Wall clock time and date at job start Mon Mar 30 2020 06:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34229 * 117.00013 * 2 1 4 4 O 1.20826 * 120.00142 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00158 * 180.02562 * 3 2 1 6 6 C 1.52991 * 109.70921 * 205.95211 * 5 3 2 7 7 H 1.08995 * 109.47783 * 174.72085 * 6 5 3 8 8 C 1.53001 * 109.47309 * 294.72366 * 6 5 3 9 9 C 1.52999 * 109.46954 * 54.72163 * 6 5 3 10 10 C 1.50700 * 109.47307 * 175.00275 * 9 6 5 11 11 H 1.07995 * 120.00386 * 0.02562 * 10 9 6 12 12 C 1.37882 * 119.99967 * 180.02562 * 10 9 6 13 13 N 1.31514 * 119.99846 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 120.00086 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.46930 * 90.00398 * 14 12 10 16 16 H 1.48497 * 109.47136 * 210.00089 * 14 12 10 17 17 H 1.48497 * 109.47400 * 330.00379 * 14 12 10 18 18 C 1.53510 * 109.70633 * 85.36943 * 5 3 2 19 19 C 1.53259 * 108.15561 * 177.87038 * 18 5 3 20 20 C 1.50440 * 109.43812 * 46.82835 * 19 18 5 21 21 C 1.30686 * 122.49780 * 342.53531 * 20 19 18 22 22 O 1.35129 * 123.34453 * 0.38794 * 21 20 19 23 23 H 1.09000 * 109.46740 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46844 * 299.99492 * 1 2 3 25 25 H 1.08999 * 109.46868 * 59.99960 * 1 2 3 26 26 H 1.09006 * 109.47392 * 66.11690 * 8 6 5 27 27 H 1.08997 * 109.47105 * 306.11541 * 8 6 5 28 28 H 1.08999 * 109.47234 * 186.12051 * 8 6 5 29 29 H 1.09008 * 109.47229 * 294.99987 * 9 6 5 30 30 H 1.09000 * 109.47410 * 55.00112 * 9 6 5 31 31 H 0.97006 * 119.99910 * 179.97438 * 13 12 10 32 32 H 1.08998 * 109.72411 * 297.53686 * 18 5 3 33 33 H 1.08997 * 109.72319 * 58.20438 * 18 5 3 34 34 H 1.09000 * 109.47273 * 166.81592 * 19 18 5 35 35 H 1.08998 * 109.47739 * 286.83158 * 19 18 5 36 36 H 1.08003 * 118.74938 * 162.51365 * 20 19 18 37 37 H 1.08001 * 118.32671 * 180.38744 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0140 2.5951 0.6298 7 1 5.1007 2.6079 0.7131 8 6 3.5561 3.7610 -0.2487 9 6 3.3942 2.7314 2.0220 10 6 3.9310 3.9702 2.6917 11 1 4.6426 4.5977 2.1758 12 6 3.5135 4.3024 3.9631 13 7 3.9815 5.3837 4.5473 14 14 2.2820 3.2175 4.8551 15 1 3.0076 2.1810 5.6327 16 1 1.4673 4.0484 5.7776 17 1 1.3922 2.5604 3.8643 18 6 4.0888 1.1858 -1.4413 19 6 5.6148 1.3231 -1.4052 20 6 6.1726 0.4296 -0.3312 21 6 5.4331 -0.0614 0.6279 22 8 4.1080 0.1782 0.7409 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 2.4673 3.8137 -0.2440 27 1 3.9080 3.6073 -1.2688 28 1 3.9667 4.6925 0.1407 29 1 2.3106 2.8080 1.9314 30 1 3.6479 1.8562 2.6200 31 1 3.6875 5.6177 5.4416 32 1 3.8162 0.2226 -1.8725 33 1 3.6609 1.9912 -2.0382 34 1 6.0287 1.0327 -2.3709 35 1 5.8816 2.3582 -1.1919 36 1 7.2242 0.1843 -0.3538 37 1 5.9050 -0.6907 1.3680 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829178536.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:22 Heat of formation + Delta-G solvation = -127.601022 kcal Electronic energy + Delta-G solvation = -20392.304215 eV Core-core repulsion = 17327.886297 eV Total energy + Delta-G solvation = -3064.417918 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 254.135 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.53025 -40.67689 -38.01297 -36.35643 -35.06942 -34.20531 -32.12737 -29.31843 -28.89403 -27.14410 -25.57691 -24.24842 -22.78485 -21.67515 -19.98601 -18.92472 -18.19806 -18.06702 -17.63736 -17.04110 -16.49537 -16.28665 -15.64132 -15.40253 -14.92904 -14.76449 -14.38622 -14.15889 -14.08145 -13.92494 -13.50469 -13.12029 -13.02907 -12.83847 -12.75148 -12.50344 -12.05225 -11.99464 -11.81005 -11.73253 -11.66336 -11.43033 -11.03108 -10.80880 -10.77189 -9.29326 -8.31489 -6.31989 0.87731 1.26538 1.28487 1.40646 1.45281 1.60518 2.31277 2.43775 3.03553 3.40698 3.52086 3.79478 4.03647 4.15860 4.27080 4.28051 4.29357 4.38349 4.50270 4.61176 4.64761 4.69302 4.78018 4.94974 5.03044 5.06609 5.13086 5.19918 5.29784 5.39715 5.40960 5.62734 5.67395 5.74752 6.26313 6.53667 6.66971 6.74040 7.30735 8.84856 Molecular weight = 254.14amu Principal moments of inertia in cm(-1) A = 0.018586 B = 0.009369 C = 0.007685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.181720 B = 2987.758066 C = 3642.693817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.354 6.354 3 C 0.480 3.520 4 O -0.502 6.502 5 C 0.130 3.870 6 C -0.075 4.075 7 H 0.082 0.918 8 C -0.142 4.142 9 C -0.005 4.005 10 C -0.512 4.512 11 H 0.043 0.957 12 C 0.010 3.990 13 N -0.946 5.946 14 Si 0.936 3.064 15 H -0.263 1.263 16 H -0.279 1.279 17 H -0.266 1.266 18 C -0.140 4.140 19 C -0.081 4.081 20 C -0.272 4.272 21 C 0.031 3.969 22 O -0.321 6.321 23 H 0.138 0.862 24 H 0.050 0.950 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.042 0.958 29 H 0.012 0.988 30 H 0.007 0.993 31 H 0.266 0.734 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.073 0.927 36 H 0.145 0.855 37 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.126 -14.303 -13.645 19.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.270 6.270 3 C 0.323 3.677 4 O -0.390 6.390 5 C 0.090 3.910 6 C -0.094 4.094 7 H 0.100 0.900 8 C -0.199 4.199 9 C -0.042 4.042 10 C -0.550 4.550 11 H 0.062 0.938 12 C -0.186 4.186 13 N -0.587 5.587 14 Si 0.761 3.239 15 H -0.188 1.188 16 H -0.204 1.204 17 H -0.190 1.190 18 C -0.177 4.177 19 C -0.117 4.117 20 C -0.292 4.292 21 C -0.031 4.031 22 O -0.236 6.236 23 H 0.156 0.844 24 H 0.069 0.931 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.061 0.939 29 H 0.031 0.969 30 H 0.025 0.975 31 H 0.075 0.925 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.127 0.873 35 H 0.091 0.909 36 H 0.163 0.837 37 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -1.524 -14.023 -13.374 19.438 hybrid contribution -0.539 0.305 0.968 1.149 sum -2.063 -13.717 -12.406 18.610 Atomic orbital electron populations 1.23627 0.74826 1.05980 1.02518 1.86570 1.24971 1.32249 1.83202 1.23313 0.90925 0.81756 0.71731 1.90637 1.66299 1.36583 1.45457 1.21799 0.85727 0.87940 0.95489 1.21315 1.00601 0.91799 0.95676 0.90026 1.21982 1.02833 0.96847 0.98236 1.19582 0.95950 0.95201 0.93512 1.21309 1.25168 1.08400 1.00114 0.93845 1.25808 0.98086 0.96342 0.98410 1.70034 1.46274 1.26952 1.15456 0.85868 0.79982 0.79378 0.78719 1.18822 1.20415 1.19041 1.22318 0.98615 1.04884 0.91924 1.20448 0.92093 0.99665 0.99515 1.22773 1.01843 1.06131 0.98410 1.22464 0.81753 1.00325 0.98544 1.85975 1.23501 1.47217 1.66879 0.84444 0.93066 0.90924 0.91524 0.90712 0.93920 0.96944 0.97480 0.92546 0.88854 0.88413 0.87268 0.90888 0.83685 0.80467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 10.56 113.37 1.20 1.74 16 2 O -0.35 -11.17 10.31 -46.44 -0.48 -11.65 16 3 C 0.48 17.51 6.05 71.24 0.43 17.94 16 4 O -0.50 -20.54 11.94 21.96 0.26 -20.28 16 5 C 0.13 4.47 0.54 -11.37 -0.01 4.47 16 6 C -0.08 -3.09 1.18 -10.80 -0.01 -3.11 16 7 H 0.08 3.37 6.17 -2.39 -0.01 3.35 16 8 C -0.14 -5.57 8.18 71.98 0.59 -4.98 16 9 C -0.01 -0.26 3.01 29.85 0.09 -0.17 16 10 C -0.51 -30.65 9.04 25.60 0.23 -30.42 16 11 H 0.04 2.79 7.31 -2.91 -0.02 2.77 16 12 C 0.01 0.63 5.47 84.66 0.46 1.10 16 13 N -0.95 -60.83 13.96 21.45 0.30 -60.53 16 14 Si 0.94 47.62 27.47 68.60 1.88 49.50 16 15 H -0.26 -12.73 7.11 99.48 0.71 -12.03 16 16 H -0.28 -13.66 7.11 99.48 0.71 -12.96 16 17 H -0.27 -13.37 6.54 99.48 0.65 -12.72 16 18 C -0.14 -3.55 4.55 30.85 0.14 -3.41 16 19 C -0.08 -1.80 5.56 29.85 0.17 -1.63 16 20 C -0.27 -6.42 9.45 25.89 0.24 -6.17 16 21 C 0.03 0.85 10.41 68.10 0.71 1.55 16 22 O -0.32 -11.08 9.08 -70.66 -0.64 -11.72 16 23 H 0.14 2.07 8.14 -2.39 -0.02 2.05 16 24 H 0.05 1.32 8.13 -2.39 -0.02 1.30 16 25 H 0.07 1.52 8.13 -2.39 -0.02 1.50 16 26 H 0.07 2.82 5.50 -2.38 -0.01 2.80 16 27 H 0.07 2.28 5.83 -2.39 -0.01 2.27 16 28 H 0.04 1.85 7.14 -2.39 -0.02 1.83 16 29 H 0.01 0.67 5.32 -2.38 -0.01 0.66 16 30 H 0.01 0.36 7.16 -2.39 -0.02 0.34 16 31 H 0.27 15.96 8.31 -92.70 -0.77 15.19 16 32 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.10 2.29 6.40 -2.39 -0.02 2.28 16 34 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.07 1.77 6.90 -2.39 -0.02 1.76 16 36 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 37 H 0.18 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -73.58 290.34 6.58 -67.00 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 1.01 Total: 10.78 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: 4.24 Total: -23.10 kcal Atomic # 7 Polarization: -60.83 SS G_CDS: 0.30 Total: -60.53 kcal Atomic # 8 Polarization: -42.79 SS G_CDS: -0.86 Total: -43.65 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 1.88 Total: 49.50 kcal Total: -73.58 6.58 -67.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829178536.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.601 kcal (2) G-P(sol) polarization free energy of solvation -73.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds