Wall clock time and date at job start Mon Mar 30 2020 06:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34229 * 117.00013 * 2 1 4 4 O 1.20826 * 120.00142 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00158 * 180.02562 * 3 2 1 6 6 C 1.52991 * 109.70921 * 205.95211 * 5 3 2 7 7 H 1.08995 * 109.47783 * 174.72085 * 6 5 3 8 8 C 1.53001 * 109.47309 * 294.72366 * 6 5 3 9 9 C 1.52999 * 109.46954 * 54.72163 * 6 5 3 10 10 C 1.50700 * 109.47307 * 175.00275 * 9 6 5 11 11 H 1.07995 * 120.00386 * 0.02562 * 10 9 6 12 12 C 1.37882 * 119.99967 * 180.02562 * 10 9 6 13 13 N 1.31514 * 119.99846 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 120.00086 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.46930 * 90.00398 * 14 12 10 16 16 H 1.48497 * 109.47136 * 210.00089 * 14 12 10 17 17 H 1.48497 * 109.47400 * 330.00379 * 14 12 10 18 18 C 1.53510 * 109.70633 * 85.36943 * 5 3 2 19 19 C 1.53259 * 108.15561 * 177.87038 * 18 5 3 20 20 C 1.50440 * 109.43812 * 46.82835 * 19 18 5 21 21 C 1.30686 * 122.49780 * 342.53531 * 20 19 18 22 22 O 1.35129 * 123.34453 * 0.38794 * 21 20 19 23 23 H 1.09000 * 109.46740 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46844 * 299.99492 * 1 2 3 25 25 H 1.08999 * 109.46868 * 59.99960 * 1 2 3 26 26 H 1.09006 * 109.47392 * 66.11690 * 8 6 5 27 27 H 1.08997 * 109.47105 * 306.11541 * 8 6 5 28 28 H 1.08999 * 109.47234 * 186.12051 * 8 6 5 29 29 H 1.09008 * 109.47229 * 294.99987 * 9 6 5 30 30 H 1.09000 * 109.47410 * 55.00112 * 9 6 5 31 31 H 0.97006 * 119.99910 * 179.97438 * 13 12 10 32 32 H 1.08998 * 109.72411 * 297.53686 * 18 5 3 33 33 H 1.08997 * 109.72319 * 58.20438 * 18 5 3 34 34 H 1.09000 * 109.47273 * 166.81592 * 19 18 5 35 35 H 1.08998 * 109.47739 * 286.83158 * 19 18 5 36 36 H 1.08003 * 118.74938 * 162.51365 * 20 19 18 37 37 H 1.08001 * 118.32671 * 180.38744 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0140 2.5951 0.6298 7 1 5.1007 2.6079 0.7131 8 6 3.5561 3.7610 -0.2487 9 6 3.3942 2.7314 2.0220 10 6 3.9310 3.9702 2.6917 11 1 4.6426 4.5977 2.1758 12 6 3.5135 4.3024 3.9631 13 7 3.9815 5.3837 4.5473 14 14 2.2820 3.2175 4.8551 15 1 3.0076 2.1810 5.6327 16 1 1.4673 4.0484 5.7776 17 1 1.3922 2.5604 3.8643 18 6 4.0888 1.1858 -1.4413 19 6 5.6148 1.3231 -1.4052 20 6 6.1726 0.4296 -0.3312 21 6 5.4331 -0.0614 0.6279 22 8 4.1080 0.1782 0.7409 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 2.4673 3.8137 -0.2440 27 1 3.9080 3.6073 -1.2688 28 1 3.9667 4.6925 0.1407 29 1 2.3106 2.8080 1.9314 30 1 3.6479 1.8562 2.6200 31 1 3.6875 5.6177 5.4416 32 1 3.8162 0.2226 -1.8725 33 1 3.6609 1.9912 -2.0382 34 1 6.0287 1.0327 -2.3709 35 1 5.8816 2.3582 -1.1919 36 1 7.2242 0.1843 -0.3538 37 1 5.9050 -0.6907 1.3680 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829178536.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:23 Heat of formation + Delta-G solvation = -106.464240 kcal Electronic energy + Delta-G solvation = -20391.387656 eV Core-core repulsion = 17327.886297 eV Total energy + Delta-G solvation = -3063.501359 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.135 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.19883 -39.40474 -36.64100 -34.75033 -33.70031 -32.32010 -30.60912 -27.92683 -27.30909 -25.87287 -24.13321 -22.73872 -21.26491 -20.11971 -18.59034 -17.01038 -16.84076 -16.75459 -16.26994 -15.77814 -15.12692 -14.43935 -14.42996 -13.82262 -13.53559 -13.14701 -12.93403 -12.83913 -12.68804 -12.40721 -12.00821 -11.75510 -11.50228 -11.27017 -11.00322 -10.90314 -10.67026 -10.63376 -10.49582 -9.99173 -9.86063 -9.50766 -9.36702 -8.99889 -8.46472 -8.17143 -5.98458 -3.94525 2.23585 2.54702 2.83739 3.35519 3.42094 3.49208 3.64949 4.51821 4.64520 4.76461 5.00874 5.18452 5.19933 5.27604 5.29112 5.36316 5.42958 5.59750 5.64469 5.73851 5.88625 6.00194 6.11724 6.13941 6.33372 6.40602 6.46318 6.69439 6.83259 6.90946 7.20849 7.30187 7.49387 7.73258 7.83523 8.02451 8.58842 9.05750 9.64954 11.14840 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.018586 B = 0.009369 C = 0.007685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.181720 B = 2987.758066 C = 3642.693817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.351 6.351 3 C 0.484 3.516 4 O -0.473 6.473 5 C 0.132 3.868 6 C -0.080 4.080 7 H 0.085 0.915 8 C -0.150 4.150 9 C -0.014 4.014 10 C -0.508 4.508 11 H 0.074 0.926 12 C 0.067 3.933 13 N -0.905 5.905 14 Si 0.875 3.125 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.267 1.267 18 C -0.146 4.146 19 C -0.076 4.076 20 C -0.286 4.286 21 C 0.066 3.934 22 O -0.301 6.301 23 H 0.098 0.902 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.080 0.920 27 H 0.035 0.965 28 H 0.068 0.932 29 H 0.027 0.973 30 H 0.013 0.987 31 H 0.262 0.738 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.121 0.879 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.099 -12.196 -12.321 17.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.267 6.267 3 C 0.325 3.675 4 O -0.359 6.359 5 C 0.093 3.907 6 C -0.099 4.099 7 H 0.103 0.897 8 C -0.206 4.206 9 C -0.051 4.051 10 C -0.546 4.546 11 H 0.092 0.908 12 C -0.133 4.133 13 N -0.544 5.544 14 Si 0.702 3.298 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.192 1.192 18 C -0.184 4.184 19 C -0.112 4.112 20 C -0.306 4.306 21 C 0.003 3.997 22 O -0.215 6.215 23 H 0.117 0.883 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.099 0.901 27 H 0.054 0.946 28 H 0.087 0.913 29 H 0.045 0.955 30 H 0.032 0.968 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.139 0.861 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.508 -11.889 -12.042 16.989 hybrid contribution -0.592 -0.357 0.603 0.917 sum -2.100 -12.246 -11.439 16.888 Atomic orbital electron populations 1.23264 0.76980 1.03391 1.02565 1.86590 1.22839 1.33460 1.83822 1.23096 0.90418 0.81572 0.72365 1.90652 1.65571 1.35670 1.43965 1.21980 0.85800 0.89562 0.93376 1.21494 1.01198 0.89253 0.97931 0.89701 1.22080 1.03897 0.98387 0.96272 1.19738 0.96850 0.97617 0.90908 1.21027 1.26038 1.07489 1.00031 0.90842 1.24963 0.96049 0.94957 0.97353 1.69910 1.44579 1.25170 1.14782 0.86848 0.82245 0.80857 0.79831 1.20303 1.21412 1.19155 1.22278 0.97833 1.03643 0.94615 1.20311 0.92935 1.00068 0.97933 1.22409 1.00813 1.07861 0.99491 1.21968 0.82498 0.98419 0.96827 1.85996 1.21780 1.47480 1.66222 0.88325 0.91773 0.92052 0.90145 0.94626 0.91315 0.95525 0.96833 0.92864 0.90451 0.89244 0.90596 0.90180 0.86123 0.82463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 101.05 1.07 1.47 16 2 O -0.35 -5.81 10.31 -44.46 -0.46 -6.27 16 3 C 0.48 9.05 6.05 36.01 0.22 9.27 16 4 O -0.47 -9.72 11.94 -18.75 -0.22 -9.94 16 5 C 0.13 2.36 0.54 -91.51 -0.05 2.31 16 6 C -0.08 -1.65 1.18 -90.62 -0.11 -1.76 16 7 H 0.08 1.76 6.17 -51.93 -0.32 1.43 16 8 C -0.15 -2.92 8.18 37.16 0.30 -2.62 16 9 C -0.01 -0.35 3.01 -27.88 -0.08 -0.44 16 10 C -0.51 -14.78 9.04 -34.44 -0.31 -15.09 16 11 H 0.07 2.26 7.31 -52.49 -0.38 1.87 16 12 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 13 N -0.90 -28.47 13.96 55.43 0.77 -27.69 16 14 Si 0.87 22.87 27.47 -169.99 -4.67 18.20 16 15 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 16 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 17 H -0.27 -6.91 6.54 56.52 0.37 -6.54 16 18 C -0.15 -2.06 4.55 -26.33 -0.12 -2.18 16 19 C -0.08 -0.97 5.56 -27.88 -0.15 -1.12 16 20 C -0.29 -3.80 9.45 -36.07 -0.34 -4.14 16 21 C 0.07 0.97 10.41 29.10 0.30 1.27 16 22 O -0.30 -5.39 9.08 -31.10 -0.28 -5.68 16 23 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 25 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 26 H 0.08 1.68 5.50 -51.93 -0.29 1.40 16 27 H 0.03 0.57 5.83 -51.93 -0.30 0.26 16 28 H 0.07 1.45 7.14 -51.93 -0.37 1.08 16 29 H 0.03 0.71 5.32 -51.92 -0.28 0.43 16 30 H 0.01 0.35 7.16 -51.93 -0.37 -0.02 16 31 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.09 1.19 6.40 -51.93 -0.33 0.85 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 1.08 6.90 -51.93 -0.36 0.72 16 36 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 37 H 0.16 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 290.34 15.07 4.38 4.38 Total: -1.00 -33.39 290.34 -4.98 -38.37 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -5.13 Total: -0.26 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: 0.63 Total: -11.11 kcal Atomic # 7 Polarization: -28.47 SS G_CDS: 0.77 Total: -27.69 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.96 Total: -21.89 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -4.67 Total: 18.20 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -33.39 -4.98 -38.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829178536.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.092 kcal (2) G-P(sol) polarization free energy of solvation -33.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds