Wall clock time and date at job start Mon Mar 30 2020 06:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47028 * 2 1 4 4 H 1.09003 * 109.47011 * 307.16554 * 3 2 1 5 5 C 1.50690 * 109.47144 * 67.17105 * 3 2 1 6 6 H 1.08001 * 120.00471 * 114.26986 * 5 3 2 7 7 C 1.37877 * 119.99984 * 294.27172 * 5 3 2 8 8 N 1.31509 * 120.00135 * 340.88680 * 7 5 3 9 9 Si 1.86807 * 119.99865 * 160.88569 * 7 5 3 10 10 H 1.48488 * 109.47271 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.46832 * 120.00227 * 9 7 5 12 12 H 1.48504 * 109.47093 * 239.99830 * 9 7 5 13 13 C 1.52999 * 109.46821 * 187.17068 * 3 2 1 14 14 C 1.50700 * 109.62704 * 60.00207 * 13 3 2 15 15 O 1.20826 * 119.99840 * 359.97438 * 14 13 3 16 16 O 1.34233 * 120.00101 * 180.02562 * 14 13 3 17 17 C 1.53231 * 109.62385 * 180.38231 * 13 3 2 18 18 C 1.53009 * 109.37849 * 174.14838 * 17 13 3 19 19 C 1.52952 * 109.98545 * 296.68629 * 18 17 13 20 20 C 1.53225 * 109.40647 * 63.51503 * 19 18 17 21 21 C 1.51270 * 108.54167 * 305.37647 * 20 19 18 22 22 O 1.20756 * 120.85412 * 231.37303 * 21 20 19 23 23 H 1.09003 * 109.47451 * 175.34873 * 1 2 3 24 24 H 1.08997 * 109.47124 * 55.34554 * 1 2 3 25 25 H 1.09002 * 109.47328 * 295.34738 * 1 2 3 26 26 H 1.08999 * 109.47258 * 120.00262 * 2 1 3 27 27 H 1.08997 * 109.46877 * 240.00109 * 2 1 3 28 28 H 0.97000 * 120.00416 * 180.02562 * 8 7 5 29 29 H 0.96697 * 116.99441 * 179.97438 * 16 14 13 30 30 H 1.08998 * 109.48062 * 294.31840 * 17 13 3 31 31 H 1.08997 * 109.48588 * 54.35969 * 17 13 3 32 32 H 1.09001 * 109.39604 * 176.48350 * 18 17 13 33 33 H 1.09009 * 109.20535 * 56.76655 * 18 17 13 34 34 H 1.09002 * 109.48278 * 303.54128 * 19 18 17 35 35 H 1.09000 * 109.49632 * 183.50373 * 19 18 17 36 36 H 1.09001 * 109.63105 * 185.66088 * 20 19 18 37 37 H 1.09004 * 109.78610 * 65.18299 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5758 1.9920 -0.8190 5 6 1.6877 2.0999 1.3094 6 1 2.4700 2.3987 1.9914 7 6 0.3666 2.3198 1.6369 8 7 -0.5532 2.3165 0.6971 9 14 -0.1167 2.6226 3.4158 10 1 1.0949 2.5753 4.2729 11 1 -0.7560 3.9577 3.5346 12 1 -1.0736 1.5749 3.8540 13 6 3.5593 1.4462 -0.1801 14 6 3.9156 0.7896 -1.4888 15 8 3.0434 0.3606 -2.2066 16 8 5.2019 0.6803 -1.8567 17 6 4.0751 2.8891 -0.1710 18 6 5.6048 2.8817 -0.2045 19 6 6.1521 2.2156 1.0589 20 6 5.7139 0.7477 1.0912 21 6 4.2079 0.6923 0.9598 22 8 3.5405 0.0628 1.7450 23 1 -0.3634 -1.0243 -0.0833 24 1 -0.3633 0.5843 -0.8453 25 1 -0.3634 0.4399 0.9287 26 1 1.8934 -0.5139 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 -1.4826 2.4716 0.9274 29 1 5.3810 0.2511 -2.7046 30 1 3.6919 3.4176 -1.0439 31 1 3.7364 3.3907 0.7355 32 1 5.9706 3.9069 -0.2611 33 1 5.9416 2.3279 -1.0810 34 1 5.7644 2.7301 1.9382 35 1 7.2408 2.2700 1.0564 36 1 6.0157 0.2962 2.0363 37 1 6.1737 0.2071 0.2639 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821973433.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:42 Heat of formation + Delta-G solvation = -141.615415 kcal Electronic energy + Delta-G solvation = -20907.548446 eV Core-core repulsion = 17842.522818 eV Total energy + Delta-G solvation = -3065.025628 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.135 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.31714 -40.17641 -37.55803 -37.34319 -36.32182 -33.55018 -31.98193 -30.06718 -28.41775 -25.63598 -24.50441 -22.86471 -22.64827 -21.22702 -20.15890 -19.01643 -18.30082 -17.21881 -16.86478 -16.73026 -16.43797 -15.46953 -15.29706 -15.15507 -14.79032 -14.68932 -14.13531 -13.93236 -13.87008 -13.46229 -13.25563 -12.79416 -12.71385 -12.60628 -12.37061 -12.23667 -12.18456 -11.95562 -11.78530 -11.52522 -11.32938 -11.23623 -10.89678 -10.77345 -10.01442 -9.70602 -8.10437 -6.01641 0.92858 1.31227 1.36059 1.42174 1.51164 2.21615 2.47734 3.14242 3.22572 3.77634 3.89531 4.06871 4.20780 4.29714 4.55850 4.57495 4.69523 4.77711 4.82567 4.94245 5.05027 5.15621 5.18369 5.27200 5.30352 5.36851 5.38632 5.50709 5.57672 5.63103 5.73532 5.87026 5.94270 6.08679 6.34615 6.73387 6.91453 7.09934 7.49944 8.95473 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.023375 B = 0.010041 C = 0.008461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.590608 B = 2787.927974 C = 3308.441245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.121 4.121 3 C 0.078 3.922 4 H 0.005 0.995 5 C -0.504 4.504 6 H 0.051 0.949 7 C 0.025 3.975 8 N -0.891 5.891 9 Si 0.929 3.071 10 H -0.272 1.272 11 H -0.280 1.280 12 H -0.286 1.286 13 C -0.098 4.098 14 C 0.499 3.501 15 O -0.532 6.532 16 O -0.489 6.489 17 C -0.093 4.093 18 C -0.129 4.129 19 C -0.104 4.104 20 C -0.159 4.159 21 C 0.367 3.633 22 O -0.455 6.455 23 H 0.005 0.995 24 H 0.030 0.970 25 H 0.068 0.932 26 H 0.051 0.949 27 H 0.034 0.966 28 H 0.259 0.741 29 H 0.423 0.577 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.055 0.945 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.354 -0.028 -2.821 16.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.158 4.158 3 C 0.059 3.941 4 H 0.023 0.977 5 C -0.542 4.542 6 H 0.069 0.931 7 C -0.174 4.174 8 N -0.530 5.530 9 Si 0.756 3.244 10 H -0.197 1.197 11 H -0.206 1.206 12 H -0.212 1.212 13 C -0.100 4.100 14 C 0.342 3.658 15 O -0.422 6.422 16 O -0.303 6.303 17 C -0.131 4.131 18 C -0.166 4.166 19 C -0.142 4.142 20 C -0.196 4.196 21 C 0.242 3.758 22 O -0.327 6.327 23 H 0.024 0.976 24 H 0.049 0.951 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.285 0.715 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.117 0.883 34 H 0.073 0.927 35 H 0.126 0.874 36 H 0.111 0.889 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 15.498 -0.264 -2.251 15.663 hybrid contribution -1.202 -0.193 0.185 1.231 sum 14.297 -0.457 -2.066 14.452 Atomic orbital electron populations 1.21937 0.96488 0.95442 1.03266 1.22026 0.96348 0.98687 0.98767 1.18420 0.86353 0.93090 0.96210 0.97656 1.21016 0.91845 1.38845 1.02513 0.93092 1.25361 0.96933 0.95700 0.99450 1.70373 1.01645 1.48339 1.32674 0.85973 0.78163 0.77399 0.82904 1.19659 1.20559 1.21201 1.21584 0.99979 0.98551 0.89851 1.22997 0.80551 0.74996 0.87207 1.90671 1.50780 1.46210 1.54520 1.84553 1.26348 1.74457 1.44948 1.21548 0.97567 0.90563 1.03384 1.21881 0.92012 1.02744 0.99930 1.21487 1.02658 0.91952 0.98060 1.22381 0.90544 1.01080 1.05587 1.24989 0.92844 0.75454 0.82538 1.90348 1.67946 1.34036 1.40417 0.97606 0.95121 0.91339 0.93065 0.94709 0.93148 0.71459 0.91879 0.90831 0.89322 0.88279 0.92661 0.87378 0.88928 0.85787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -6.23 8.21 71.98 0.59 -5.64 16 2 C -0.12 -6.39 4.72 30.60 0.14 -6.24 16 3 C 0.08 4.00 0.92 -11.54 -0.01 3.99 16 4 H 0.01 0.31 7.97 -2.39 -0.02 0.29 16 5 C -0.50 -27.54 6.24 25.60 0.16 -27.38 16 6 H 0.05 2.76 6.50 -2.91 -0.02 2.74 16 7 C 0.02 1.38 3.77 84.66 0.32 1.70 16 8 N -0.89 -51.73 9.55 21.45 0.20 -51.52 16 9 Si 0.93 44.80 29.58 68.60 2.03 46.83 16 10 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 13 C -0.10 -3.85 0.30 -53.41 -0.02 -3.86 16 14 C 0.50 17.43 6.59 71.24 0.47 17.90 16 15 O -0.53 -22.79 14.47 21.96 0.32 -22.47 16 16 O -0.49 -10.44 8.90 -51.45 -0.46 -10.90 16 17 C -0.09 -3.09 4.55 30.67 0.14 -2.95 16 18 C -0.13 -2.83 5.59 30.58 0.17 -2.66 16 19 C -0.10 -2.12 5.94 30.65 0.18 -1.94 16 20 C -0.16 -3.90 5.73 30.10 0.17 -3.73 16 21 C 0.37 13.77 5.05 29.47 0.15 13.92 16 22 O -0.46 -21.05 13.43 -1.44 -0.02 -21.07 16 23 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 24 H 0.03 1.73 7.56 -2.39 -0.02 1.71 16 25 H 0.07 3.98 4.66 -2.39 -0.01 3.97 16 26 H 0.05 2.79 5.52 -2.39 -0.01 2.77 16 27 H 0.03 1.80 5.40 -2.39 -0.01 1.78 16 28 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 29 H 0.42 4.96 9.10 -74.06 -0.67 4.28 16 30 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.07 2.75 6.57 -2.39 -0.02 2.73 16 32 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.10 1.93 5.27 -2.38 -0.01 1.91 16 34 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.12 2.45 6.95 -2.39 -0.02 2.44 16 Total: -1.00 -71.79 277.51 4.97 -66.83 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 0.42 Total: 9.20 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: 2.47 Total: -16.89 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: 0.20 Total: -51.52 kcal Atomic # 8 Polarization: -54.28 SS G_CDS: -0.16 Total: -54.44 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -71.79 4.97 -66.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821973433.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.789 kcal (2) G-P(sol) polarization free energy of solvation -71.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds