Wall clock time and date at job start Mon Mar 30 2020 06:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47028 * 2 1 4 4 H 1.09003 * 109.47011 * 307.16554 * 3 2 1 5 5 C 1.50690 * 109.47144 * 67.17105 * 3 2 1 6 6 H 1.08001 * 120.00471 * 114.26986 * 5 3 2 7 7 C 1.37877 * 119.99984 * 294.27172 * 5 3 2 8 8 N 1.31509 * 120.00135 * 340.88680 * 7 5 3 9 9 Si 1.86807 * 119.99865 * 160.88569 * 7 5 3 10 10 H 1.48488 * 109.47271 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.46832 * 120.00227 * 9 7 5 12 12 H 1.48504 * 109.47093 * 239.99830 * 9 7 5 13 13 C 1.52999 * 109.46821 * 187.17068 * 3 2 1 14 14 C 1.50700 * 109.62704 * 60.00207 * 13 3 2 15 15 O 1.20826 * 119.99840 * 359.97438 * 14 13 3 16 16 O 1.34233 * 120.00101 * 180.02562 * 14 13 3 17 17 C 1.53231 * 109.62385 * 180.38231 * 13 3 2 18 18 C 1.53009 * 109.37849 * 174.14838 * 17 13 3 19 19 C 1.52952 * 109.98545 * 296.68629 * 18 17 13 20 20 C 1.53225 * 109.40647 * 63.51503 * 19 18 17 21 21 C 1.51270 * 108.54167 * 305.37647 * 20 19 18 22 22 O 1.20756 * 120.85412 * 231.37303 * 21 20 19 23 23 H 1.09003 * 109.47451 * 175.34873 * 1 2 3 24 24 H 1.08997 * 109.47124 * 55.34554 * 1 2 3 25 25 H 1.09002 * 109.47328 * 295.34738 * 1 2 3 26 26 H 1.08999 * 109.47258 * 120.00262 * 2 1 3 27 27 H 1.08997 * 109.46877 * 240.00109 * 2 1 3 28 28 H 0.97000 * 120.00416 * 180.02562 * 8 7 5 29 29 H 0.96697 * 116.99441 * 179.97438 * 16 14 13 30 30 H 1.08998 * 109.48062 * 294.31840 * 17 13 3 31 31 H 1.08997 * 109.48588 * 54.35969 * 17 13 3 32 32 H 1.09001 * 109.39604 * 176.48350 * 18 17 13 33 33 H 1.09009 * 109.20535 * 56.76655 * 18 17 13 34 34 H 1.09002 * 109.48278 * 303.54128 * 19 18 17 35 35 H 1.09000 * 109.49632 * 183.50373 * 19 18 17 36 36 H 1.09001 * 109.63105 * 185.66088 * 20 19 18 37 37 H 1.09004 * 109.78610 * 65.18299 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5758 1.9920 -0.8190 5 6 1.6877 2.0999 1.3094 6 1 2.4700 2.3987 1.9914 7 6 0.3666 2.3198 1.6369 8 7 -0.5532 2.3165 0.6971 9 14 -0.1167 2.6226 3.4158 10 1 1.0949 2.5753 4.2729 11 1 -0.7560 3.9577 3.5346 12 1 -1.0736 1.5749 3.8540 13 6 3.5593 1.4462 -0.1801 14 6 3.9156 0.7896 -1.4888 15 8 3.0434 0.3606 -2.2066 16 8 5.2019 0.6803 -1.8567 17 6 4.0751 2.8891 -0.1710 18 6 5.6048 2.8817 -0.2045 19 6 6.1521 2.2156 1.0589 20 6 5.7139 0.7477 1.0912 21 6 4.2079 0.6923 0.9598 22 8 3.5405 0.0628 1.7450 23 1 -0.3634 -1.0243 -0.0833 24 1 -0.3633 0.5843 -0.8453 25 1 -0.3634 0.4399 0.9287 26 1 1.8934 -0.5139 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 -1.4826 2.4716 0.9274 29 1 5.3810 0.2511 -2.7046 30 1 3.6919 3.4176 -1.0439 31 1 3.7364 3.3907 0.7355 32 1 5.9706 3.9069 -0.2611 33 1 5.9416 2.3279 -1.0810 34 1 5.7644 2.7301 1.9382 35 1 7.2408 2.2700 1.0564 36 1 6.0157 0.2962 2.0363 37 1 6.1737 0.2071 0.2639 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821973433.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:42 Heat of formation + Delta-G solvation = -121.099196 kcal Electronic energy + Delta-G solvation = -20906.658796 eV Core-core repulsion = 17842.522818 eV Total energy + Delta-G solvation = -3064.135978 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.135 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.84204 -38.70852 -36.14102 -35.85900 -34.65619 -31.79629 -30.17435 -28.70804 -26.48655 -24.06490 -22.82714 -21.46004 -21.13318 -19.48174 -18.69109 -17.64768 -16.57292 -15.50687 -15.43335 -15.24717 -14.57909 -13.94814 -13.87486 -13.77967 -13.29846 -12.97430 -12.58163 -12.34807 -12.15425 -11.96662 -11.59991 -11.07088 -11.03338 -10.86615 -10.75571 -10.64594 -10.53913 -10.30764 -10.22215 -9.96555 -9.67697 -9.50220 -9.07733 -8.84748 -8.31076 -7.65679 -6.00211 -3.87692 2.38684 2.75970 3.33521 3.43233 3.47374 3.58224 4.49480 4.57210 5.06753 5.14035 5.20680 5.31438 5.43375 5.54297 5.76519 5.80943 6.01316 6.04801 6.17698 6.27531 6.36840 6.51213 6.59323 6.73481 6.88424 6.91203 6.95636 7.24344 7.46094 7.61765 7.71097 7.92230 7.98860 8.21587 8.27818 8.35734 8.46392 9.00713 9.62348 11.05206 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.023375 B = 0.010041 C = 0.008461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.590608 B = 2787.927974 C = 3308.441245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.126 4.126 3 C 0.075 3.925 4 H 0.047 0.953 5 C -0.503 4.503 6 H 0.054 0.946 7 C 0.069 3.931 8 N -0.865 5.865 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.283 1.283 13 C -0.084 4.084 14 C 0.486 3.514 15 O -0.491 6.491 16 O -0.517 6.517 17 C -0.095 4.095 18 C -0.139 4.139 19 C -0.107 4.107 20 C -0.169 4.169 21 C 0.370 3.630 22 O -0.407 6.407 23 H -0.010 1.010 24 H 0.049 0.951 25 H 0.085 0.915 26 H 0.059 0.941 27 H 0.032 0.968 28 H 0.259 0.741 29 H 0.395 0.605 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.209 -0.196 -2.921 13.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.163 4.163 3 C 0.056 3.944 4 H 0.065 0.935 5 C -0.541 4.541 6 H 0.072 0.928 7 C -0.133 4.133 8 N -0.503 5.503 9 Si 0.704 3.296 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.209 1.209 13 C -0.086 4.086 14 C 0.328 3.672 15 O -0.377 6.377 16 O -0.330 6.330 17 C -0.133 4.133 18 C -0.176 4.176 19 C -0.144 4.144 20 C -0.207 4.207 21 C 0.241 3.759 22 O -0.275 6.275 23 H 0.009 0.991 24 H 0.068 0.932 25 H 0.103 0.897 26 H 0.077 0.923 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.253 0.747 30 H 0.089 0.911 31 H 0.114 0.886 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.300 -0.446 -2.333 12.527 hybrid contribution -0.264 -0.143 0.284 0.413 sum 12.036 -0.589 -2.050 12.223 Atomic orbital electron populations 1.22073 0.95660 0.95146 1.05062 1.22089 0.97106 0.97962 0.99167 1.18686 0.82450 0.94613 0.98626 0.93475 1.20821 0.91940 1.39420 1.01921 0.92764 1.24727 0.96665 0.95348 0.96537 1.70271 1.01544 1.47200 1.31326 0.86806 0.78686 0.77431 0.86692 1.19768 1.21405 1.20875 1.21711 1.03075 0.96049 0.87739 1.23545 0.79394 0.75985 0.88320 1.90677 1.49163 1.44356 1.53512 1.84685 1.30161 1.74902 1.43213 1.21555 0.94003 0.92881 1.04826 1.21906 0.95961 1.00727 0.98976 1.21417 1.00259 0.93833 0.98907 1.22352 0.95311 0.99137 1.03879 1.24292 0.90264 0.77274 0.84066 1.90368 1.66292 1.31902 1.38945 0.99107 0.93237 0.89686 0.92300 0.94988 0.93055 0.74664 0.91147 0.88605 0.91818 0.89644 0.91688 0.91528 0.90099 0.88357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.22 8.21 37.16 0.31 -2.92 16 2 C -0.13 -3.22 4.72 -26.73 -0.13 -3.35 16 3 C 0.07 1.86 0.92 -91.78 -0.08 1.77 16 4 H 0.05 1.31 7.97 -51.93 -0.41 0.90 16 5 C -0.50 -13.36 6.24 -34.45 -0.22 -13.57 16 6 H 0.05 1.43 6.50 -52.49 -0.34 1.09 16 7 C 0.07 1.87 3.77 -17.82 -0.07 1.81 16 8 N -0.87 -24.24 9.55 55.43 0.53 -23.71 16 9 Si 0.88 21.40 29.58 -169.99 -5.03 16.37 16 10 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 C -0.08 -1.66 0.30 -156.41 -0.05 -1.71 16 14 C 0.49 8.81 6.59 36.01 0.24 9.05 16 15 O -0.49 -10.53 14.47 -18.75 -0.27 -10.80 16 16 O -0.52 -6.55 8.90 -39.27 -0.35 -6.90 16 17 C -0.10 -1.63 4.55 -26.61 -0.12 -1.75 16 18 C -0.14 -1.80 5.59 -26.75 -0.15 -1.95 16 19 C -0.11 -1.33 5.94 -26.64 -0.16 -1.48 16 20 C -0.17 -2.40 5.73 -27.49 -0.16 -2.56 16 21 C 0.37 7.15 5.05 -28.47 -0.14 7.00 16 22 O -0.41 -9.36 13.43 6.00 0.08 -9.28 16 23 H -0.01 -0.25 8.14 -51.93 -0.42 -0.67 16 24 H 0.05 1.35 7.56 -51.93 -0.39 0.96 16 25 H 0.08 2.39 4.66 -51.93 -0.24 2.14 16 26 H 0.06 1.56 5.52 -51.93 -0.29 1.27 16 27 H 0.03 0.80 5.40 -51.93 -0.28 0.52 16 28 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.40 3.22 9.10 45.56 0.41 3.64 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.10 1.78 6.57 -51.93 -0.34 1.44 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.09 1.05 5.27 -51.92 -0.27 0.78 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.10 1.23 6.95 -51.93 -0.36 0.87 16 LS Contribution 277.51 15.07 4.18 4.18 Total: -1.00 -31.43 277.51 -5.77 -37.20 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -4.19 Total: 2.58 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -0.73 Total: -9.66 kcal Atomic # 7 Polarization: -24.24 SS G_CDS: 0.53 Total: -23.71 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.54 Total: -26.98 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.43 -5.77 -37.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821973433.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.898 kcal (2) G-P(sol) polarization free energy of solvation -31.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds