4.146 10 C -0.148 4.148 11 C -0.017 4.017 12 C -0.560 4.560 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.535 5.535 16 Si 0.720 3.280 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.208 4.208 21 C -0.202 4.202 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.593 -4.723 -25.094 25.666 hybrid contribution 0.054 -0.241 0.821 0.858 sum 2.647 -4.964 -24.273 24.916 Atomic orbital electron populations 1.21719 0.95441 1.01567 1.01941 1.20973 0.95956 0.92516 1.02452 1.21440 1.02081 0.97349 0.91857 1.22379 1.01907 0.91575 0.81040 1.86507 1.80848 1.44691 1.15169 1.24219 0.73005 0.87308 0.85250 1.90671 1.43002 1.18338 1.87452 1.21601 1.05173 0.99494 0.88614 1.21576 1.02563 0.98119 0.92347 1.21650 1.00414 0.98668 0.94019 1.19093 0.96951 0.94772 0.90867 1.21240 1.46040 0.97251 0.91446 0.92739 1.25041 0.95376 0.94939 0.99191 1.69966 1.46871 1.11473 1.25203 0.86661 0.78537 0.80032 0.82768 1.20260 1.21323 1.20264 1.23168 0.90555 1.03548 1.03536 1.23044 1.01369 1.00667 0.95152 0.92597 0.92580 0.92891 0.91985 0.90408 0.91266 0.90906 0.87919 0.87912 0.91581 0.91567 0.93204 0.93211 0.96561 0.96560 0.92968 0.88564 0.88378 0.88151 0.88557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.72 37.16 0.36 -0.83 16 2 C -0.08 -0.66 5.49 -26.73 -0.15 -0.81 16 3 C -0.13 -1.09 1.96 -154.51 -0.30 -1.39 16 4 C 0.10 1.14 5.04 37.16 0.19 1.32 16 5 O -0.35 -4.46 9.25 -39.27 -0.36 -4.82 16 6 C 0.46 6.67 7.96 36.00 0.29 6.96 16 7 O -0.51 -8.97 15.73 -18.75 -0.29 -9.26 16 8 C -0.11 -1.51 5.81 -27.88 -0.16 -1.67 16 9 C -0.11 -1.90 4.51 -26.73 -0.12 -2.02 16 10 C -0.11 -2.23 5.15 -26.73 -0.14 -2.37 16 11 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 12 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 13 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.50 13.29 55.43 0.74 -26.76 16 16 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C -0.17 -1.26 9.87 -26.73 -0.26 -1.52 16 21 C -0.17 -1.13 9.97 -26.73 -0.27 -1.40 16 22 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 23 H 0.06 0.52 7.88 -51.93 -0.41 0.11 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 26 H 0.08 0.71 7.57 -51.93 -0.39 0.32 16 27 H 0.07 0.76 7.94 -51.93 -0.41 0.35 16 28 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 29 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 32 H 0.07 1.22 8.10 -51.93 -0.42 0.80 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 38 H 0.10 0.71 8.08 -51.93 -0.42 0.29 16 39 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 343.65 15.07 5.18 5.18 Total: -1.00 -32.01 343.65 -8.39 -40.40 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -7.51 Total: -4.50 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: -1.11 Total: -17.10 kcal Atomic # 7 Polarization: -27.50 SS G_CDS: 0.74 Total: -26.76 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.66 Total: -14.08 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.01 -8.39 -40.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816185360.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.574 kcal (2) G-P(sol) polarization free energy of solvation -32.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds